BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912342|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_A04.
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus ...    37   0.049
sp|Q6DVA0|LEMD2_MOUSE LEM domain-containing protein 2 OS=Mus mus...    37   0.084
sp|Q8NC56|LEMD2_HUMAN LEM domain-containing protein 2 OS=Homo sa...    37   0.084
sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo...    36   0.11 
sp|P0ABF1|PCNB_ECOLI Poly(A) polymerase OS=Escherichia coli (str...    30   6.0  
sp|P0ABF2|PCNB_ECOL6 Poly(A) polymerase OS=Escherichia coli O6 G...    30   6.0  
sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase OS=Escherichia coli O157...    30   6.0  

>sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus
            musculus GN=Lemd3 PE=1 SV=2
          Length = 921

 Score = 37.4 bits (85), Expect = 0.049
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
 Frame = +2

Query: 2    PYWCRAQEWILSHYSTXXXXXXXXXXXXXXXREA-YRNRKVSKRAEQLYVQVCEALEE-K 175
            P+WCR +   ++                   R   YR  K  +   Q+Y  V + ++  +
Sbjct: 629  PFWCRFRRAFITVTHRLLLLCLGVVLVCVALRYMRYRWTKEEEETRQMYDMVVKIIDVLR 688

Query: 176  SRNNASGNEK----WIVASHLRDHLLALRERQ-YNAVW-HAVEQMVCKDSRIDQYPKLVK 337
            S N A    K    ++   H+RD L+  ++R+    VW  AV+ +   +SR+    + V 
Sbjct: 689  SHNEACQETKDLQPYMPLPHVRDSLIQPQDRKKMKKVWDRAVDFLAANESRVRTETRRVG 748

Query: 338  GESKVVWEW 364
            G   +VW W
Sbjct: 749  GADFLVWRW 757


>sp|Q6DVA0|LEMD2_MOUSE LEM domain-containing protein 2 OS=Mus
           musculus GN=Lemd2 PE=1 SV=1
          Length = 511

 Score = 36.6 bits (83), Expect = 0.084
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
 Frame = +2

Query: 104 YRNRKVSKRAEQLYVQVCEALEEKSRNNASGNEK-----WIVASHLRDHLLALRERQ-YN 265
           YR RK+ +  + +Y  V + ++    +     +      ++   H+RD L+  + R+   
Sbjct: 407 YRWRKLEEEEQAMYEMVKKIIDVVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMK 466

Query: 266 AVW-HAVEQMVCKDSRIDQYPKLVKGESKVVWEW 364
            VW  AVE +   +SRI      V GE  +VW W
Sbjct: 467 RVWDRAVEFLASNESRIQTESHRVAGEDMLVWRW 500


>sp|Q8NC56|LEMD2_HUMAN LEM domain-containing protein 2 OS=Homo
           sapiens GN=LEMD2 PE=1 SV=1
          Length = 503

 Score = 36.6 bits (83), Expect = 0.084
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
 Frame = +2

Query: 104 YRNRKVSKRAEQLYVQVCEALEEKSRNNASGNEK-----WIVASHLRDHLLALRERQ-YN 265
           YR RK+ +  + +Y  V + ++    +     +      ++   H+RD L+  + R+   
Sbjct: 399 YRWRKLEEEEQAMYEMVKKIIDVVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMK 458

Query: 266 AVW-HAVEQMVCKDSRIDQYPKLVKGESKVVWEW 364
            VW  AVE +   +SRI      V GE  +VW W
Sbjct: 459 RVWDRAVEFLASNESRIQTESHRVAGEDMLVWRW 492


>sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo
           sapiens GN=LEMD3 PE=1 SV=2
          Length = 911

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
 Frame = +2

Query: 104 YRNRKVSKRAEQLYVQVCEALEE-KSRNNASGNEK----WIVASHLRDHLLALRERQ-YN 265
           YR  K  +   Q+Y  V + ++  +S N A    K    ++   H+RD L+   +R+   
Sbjct: 654 YRWTKEEEETRQMYDMVVKIIDVLRSHNEACQENKDLQPYMPIPHVRDSLIQPHDRKKMK 713

Query: 266 AVW-HAVEQMVCKDSRIDQYPKLVKGESKVVWEW 364
            VW  AV+ +   +SR+    + + G   +VW W
Sbjct: 714 KVWDRAVDFLAANESRVRTETRRIGGADFLVWRW 747


>sp|P0ABF1|PCNB_ECOLI Poly(A) polymerase OS=Escherichia coli (strain
           K12) GN=pcnB PE=1 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 161 ALEEKSRNNASGNEKWIVASHLRDHLLALRERQYNAVWHAVEQMVCK 301
           AL+   R N +G E W+V   +RD LL  + + ++   +A  + V K
Sbjct: 48  ALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRK 94


