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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912337
Clone id YMU001_000017_H09
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000017_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCATCTACATCCACGCATTTGGTAGTCCTCAATTGCTTTTATACAGCTTGCAACATCATA
CATGGCGGTGGTCACAGAAATGCCCAATGGTGAAAAAGCACCCATTGCATCTCTTCACCG
GTTTTTGCTTTGAGCCTCGCATAGATGCTTGTCCATGATGGCAGGCTATTTTGACTGCAT
TATATTGGGTAGGCCAATTTTTGTGTCAGAAAGGTTAGCAAATGCTGGCATGCAGGCAAA
GTTTACCGTGATTATTGAGACCGCAGTATCCCCAACCACTAATTATTTGTTGTTGCTGCT
CAAATACATGCAGAGCCCACACTAGCGATTGAATTCATTAGCCGAGAAAGGTAATTTTTC
CTCCGTTGTTTACCGACAATGGTCTAATCTTGTTACGAGTGGAATGCATATTGCTCCATC
TTCTTGGTGGTGCTGCCGTTGTGTAGGTATCTAATTTCCCGTTTCCTGACGGTGGTAATA
CTGGCAAACATGTTCGTTTGACATCCTCTTCTGTTG
■■Homology search results ■■ -
sp_hit_id Q9M310
Definition sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590 OS=Arabidopsis thaliana
Align length 51
Score (bit) 76.6
E-value 6.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912337|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H09.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590 OS=Ar...    77   6e-14
sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190 OS=Ar...    33   1.0  
sp|Q6PEH8|MED25_DANRE Mediator of RNA polymerase II transcriptio...    30   6.7  
sp|Q9VLA2|GCM2_DROME Transcription factor glial cells missing 2 ...    30   8.7  

>sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590
           OS=Arabidopsis thaliana GN=At3g61590 PE=2 SV=1
          Length = 411

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 30/51 (58%), Positives = 38/51 (74%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRIDACP 155
           +YI ++GSP LL + +    WRWSQKCP+ KK PL LFTGFCFEPR++  P
Sbjct: 361 VYIQSYGSPALLTFDMNLKYWRWSQKCPVTKKFPLQLFTGFCFEPRLEIAP 411


>sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190
           OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
          Length = 403

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRIDA 149
           I +  +  P++L + +   TW W  KCP + +     F  F F P + A
Sbjct: 353 ICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGFRWFSFVPSLSA 401


>sp|Q6PEH8|MED25_DANRE Mediator of RNA polymerase II transcription
           subunit 25 OS=Danio rerio GN=med25 PE=2 SV=1
          Length = 701

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 484 PVLPPSGNGKLDTYTTAAPP 425
           PVLPP G   L T TT +PP
Sbjct: 306 PVLPPGGKPSLSTVTTVSPP 325


>sp|Q9VLA2|GCM2_DROME Transcription factor glial cells missing 2
           OS=Drosophila melanogaster GN=gcm2 PE=2 SV=3
          Length = 613

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
 Frame = -3

Query: 322 VWALHVFEQQQQIISGWGYCGLNNHG-----KLCLHASIC*PF*HKNWP--TQYNAVKIA 164
           +++LH  E+ ++ ISGW     NNH      K CL   +C    H   P  ++ N     
Sbjct: 103 IYSLHN-EEAKKHISGWAMRNTNNHNVNILKKSCLGVLVCSQ--HCTLPNGSKINLRPAI 159

Query: 163 CHHGQASMRGSKQKPVKRCNG-----------CFFTIGHFCDH 68
           C   +    G K  P K C G           C + + HF  H
Sbjct: 160 CDKARRKQEG-KACPNKSCRGGRLEIKPCRGHCGYPVTHFWRH 201
tr_hit_id Q1P9U1
Definition tr|Q1P9U1|Q1P9U1_9ROSI F-box protein (Fragment) OS=Betula platyphylla
Align length 51
Score (bit) 75.9
E-value 1.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912337|Adiantum capillus-veneris mRNA, clone:
YMU001_000017_H09.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1P9U1|Q1P9U1_9ROSI F-box protein (Fragment) OS=Betula platyp...    76   1e-12
tr|A7QNE5|A7QNE5_VITVI Chromosome chr2 scaffold_132, whole genom...    75   2e-12
tr|A7PZQ6|A7PZQ6_VITVI Chromosome chr15 scaffold_40, whole genom...    75   2e-12
tr|B6TVC0|B6TVC0_MAIZE Kelch motif family protein OS=Zea mays PE...    70   6e-11
tr|B6TJU9|B6TJU9_MAIZE Kelch motif family protein OS=Zea mays PE...    68   3e-10
tr|Q5SMS6|Q5SMS6_ORYSJ Fimbriata-like (Os01g0659900 protein) OS=...    67   5e-10
tr|B8A6W4|B8A6W4_ORYSI Putative uncharacterized protein OS=Oryza...    67   5e-10
tr|A5GXS1|A5GXS1_MAIZE F-box family protein (Fragment) OS=Zea ma...    67   5e-10
tr|A2ZW75|A2ZW75_ORYSJ Putative uncharacterized protein OS=Oryza...    67   5e-10
tr|Q6K235|Q6K235_ORYSJ F-box-like protein (Putative uncharacteri...    66   1e-09
tr|Q0E293|Q0E293_ORYSJ Os02g0260200 protein OS=Oryza sativa subs...    66   1e-09
tr|A2X362|A2X362_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea...    44   0.004
tr|A9RBY7|A9RBY7_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.006
tr|A9TXA2|A9TXA2_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.34 
tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.44 
tr|B4JCE9|B4JCE9_DROGR GH10675 OS=Drosophila grimshawi GN=GH1067...    34   4.9  
tr|B3EYF9|B3EYF9_9NOST Polyketide synthase-related protein OS=Cy...    33   6.4  
tr|B4NKI5|B4NKI5_DROWI GK14502 OS=Drosophila willistoni GN=GK145...    33   6.5  

