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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912354
Clone id YMU001_000018_B04
Library
Length 386
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCACAGATAGACAAGTACCGCATGAAGTTTAAGGCATTCGACTTCGCATAAAAGCGCAAT
TCAAGCTTTGCTAGTATATGTACTGTTAAAAAGACTGTTGGTACCTGCACTGTCTAAGGA
ATTGGCAAGATACATAAAATAGATTGGTTTTATAAGGCTTCCATTTGTCCATATACCAGA
TATAAATCATCATCAGGAGACTTGTTGTCCACTCTCAAAATGTTGAACCATTCCATCCAA
AGTCTGAACCCTTCACATCATAGAACTTCAAGTAGAATCGAGATTTGGGCACTGATAGCT
TGGACTCTAGAATGGCTGCAATGGCCGCACTAATCGACTTGTTAACAGATGGCCCCAGGC
CCCCTATGGAGGCAAGCTCACCATAT
■■Homology search results ■■ -
sp_hit_id Q76BK2
Definition sp|Q76BK2|MIF_XENLA Macrophage migration inhibitory factor OS=Xenopus laevis
Align length 53
Score (bit) 40.8
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912354|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_B04.
         (386 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q76BK2|MIF_XENLA Macrophage migration inhibitory factor OS=Xe...    41   0.002
sp|P91850|MIFH_BRUMA Macrophage migration inhibitory factor homo...    40   0.004
sp|A9JSE7|MIF_XENTR Macrophage migration inhibitory factor OS=Xe...    40   0.005
sp|O44786|MIFH_WUCBA Macrophage migration inhibitory factor homo...    39   0.006
sp|P80928|MIF_PIG Macrophage migration inhibitory factor OS=Sus ...    38   0.018
sp|O55052|MIF_MERUN Macrophage migration inhibitory factor OS=Me...    38   0.018
sp|P30904|MIF_RAT Macrophage migration inhibitory factor OS=Ratt...    37   0.024
sp|P34884|MIF_MOUSE Macrophage migration inhibitory factor OS=Mu...    37   0.024
sp|Q02960|MIF_CHICK Macrophage migration inhibitory factor OS=Ga...    37   0.040
sp|Q1ZZU7|MIF_SHEEP Macrophage migration inhibitory factor OS=Ov...    35   0.090
sp|P80177|MIF_BOVIN Macrophage migration inhibitory factor OS=Bo...    35   0.090
sp|Q6DN04|MIF_MACMU Macrophage migration inhibitory factor OS=Ma...    35   0.12 
sp|Q4R549|MIF_MACFA Macrophage migration inhibitory factor OS=Ma...    35   0.12 
sp|P14174|MIF_HUMAN Macrophage migration inhibitory factor OS=Ho...    35   0.12 
sp|Q9Y663|HS3SA_HUMAN Heparan sulfate glucosamine 3-O-sulfotrans...    30   2.9  

>sp|Q76BK2|MIF_XENLA Macrophage migration inhibitory factor
           OS=Xenopus laevis GN=mif PE=1 SV=1
          Length = 115

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G   N               ++P +R Y+ +YD+  ++ GWNGSTF
Sbjct: 62  LCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114


>sp|P91850|MIFH_BRUMA Macrophage migration inhibitory factor homolog
           OS=Brugia malayi GN=BMBAC01P19.1 PE=3 SV=3
          Length = 115

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGST 221
           L SIG +GP VN                +PK+R Y++F D++ S   +NGST
Sbjct: 62  LKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIEFVDIEASSMAFNGST 113


>sp|A9JSE7|MIF_XENTR Macrophage migration inhibitory factor
           OS=Xenopus tropicalis GN=mif PE=3 SV=1
          Length = 115

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L+SIG +G   N               ++P +R Y+ F+D+  ++ GWNGSTF
Sbjct: 62  LSSIGKIGGPQNKSYSKLLCDYLTKQMNIPANRVYINFHDLNPANVGWNGSTF 114


>sp|O44786|MIFH_WUCBA Macrophage migration inhibitory factor homolog
           OS=Wuchereria bancrofti GN=MIF PE=3 SV=3
          Length = 115

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +GP VN                +PK+R Y++  D++ S   +NGSTF
Sbjct: 62  LKSIGCVGPKVNNSHAEKLYKLLADELKIPKNRCYIESVDIEASSMAFNGSTF 114


>sp|P80928|MIF_PIG Macrophage migration inhibitory factor OS=Sus
           scrofa GN=MIF PE=1 SV=3
          Length = 115

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G + N                +   R Y+ +YD+  ++ GWNGSTF
Sbjct: 62  LHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114