>sp|P0ABF2|PCNB_ECOL6 Poly(A) polymerase OS=Escherichia coli O6
           GN=pcnB PE=3 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 161 ALEEKSRNNASGNEKWIVASHLRDHLLALRERQYNAVWHAVEQMVCK 301
           AL+   R N +G E W+V   +RD LL  + + ++   +A  + V K
Sbjct: 48  ALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRK 94


>sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase OS=Escherichia coli O157:H7
           GN=pcnB PE=3 SV=2
          Length = 465

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 161 ALEEKSRNNASGNEKWIVASHLRDHLLALRERQYNAVWHAVEQMVCK 301
           AL+   R N +G E W+V   +RD LL  + + ++   +A  + V K
Sbjct: 48  ALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRK 94

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912342|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_A04.
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PCD9|A7PCD9_VITVI Chromosome chr2 scaffold_11, whole genome...   124   3e-27
tr|B6T848|B6T848_MAIZE Putative uncharacterized protein OS=Zea m...   117   4e-25
tr|A3AD52|A3AD52_ORYSJ Putative uncharacterized protein OS=Oryza...   111   2e-23
tr|A9RFH2|A9RFH2_PHYPA Predicted protein OS=Physcomitrella paten...   110   4e-23
tr|Q9LS27|Q9LS27_ARATH Genomic DNA, chromosome 5, BAC clone:F10E...   102   1e-20
tr|B8AKZ7|B8AKZ7_ORYSI Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|Q10T70|Q10T70_ORYSJ Expressed protein (Fragment) OS=Oryza sat...    63   1e-08
tr|B6S335|B6S335_9BILA Nuclear membrane protein XMAN1-like prote...    42   0.029
tr|B7PT17|B7PT17_IXOSC LEM domain-containing protein, putative O...    39   0.19 
tr|Q8AXN1|Q8AXN1_XENLA Smad1 antagonistic effector OS=Xenopus la...    38   0.32 
tr|Q7ZTB4|Q7ZTB4_XENLA Nuclear membrane protein XMAN1 OS=Xenopus...    38   0.32 
tr|B7ZRW8|B7ZRW8_XENLA XMAN1 protein OS=Xenopus laevis GN=XMAN1 ...    38   0.32 
tr|A9JS14|A9JS14_XENLA XMAN1 protein (Fragment) OS=Xenopus laevi...    38   0.32 
tr|B6IDA7|B6IDA7_9ZZZZ LEM domain containing 3 (Fragment) OS=syn...    37   0.92 
tr|Q4KM57|Q4KM57_RAT LEM domain containing 2 OS=Rattus norvegicu...    37   0.92 
tr|B4DVH5|B4DVH5_HUMAN cDNA FLJ55252, highly similar to Homo sap...    37   0.92 
tr|A8MS91|A8MS91_HUMAN Putative uncharacterized protein LEMD2 OS...    37   0.92 
tr|B4F6V4|B4F6V4_XENTR Putative uncharacterized protein OS=Xenop...    36   1.2  
tr|B4DI45|B4DI45_HUMAN cDNA FLJ56612, highly similar to Inner nu...    36   1.2  
tr|B6MQ73|B6MQ73_BRAFL Putative uncharacterized protein OS=Branc...    36   1.6  
tr|Q6C688|Q6C688_YARLI YALI0E11539p OS=Yarrowia lipolytica GN=YA...    36   1.6  
tr|B1FVJ8|B1FVJ8_9BURK FAD linked oxidase domain protein OS=Burk...    35   2.0  
tr|Q5TZH9|Q5TZH9_DANRE LEM domain containing 3 OS=Danio rerio GN...    35   2.7  
tr|B3DIX5|B3DIX5_DANRE Lemd3 protein OS=Danio rerio GN=lemd3 PE=...    35   2.7  
tr|B2EHJ4|B2EHJ4_9BACT RNA polymerase, sigma-24 subunit, ECF sub...    34   6.0  
tr|Q4PI55|Q4PI55_USTMA Putative uncharacterized protein OS=Ustil...    33   7.8  

>tr|A7PCD9|A7PCD9_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015822001
           PE=4 SV=1
          Length = 383

 Score =  124 bits (311), Expect = 3e-27
 Identities = 62/136 (45%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
 Frame = +2

Query: 2   PYWCRAQEWILSHYSTXXXXXXXXXXXXXXXREAYRNRKVSKRAEQLYVQVCEALEEKSR 181
           P+ CR Q+WI +H                  R   + R +S RAE+LY Q+C+ LEE + 
Sbjct: 216 PFSCRVQQWISNHALVLMPICGLLVGSILLLRRIRQRRNLSARAEELYNQICDILEENAM 275

