BP912359 |
Clone id |
YMU001_000018_B09 |
Library |
YMU01 |
Length |
510 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000018_B09. |
Accession |
BP912359 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTTTTTTTTTTTTTTTTCTTCAAGAATTGTGACTAAGTGGTCATAAGAAGGTGGAAGTGC ACTCAATAGTATGGCCACTTTGTCATCTTCTGGTACTTCAACCTGGATGTAAGTGAGCTG TGTGACAATGCTCTTAAGCCTATTCACTAGGCTAGCAATGTCCTCCCCTTCAATCATAGT AATTTTGTAAAGCTGTCTTTCAAGACTAACTTTGCTTCTTTTGGCCCTGGCTCCAAAATT ACTTTCTAGGACATGCCAGGCATCATGTGCATGCTTACATTCATCTATGAAATGCACGTA GTTATCATGCAAGGAGGTGATGATGATTCCCAATGCTTGTTCGTCTTTAGCCAGATTCTG TGCACTTGTTATGAGTGTAGATGCCCTAGTGTGCACTCCATCGGGTTCGGCTTGTTGCTC TAAGGAATTGCCGATGCAGACCACAAACATTTTTTCATAAGGTAACCTCCTAACTTTGTT TGCTAGGTGTGAAACCACTTCCCGTTGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
108 |
Score (bit) |
71.6 |
E-value |
2.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2QVJ2 |
Definition |
tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica |
Align length |
106 |
Score (bit) |
70.9 |
E-value |
3.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912359|Adiantum capillus-veneris mRNA, clone: YMU001_000018_B09. (490 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-co... 71 3e-11 tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4... 69 1e-10 tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprote... 68 3e-10 tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-co... 66 8e-10 tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa ... 65 1e-09 tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE... 65 1e-09 tr|A7QTZ9|A7QTZ9_VITVI Chromosome undetermined scaffold_174, who... 64 4e-09 tr|B4MVS9|B4MVS9_DROWI GK15001 OS=Drosophila willistoni GN=GK150... 63 6e-09 tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O... 63 8e-09 tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-co... 62 1e-08 tr|B4N7F3|B4N7F3_DROWI GK19402 OS=Drosophila willistoni GN=GK194... 62 1e-08 tr|Q7XUF5|Q7XUF5_ORYSJ OJ991113_30.13 protein OS=Oryza sativa su... 62 2e-08 tr|B4LA17|B4LA17_DROMO GI21899 OS=Drosophila mojavensis GN=GI218... 62 2e-08 tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 61 2e-08 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 61 2e-08 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 61 2e-08 tr|Q9ZPU5|Q9ZPU5_ARATH Putative retroelement pol polyprotein OS=... 60 7e-08 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 60 7e-08 tr|Q02900|Q02900_ARATH Orf 1 (Fragment) OS=Arabidopsis thaliana ... 58 2e-07 tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE... 57 4e-07 tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop... 57 5e-07 tr|A5B864|A5B864_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07 tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07 tr|A5AER2|A5AER2_VITVI Putative uncharacterized protein OS=Vitis... 56 8e-07 tr|Q9LVY5|Q9LVY5_ARATH Copia-like retroelement pol polyprotein O... 56 1e-06 tr|Q9LJD0|Q9LJD0_ARATH Gag-pol polyprotein-like OS=Arabidopsis t... 56 1e-06 tr|Q2AA73|Q2AA73_ASPOF Polyprotein-like, related OS=Asparagus of... 55 1e-06 tr|A5C2Z8|A5C2Z8_VITVI Putative uncharacterized protein OS=Vitis... 55 1e-06 tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis... 55 1e-06 tr|A7PY35|A7PY35_VITVI Chromosome chr15 scaffold_37, whole genom... 55 2e-06
>tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g12620 PE=4 SV=1 Length = 424
Score = 70.9 bits (172), Expect = 3e-11 Identities = 38/106 (35%), Positives = 65/106 (61%) Frame = -1
Query: 319 QALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEGED 140 QA I SL D+ ++ + + K + + W L S + +++ SK+ L++QLY + M E D Sbjct: 59 QAAATIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQEESD 118