>sp|O55052|MIF_MERUN Macrophage migration inhibitory factor
           OS=Meriones unguiculatus GN=MIF PE=3 SV=3
          Length = 115

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G + N                +   R Y+ +YD+  ++ GWNGSTF
Sbjct: 62  LHSIGKIGGAQNRTYSKLLCGLLADRLRISPDRIYINYYDMNAANVGWNGSTF 114


>sp|P30904|MIF_RAT Macrophage migration inhibitory factor OS=Rattus
           norvegicus GN=Mif PE=1 SV=4
          Length = 115

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G + N                +   R Y+ +YD+  ++ GWNGSTF
Sbjct: 62  LHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114


>sp|P34884|MIF_MOUSE Macrophage migration inhibitory factor OS=Mus
           musculus GN=Mif PE=1 SV=2
          Length = 115

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G + N                +   R Y+ +YD+  ++ GWNGSTF
Sbjct: 62  LHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 114


>sp|Q02960|MIF_CHICK Macrophage migration inhibitory factor
           OS=Gallus gallus GN=MIF PE=3 SV=3
          Length = 115

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G   N                V   R Y+ ++D+  ++ GWNGSTF
Sbjct: 62  LYSIGKIGGQQNKTYTKLLCDMIAKHLHVSADRVYINYFDINAANVGWNGSTF 114


>sp|Q1ZZU7|MIF_SHEEP Macrophage migration inhibitory factor OS=Ovis
           aries GN=MIF PE=3 SV=1
          Length = 115

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 376 LASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           L SIG +G + N                +   R Y+ F D+  ++ GWNGSTF
Sbjct: 62  LHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
tr_hit_id B3TLP2
Definition tr|B3TLP2|B3TLP2_ELAGV Light-inducible protein ATLS1 OS=Elaeis guineensis var. tenera
Align length 56
Score (bit) 72.0
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912354|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_B04.
         (386 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3TLP2|B3TLP2_ELAGV Light-inducible protein ATLS1 OS=Elaeis g...    72   1e-11
tr|B4FX16|B4FX16_MAIZE Macrophage migration inhibitory factor OS...    72   2e-11
tr|B7FN58|B7FN58_MEDTR Putative uncharacterized protein OS=Medic...    70   7e-11
tr|A9NTC0|A9NTC0_PICSI Putative uncharacterized protein OS=Picea...    70   7e-11
tr|B8BIM7|B8BIM7_ORYSI Putative uncharacterized protein OS=Oryza...    69   2e-10
tr|B7F8E6|B7F8E6_ORYSJ cDNA, clone: J065029G04, full insert sequ...    69   2e-10
tr|A9P9R4|A9P9R4_POPTR Putative uncharacterized protein OS=Popul...    66   8e-10
tr|A9SRE7|A9SRE7_PHYPA Predicted protein OS=Physcomitrella paten...    65   1e-09
tr|A9PAU6|A9PAU6_POPTR Putative uncharacterized protein OS=Popul...    65   1e-09
tr|A9PCJ4|A9PCJ4_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|Q9M011|Q9M011_ARATH Light-inducible protein ATLS1 OS=Arabidop...    64   4e-09
tr|Q42335|Q42335_ARATH MIF homologue (Fragment) OS=Arabidopsis t...    64   4e-09
tr|B8LPF1|B8LPF1_PICSI Putative uncharacterized protein OS=Picea...    63   6e-09
tr|A9NRK6|A9NRK6_PICSI Putative uncharacterized protein OS=Picea...    63   6e-09
tr|Q9SMV2|Q9SMV2_ARATH AT-LS1 product OS=Arabidopsis thaliana GN...    62   1e-08
tr|B6TUZ6|B6TUZ6_MAIZE Macrophage migration inhibitory factor OS...    61   3e-08
tr|A7QUD8|A7QUD8_VITVI Chromosome chr11 scaffold_177, whole geno...    61   3e-08
tr|Q5Z858|Q5Z858_ORYSJ Os06g0699500 protein OS=Oryza sativa subs...    59   2e-07
tr|A2YGN4|A2YGN4_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|A7QFF7|A7QFF7_VITVI Chromosome chr8 scaffold_88, whole genome...    57   4e-07
tr|Q9LU69|Q9LU69_ARATH Light-inducible protein ATLS1-like (At5g5...    56   8e-07
tr|Q9Y063|Q9Y063_TRISP Macrophage migration inhibitory factor li...    50   7e-05
tr|Q95UI8|Q95UI8_TRISP Macrophage migration inhibitory factor-li...    50   7e-05
tr|B6TSN0|B6TSN0_MAIZE Macrophage migration inhibitory factor OS...    49   1e-04
tr|Q95UI7|Q95UI7_TRIPS Macrophage migration inhibitory factor-li...    48   2e-04
tr|A3CE70|A3CE70_ORYSJ Putative uncharacterized protein OS=Oryza...    48   3e-04
tr|Q9U920|Q9U920_TRITR Macrophage migration inhibitory factor-li...    48   3e-04
tr|Q2RBL5|Q2RBL5_ORYSJ Macrophage migration inhibitory factor fa...    47   4e-04
tr|Q2QYS8|Q2QYS8_ORYSJ Macrophage migration inhibitory factor fa...    47   4e-04
tr|Q0IQQ1|Q0IQQ1_ORYSJ Os12g0107500 protein OS=Oryza sativa subs...    47   4e-04

