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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912349
Clone id YMU001_000018_A11
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCAGATGAATGAGGGCACAGGTCTTCAGTATGGGCATACTTATGTTGCACAGGTACACC
AGCCTCACGCGTCTATACCAGAGGTTTCTGGAGTAGGGACACCTTCACCAGTGTATCAGG
CTCAGGATGGTGGACATTCCTTGCGCTTTCATGATGGAGGTTCAGCGCCAGTTTTCAAGC
ATAGCACACACAAATAAGATCTGTAACGGTTAACGGTAGTTTTAATTTATTCTTAATAGT
CACCCTGTTGAAGGAGCATATTATGACTCCTGGCAATGCATTATTGCAACTCAACGTAAG
TAGGAGAGTTGGTGTACATTGTTGGTCGTGGTGTAAATAGGCTATTGCCCCTTATTGATA
AGGAGAAGAGTTGGAATGATTCGTTGGATTGTATTGTGAAGGGTGATTCTCTTGCTCTTG
AGAGCTCACTTTCTGCTGTAGATCTGAGGAAAGCTTCAGAGTTCTAGTTATTTGTTCCCT
TGAAAACCGGTTATGCCTGGTTTCAGTGGGTTTGTATCAAACAGTACTAGATTTACAGG
■■Homology search results ■■ -
sp_hit_id P52172
Definition sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogaster
Align length 57
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912349|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_A11.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogas...    32   1.5  
sp|Q99N23|CAH15_MOUSE Carbonic anhydrase 15 OS=Mus musculus GN=C...    31   4.4  
sp|Q15Q19|DDL_PSEA6 D-alanine--D-alanine ligase OS=Pseudoalterom...    30   7.5  
sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostel...    30   9.8  
sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melan...    30   9.8  

>sp|P52172|SRP_DROME Box A-binding factor OS=Drosophila melanogaster
           GN=srp PE=1 SV=2
          Length = 1264

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 438 QQKVSSQEQENHPSQYNPTNHSNSSPYQ*GAIAYLHHDQQCTPTLLLTLSCNNALPG 268
           QQ++  Q+Q++H +Q+   N S+SSP      A LHH      T     +   A+ G
Sbjct: 546 QQQLQQQQQQHHHNQHQHHNSSSSSP----GPAGLHHSSSSAATAAAVAAATAAVNG 598


>sp|Q99N23|CAH15_MOUSE Carbonic anhydrase 15 OS=Mus musculus GN=Ca15
           PE=2 SV=1
          Length = 324

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 33  GHTYVAQVHQPHASIPEVSGVGTPSPVYQAQDGGHSLRFHDGGSAPVFKHSTHK*D 200
           GHT + +V+    + P + G G PSP Y+       L FH G  +P  + S H  D
Sbjct: 89  GHTVLLRVNSCQQNCPAIRGAGLPSPEYRLL----QLHFHWG--SPGHQGSEHSLD 138


>sp|Q15Q19|DDL_PSEA6 D-alanine--D-alanine ligase
           OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
           GN=ddl PE=3 SV=1
          Length = 318

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 17  HRSSVWAYLCCTGTPASRVYTRGFWSRDTFTSVSGSGW 130
           ++S+   Y C +G PA +       + D F +V+GSGW
Sbjct: 228 YQSNTTEYFCPSGLPAEQEGLLARLALDAFDAVAGSGW 265


>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium
           discoideum GN=sf3b4 PE=3 SV=1
          Length = 359

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 438 QQKVSSQEQENHPSQYNPTNHSNSSPYQ*GAIAYLHH 328
           QQ+   Q+Q++HP   +P  H +  P+Q     + HH
Sbjct: 293 QQQQQQQQQQHHPHHQHPIPHPHPLPHQLRPHPHPHH 329


>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila
           melanogaster GN=pum PE=1 SV=2
          Length = 1533

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = -3

Query: 438 QQKVSSQEQENHPSQYNPT--NHS-----NSSPYQ*GAIAYLHH 328
           QQ+   Q+Q+ HP QYN    NH+      SS  Q G   Y HH
Sbjct: 264 QQQQQQQQQQQHPGQYNANLLNHAAALGHMSSYAQSGGSMYDHH 307
tr_hit_id Q22WK7
Definition tr|Q22WK7|Q22WK7_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 89
Score (bit) 35.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912349|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_A11.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q22WK7|Q22WK7_TETTH Putative uncharacterized protein OS=Tetra...    35   2.5  
tr|A9VVU5|A9VVU5_BACWK DNA segregation ATPase OS=Bacillus weihen...    34   4.3  
tr|B8BW34|B8BW34_THAPS Predicted protein OS=Thalassiosira pseudo...    34   4.3  
tr|A8PWK0|A8PWK0_MALGO Putative uncharacterized protein OS=Malas...    34   4.3  
tr|Q22WK6|Q22WK6_TETTH Putative uncharacterized protein OS=Tetra...    34   5.6  
tr|Q22687|Q22687_CAEEL Putative uncharacterized protein OS=Caeno...    33   7.3  