Query: 182 NNASGN---EKWIVASHLRDHLLALRERQYNAVWHAVEQMVCKDSRIDQYPKLVKGESKV 352
               G+   E W+V S LRDHLL  +ER+   +W  VE++V +DSR+D+YPKLVKGESKV
Sbjct: 276 MTKGGDGEGEPWVVVSWLRDHLLLPKERKDPLLWRKVEELVQEDSRLDRYPKLVKGESKV 335

Query: 353 VWEWQVEGALRPPISK 400
           VWEWQVEG+L   + K
Sbjct: 336 VWEWQVEGSLSSRLRK 351


>tr|B6T848|B6T848_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 383

 Score =  117 bits (293), Expect = 4e-25
 Identities = 59/137 (43%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
 Frame = +2

Query: 2   PYWCRAQEWILSHYSTXXXXXXXXXXXXXXXREAYRNRKVSKRAEQLYVQVCEALEEKSR 181
           P  CR ++WI  + ++                  Y+ R +S RAEQ+Y QVCE LE+ + 
Sbjct: 197 PMGCRVRQWIFRNTTSVAIFCILFAALLWILWIIYKRRTLSNRAEQIYEQVCEILEDNAV 256

Query: 182 N---NASGNEKWIVASHLRDHLLALRERQYNAVWHAVEQMVCKDSRIDQYPKLVKGESKV 352
           N   + S +E W+V S LRDHLL  +ER+   +W  VE+++ +DSRIDQYPK++KGESKV
Sbjct: 257 NAEIDNSNSEVWVVTSWLRDHLLVPQERKNAFLWKKVEELIREDSRIDQYPKVIKGESKV 316

Query: 353 VWEWQVEGALRPPISKL 403
           V+EWQ  G+L   I K+
Sbjct: 317 VYEWQASGSLSAKIKKV 333


>tr|A3AD52|A3AD52_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008724 PE=4 SV=1
          Length = 313

 Score =  111 bits (278), Expect = 2e-23
 Identities = 53/96 (55%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
 Frame = +2

Query: 104 YRNRKVSKRAEQLYVQVCEALEEKSRNNASGN---EKWIVASHLRDHLLALRERQYNAVW 274
           Y+ + +SKRAEQ+Y QVCE LE+ + +   GN   E W+V S LRDHLL  +ER+   +W
Sbjct: 182 YKRQALSKRAEQIYAQVCEVLEDNAIDAKIGNSECEPWVVTSWLRDHLLVPQERRNAFLW 241

Query: 275 HAVEQMVCKDSRIDQYPKLVKGESKVVWEWQVEGAL 382
             VE+++ +DSRIDQYPK+VKGESKVV+EWQ  G+L
Sbjct: 242 KKVEELILEDSRIDQYPKVVKGESKVVYEWQASGSL 277


>tr|A9RFH2|A9RFH2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65420 PE=4 SV=1
          Length = 350

 Score =  110 bits (276), Expect = 4e-23
 Identities = 52/87 (59%), Positives = 68/87 (78%)
 Frame = +2

Query: 107 RNRKVSKRAEQLYVQVCEALEEKSRNNASGNEKWIVASHLRDHLLALRERQYNAVWHAVE 286
           ++R++  RAE+LY+QVCE LEE+S   +SG  KW+VAS LRDHLL   ER+   +W  VE
Sbjct: 247 QSRRLVTRAEELYMQVCEVLEERS-TGSSGETKWVVASRLRDHLLLPSERKVATLWKEVE 305

Query: 287 QMVCKDSRIDQYPKLVKGESKVVWEWQ 367
           ++V +DSRIDQYPKLV G+S+VVWEWQ
Sbjct: 306 RLVQEDSRIDQYPKLVNGDSRVVWEWQ 332


>tr|Q9LS27|Q9LS27_ARATH Genomic DNA, chromosome 5, BAC clone:F10E10
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 375

 Score =  102 bits (254), Expect = 1e-20
 Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 4/107 (3%)
 Frame = +2

Query: 95  REAYRNRKVSKRAEQLYVQVCEALEEKS--RNNA--SGNEKWIVASHLRDHLLALRERQY 262
           R   R +  S+R E+LY QVC+ LEE +   N+A  S  E W++AS LRD+LL  RER+ 
Sbjct: 241 RRIQRKQCFSRRVEELYDQVCDFLEENAVASNSAETSNCEPWVIASWLRDYLLLPRERRD 300

Query: 263 NAVWHAVEQMVCKDSRIDQYPKLVKGESKVVWEWQVEGALRPPISKL 403
             +W  VE+++ +DSRID+Y KL+KGE KVVWEWQVEG+L   +SKL
Sbjct: 301 PLLWTKVEELIKEDSRIDRYEKLLKGEKKVVWEWQVEGSL--SLSKL 345