>tr|B3TLP2|B3TLP2_ELAGV Light-inducible protein ATLS1 OS=Elaeis
           guineensis var. tenera PE=4 SV=1
          Length = 115

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 35/56 (62%), Positives = 37/56 (66%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGL P VN               SVPKSRF+LKFYD KGS+FGWNGSTF
Sbjct: 60  YGELVSIGGLNPDVNKKLSAAIASILETKLSVPKSRFFLKFYDTKGSNFGWNGSTF 115


>tr|B4FX16|B4FX16_MAIZE Macrophage migration inhibitory factor
           OS=Zea mays PE=4 SV=1
          Length = 115

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 36/56 (64%), Positives = 36/56 (64%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGL P VN               SVPKSRFYLKFYD K SDFGWNGSTF
Sbjct: 60  YGELVSIGGLNPDVNKKLSAGIASILESKLSVPKSRFYLKFYDSKRSDFGWNGSTF 115


>tr|B7FN58|B7FN58_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 115

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/56 (58%), Positives = 37/56 (66%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGL P VN               SVPK+RF+LKFYD KGS+FGWNG+TF
Sbjct: 60  YGELVSIGGLNPDVNKKLSAAIAAILETKLSVPKTRFFLKFYDTKGSNFGWNGTTF 115


>tr|A9NTC0|A9NTC0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 115

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/56 (58%), Positives = 35/56 (62%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGLG   N                VPKSRFY+KFYDVK SDFGWNG+TF
Sbjct: 60  YGELVSIGGLGSDTNKKLSAAIATILDTKLKVPKSRFYIKFYDVKRSDFGWNGTTF 115


>tr|B8BIM7|B8BIM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34803 PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 33/56 (58%), Positives = 35/56 (62%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGL P VN               S+PK RFYLKFYD K SDFGWNG+TF
Sbjct: 60  YGELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSKRSDFGWNGTTF 115


>tr|B7F8E6|B7F8E6_ORYSJ cDNA, clone: J065029G04, full insert
           sequence OS=Oryza sativa subsp. japonica PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 33/56 (58%), Positives = 35/56 (62%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGL P VN               S+PK RFYLKFYD K SDFGWNG+TF
Sbjct: 60  YGELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSKRSDFGWNGTTF 115


>tr|A9P9R4|A9P9R4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 115

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 32/56 (57%), Positives = 36/56 (64%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           +GEL SIGGLGP VN               SVPKSR +LKFYD +G+ FGWNGSTF
Sbjct: 60  FGELVSIGGLGPDVNKNLSFAIASILEKKLSVPKSRLFLKFYDSQGTHFGWNGSTF 115


>tr|A9SRE7|A9SRE7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166244 PE=4 SV=1
          Length = 115

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGG+GP  N               SVP +RFY+KF+DVK SD GWNGSTF
Sbjct: 60  YGELISIGGVGPDTNKRLSAAISDILKTKLSVPSNRFYIKFFDVKRSDMGWNGSTF 115


>tr|A9PAU6|A9PAU6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 76

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 32/56 (57%), Positives = 35/56 (62%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL SIGGL P VN               SVPKSR +LKFYD +G+ FGWNGSTF
Sbjct: 21  YGELVSIGGLSPDVNKTLSSVVASILEKKLSVPKSRLFLKFYDSQGTHFGWNGSTF 76


>tr|A9PCJ4|A9PCJ4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 115

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 32/56 (57%), Positives = 35/56 (62%)
 Frame = -2

Query: 385 YGELASIGGLGPSVNXXXXXXXXXXXXXXXSVPKSRFYLKFYDVKGSDFGWNGSTF 218
           YGEL S+GGL   VN               SVPKSRF+LKF+D KGS FGWNGSTF
Sbjct: 60  YGELVSVGGLSGDVNKKLSSAIATILESKLSVPKSRFFLKFFDSKGSHFGWNGSTF 115