>tr|Q22WK7|Q22WK7_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00155270 PE=4
            SV=1
          Length = 4663

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
 Frame = -3

Query: 456  KLSSDLQQKVSSQEQENHPSQYNPTNHSNSS----PYQ*GAIAYLHHDQQCTPTLLLTLS 289
            K+S  + QK  +  Q N+P+ YN    + SS    PY  G  + L  D +   TL++T  
Sbjct: 3366 KMSVFVYQKDQANLQMNYPNMYNKHQSTLSSILNTPY--GWRSLLLKDDK---TLIVT-- 3418

Query: 288  CNNALPGVIICSFNRVTIKNKLKLPLTVT 202
            CNN   GV+I  FN+ +I+  L++  T++
Sbjct: 3419 CNNY--GVVIAQFNQTSIQQPLQVLSTIS 3445


>tr|A9VVU5|A9VVU5_BACWK DNA segregation ATPase OS=Bacillus
           weihenstephanensis (strain KBAB4) GN=BcerKBAB4_5859 PE=4
           SV=1
          Length = 388

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
 Frame = -3

Query: 438 QQKVSSQEQENHPSQYNPTNHSNSSPYQ*GAI---AYLHHDQQCTPTLLLTLSCNNALPG 268
           ++K+  + + +H  +YN  N  N  PY   AI   A L  +++C  T+    +   AL  
Sbjct: 222 RRKLMEEYEVDHIDEYNKLNPDNQKPYILLAIDEVAMLQDEKECMKTIEKISAVGRALGV 281

Query: 267 VIICSFNRVTIK---NKLKLPLTV 205
            ++ S  R   K    KLKL +TV
Sbjct: 282 FLMLSMQRPDAKVLDGKLKLNMTV 305


>tr|B8BW34|B8BW34_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_21576 PE=4 SV=1
          Length = 833

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 483 SREQITRTLKLSSDLQQKVSSQEQENHPSQYNPTNHSNSSPYQ*GAIAYLHHDQQ 319
           SR+Q+ +  ++++      + Q+  NH  + +P  ++NSSPY   +    HH QQ
Sbjct: 152 SRQQMNQQ-QMTTSYSPNENGQQHRNHQQRMSPYANTNSSPYAKASQTQTHHHQQ 205


>tr|A8PWK0|A8PWK0_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_1127 PE=4 SV=1
          Length = 664

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = -3

Query: 498 RHNRFSREQITRTLKLSSDLQQKVSSQEQENHPSQYNPTNHSNSSPY-Q*GAIAYLHHDQ 322
           R  R S EQ+ +   + +  QQ+ ++ +Q N      P   +++S   Q  A  Y+    
Sbjct: 58  RQGRVSEEQLQQIRTILAQQQQRQNAVQQMNAARPVQPIYGTDASTMAQPAAANYMQQQA 117

Query: 321 QCTPTLLLTLSCNNALP---GVIICSFNRV 241
           Q  P  + T++  +ALP     ++ +FNRV
Sbjct: 118 QPKPPTMSTMNAQSALPRHEATLMENFNRV 147


>tr|Q22WK6|Q22WK6_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00155280 PE=4
            SV=1
          Length = 2862

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
 Frame = -3

Query: 456  KLSSDLQQKVSSQEQENHPSQYNPTNHSNSS----PYQ*GAIAYLHHDQQCTPTLLLTLS 289
            K+S  + QK  +  Q N+P+ YN    + SS    PY  G  + L  D +      L ++
Sbjct: 1636 KMSVFVYQKEQANLQMNYPNMYNKHQSTLSSILNTPY--GWRSLLLKDDK-----TLIVA 1688

Query: 288  CNNALPGVIICSFNRVTIKNKLKLPLTVT 202
            CNN   GV+I  FN+ +I+  L +  T++
Sbjct: 1689 CNN--QGVVIAQFNQTSIQQPLYVLSTIS 1715


>tr|Q22687|Q22687_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=T22H6.1 PE=4 SV=2
          Length = 221

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
 Frame = -3

Query: 441 LQQKVSSQEQENHPSQ-----YNPTNH----------SNSSPYQ*GAIAY---------- 337
           ++++V  +E++  PS+     YN  NH           NSS Y   A +Y          
Sbjct: 32  IRREVDGEEEDIMPSEECYHKYNEENHFKVFSNYLNRKNSSHYSPIAPSYQQALLRLQVK 91

Query: 336 -LHHDQQ-------CTPTLLLTLSCNNALPGVIICSFNRVTIKNKLKLPLTVTDLICVC 184
            L H +Q       C    L T+S    L    +C F  V   N  +LP  +T++ C C
Sbjct: 92  GLKHGEQITKSSGKCNSKKLDTISAETPLRDRALCKFEYVLNYNPKRLPAALTEVKCSC 150