>tr|B8AKZ7|B8AKZ7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09603 PE=4 SV=1
          Length = 339

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
 Frame = +2

Query: 146 VQVCEALEEKSRNNASGN---EKWIVASHLRDHLLALRERQYNAVWHAVEQMVCKDSRID 316
           V VCE LE+ + +   GN   E W+V S LRDHLL  +ER+   +W  VE+++ +DSRID
Sbjct: 222 VLVCEVLEDNAIDAKIGNSECEPWVVTSWLRDHLLVPQERRNAFLWKKVEELILEDSRID 281

Query: 317 QYPKLVKGESKVVWEWQVEGAL 382
           QYPK+VKGESKVV+EWQ  G+L
Sbjct: 282 QYPKVVKGESKVVYEWQASGSL 303


>tr|Q10T70|Q10T70_ORYSJ Expressed protein (Fragment) OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g01016 PE=4 SV=1
          Length = 296

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
 Frame = +2

Query: 2   PYWCRAQEWILSHYSTXXXXXXXXXXXXXXXREAYRNRKVSKRAEQLYVQVCEALEEKSR 181
           P  C+ ++WI  +  +                  Y+ + +SKRAEQ+Y QVCE LE+ + 
Sbjct: 201 PLTCQIRQWISRNIMSVTAFGVLFSALLWILWTIYKRQALSKRAEQIYAQVCEVLEDNAI 260

Query: 182 NNASGN---EKWIVASHLRDHLLALRERQYNAVW 274
           +   GN   E W+V S LRDHLL  +ER+   +W
Sbjct: 261 DAKIGNSECEPWVVTSWLRDHLLVPQERRNAFLW 294


>tr|B6S335|B6S335_9BILA Nuclear membrane protein XMAN1-like protein
           OS=Philodina roseola PE=4 SV=1
          Length = 658

 Score = 41.6 bits (96), Expect = 0.029
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +2

Query: 95  REAYRNRKVSKRAEQLYVQVCEALE---EKSRNNASGNEKWIVASHLRDHLLALRER-QY 262
           R A +NR+     +     + + LE   E+   + +  + W+  SH+RD L+ + +R + 
Sbjct: 422 RRATQNREKENAYKTFVDDILQMLENQYEEHLRDPTNTQPWLAISHIRDMLIPVADRKKL 481

Query: 263 NAVWHAVEQMVCK-DSRIDQYPKLVKGESKVVWEW 364
             +W   ++ + + +SR+    +++ GE   VW W
Sbjct: 482 KELWQRAQKQISESESRVRAETQVIHGEEFDVWRW 516


>tr|B7PT17|B7PT17_IXOSC LEM domain-containing protein, putative
           OS=Ixodes scapularis GN=IscW_ISCW006995 PE=4 SV=1
          Length = 660

 Score = 38.9 bits (89), Expect = 0.19
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
 Frame = +2

Query: 125 KRAEQLY--VQVCEALEEKSRNNASGNEKWIVASHLRDHLLALRER-QYNAVW-HAVEQM 292
           +R  +LY  V+   A+ ++   +    E ++   H+RD L+   +R Q + +W +AV+ +
Sbjct: 406 ERRRRLYSLVEKITAILKEHAESPDCREPYLAQVHVRDMLIEPSQRKQLSQLWQNAVDFL 465

Query: 293 VCKDSRIDQYPKLVKGESKVVWEWQVEGALRPP 391
              +SR+    + + GES +VW W + GA  PP
Sbjct: 466 GRNESRVRTERQHIDGESYLVWRW-LGGAASPP 497


>tr|Q8AXN1|Q8AXN1_XENLA Smad1 antagonistic effector OS=Xenopus
           laevis GN=SANE PE=2 SV=2
          Length = 784

 Score = 38.1 bits (87), Expect = 0.32
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
 Frame = +2

Query: 104 YRNRKVSKRAEQLYVQVCEALEE-KSRNNA----SGNEKWIVASHLRDHLLALRERQ-YN 265
           YR  K  +  +Q+Y  V + ++  KS N A     G E +    H+RD L+  ++R+   
Sbjct: 527 YRWAKEEEETKQMYDMVVKIIDVLKSHNEACQENKGLEPYTPIPHVRDSLILPQDRKKMK 586

Query: 266 AVW-HAVEQMVCKDSRIDQYPKLVKGESKVVWEW 364
            VW  AVE +   +SR+    + + G    VW+W
Sbjct: 587 KVWDRAVEFLDANESRVRTETQKIGGADFQVWKW 620