>tr|Q1P9U1|Q1P9U1_9ROSI F-box protein (Fragment) OS=Betula
           platyphylla GN=FIM PE=2 SV=1
          Length = 55

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRIDACP 155
           IYI ++G+P LL+  +    W+WSQKCP+ K+ PL LFTGFCFEPR+++ P
Sbjct: 5   IYIQSYGAPALLILDMSQRQWKWSQKCPVTKRFPLQLFTGFCFEPRLESAP 55


>tr|A7QNE5|A7QNE5_VITVI Chromosome chr2 scaffold_132, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002498001
           PE=4 SV=1
          Length = 406

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 27/51 (52%), Positives = 39/51 (76%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRIDACP 155
           +YI ++G+P LL++ +    W+WSQKCP+ K+ PL LFTGFCFEPR++  P
Sbjct: 356 VYIQSYGAPALLVFDMNLRQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP 406


>tr|A7PZQ6|A7PZQ6_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026967001
           PE=4 SV=1
          Length = 413

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRIDACP 155
           IYI ++G+P LL + +    W+WSQKCP+VK+ PL LFTGFCFEPR++  P
Sbjct: 355 IYIQSYGAPHLLGFDINLKQWKWSQKCPVVKRFPLQLFTGFCFEPRLEIAP 405


>tr|B6TVC0|B6TVC0_MAIZE Kelch motif family protein OS=Zea mays PE=2
           SV=1
          Length = 418

 Score = 70.1 bits (170), Expect = 6e-11
 Identities = 28/48 (58%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRID 146
           IYI ++GSP LL + + H +WRWS K P+ K+ PL LFTGF FEPR+D
Sbjct: 368 IYIQSYGSPALLTFEMNHRSWRWSAKSPVSKRFPLQLFTGFSFEPRLD 415


>tr|B6TJU9|B6TJU9_MAIZE Kelch motif family protein OS=Zea mays PE=2
           SV=1
          Length = 408

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 27/48 (56%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRID 146
           IYI ++GSP LL + + H +W+WS K P+ K+ PL LFTGF FEPR+D
Sbjct: 358 IYIQSYGSPALLTFEVNHKSWKWSVKSPVSKRFPLQLFTGFSFEPRLD 405


>tr|Q5SMS6|Q5SMS6_ORYSJ Fimbriata-like (Os01g0659900 protein)
           OS=Oryza sativa subsp. japonica GN=P0445H04.9 PE=4 SV=1
          Length = 411

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRID 146
           +YI ++G+  LL +  +   W+WS KCP+ K+ PL LFTGFCFEPR+D
Sbjct: 361 VYIQSYGATALLAFDTKQKQWKWSAKCPVSKRFPLQLFTGFCFEPRLD 408


>tr|B8A6W4|B8A6W4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03136 PE=4 SV=1
          Length = 402

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRID 146
           +YI ++G+  LL +  +   W+WS KCP+ K+ PL LFTGFCFEPR+D
Sbjct: 352 VYIQSYGATALLAFDTKQKQWKWSAKCPVSKRFPLQLFTGFCFEPRLD 399


>tr|A5GXS1|A5GXS1_MAIZE F-box family protein (Fragment) OS=Zea mays
           PE=2 SV=1
          Length = 345

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPR 140
           IYI ++GSP LL + + H +WRWS K P+ K+ PL LFTGF FEPR
Sbjct: 300 IYIQSYGSPALLTFEMNHRSWRWSAKSPVSKRFPLQLFTGFSFEPR 345


>tr|A2ZW75|A2ZW75_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002797 PE=4 SV=1
          Length = 433

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRID 146
           +YI ++G+  LL +  +   W+WS KCP+ K+ PL LFTGFCFEPR+D
Sbjct: 383 VYIQSYGATALLAFDTKQKQWKWSAKCPVSKRFPLQLFTGFCFEPRLD 430


>tr|Q6K235|Q6K235_ORYSJ F-box-like protein (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica GN=B1178F07.25
           PE=4 SV=1
          Length = 405

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +3

Query: 3   IYIHAFGSPQLLLYSLQHHTWRWSQKCPMVKKHPLHLFTGFCFEPRID 146
           IYI ++GSP LL + L    W+WS K P+ K+ PL LFTGF FEPR+D
Sbjct: 355 IYIQSYGSPALLTFELNQKLWKWSLKSPVTKRFPLQLFTGFSFEPRLD 402