Query: 139 IASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLVTIL 2 + V+ +V L+ + V++ ++DK ILL +LPPSY+H+VTIL Sbjct: 119 LRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTIL 164
>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4 SV=1 Length = 1328
Score = 68.9 bits (167), Expect = 1e-10 Identities = 39/108 (36%), Positives = 65/108 (60%) Frame = -1
Query: 325 DEQALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEG 146 DE+A I L D+ V+ I + + A W LE+ + ++ +K+ L++QLY + M EG Sbjct: 57 DEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEG 116
Query: 145 EDIASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLVTIL 2 + S +N L ++TQL + V++ E+DK +LL++LP SYD L T + Sbjct: 117 TNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTI 164
>tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprotein (Retrotransposon protein, putative, Ty1-copia subclass) OS=Oryza sativa subsp. japonica GN=OSJNBa0050H14.7 PE=4 SV=1 Length = 556
Score = 67.8 bits (164), Expect = 3e-10 Identities = 37/106 (34%), Positives = 63/106 (59%) Frame = -1
Query: 319 QALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEGED 140 QA II SL D ++ + + K + W L S + +++ SK+ L++QLY + M E D Sbjct: 190 QATAIIRLSLSDFVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESD 249
Query: 139 IASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLVTIL 2 + V+ +V L+ + V++ ++DK ILL +LPPS++H+VT L Sbjct: 250 LRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTL 295
>tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g36020 PE=4 SV=1 Length = 425
Score = 66.2 bits (160), Expect = 8e-10 Identities = 36/106 (33%), Positives = 62/106 (58%) Frame = -1
Query: 319 QALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEGED 140 QA I SL D+ ++ + + K + W L S + +++ SK+ L++QLY + M E D Sbjct: 59 QAAATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESD 118
Query: 139 IASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLVTIL 2 + V+ +V L+ + V++ ++D ILL +LPPSY+H+VT L Sbjct: 119 LRKHVDVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTL 164
>tr|Q7XLX2|Q7XLX2_ORYSA OSJNBa0042I15.19 protein OS=Oryza sativa GN=OSJNBa0042I15.19 PE=4 SV=3 Length = 478
Score = 65.5 bits (158), Expect = 1e-09 Identities = 35/103 (33%), Positives = 57/103 (55%) Frame = -1
Query: 319 QALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEGED 140 QA I L D ++ + E W LE+ F ++ +K L+++LY + M EG D Sbjct: 140 QAAATIRRCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGAD 199
Query: 139 IASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLV 11 + + VN +VT L + VEV ++DK +LL +LP SY+H++ Sbjct: 200 LTAHVNVFNQLVTDLVKMDVEVDDEDKAIVLLCSLPESYEHVM 242
>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4 SV=1 Length = 1298
Score = 65.5 bits (158), Expect = 1e-09 Identities = 31/105 (29%), Positives = 60/105 (57%) Frame = -1
Query: 325 DEQALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEG 146 +E A+ + S+ D + I+E K A++ W L + A++ +K+ L+R+LY + M E Sbjct: 52 NEDAMADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSES 111
Query: 145 EDIASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLV 11 + +N L ++ +QLT + ++ ++ +LL +LP SYD L+ Sbjct: 112 TSVTEHLNTLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLI 156
>tr|A7QTZ9|A7QTZ9_VITVI Chromosome undetermined scaffold_174, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006611001 PE=4 SV=1 Length = 167
Score = 63.9 bits (154), Expect = 4e-09 Identities = 33/99 (33%), Positives = 63/99 (63%), Gaps = 2/99 (2%) Frame = -1
Query: 292 LHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEGEDIASLVNRLK 113 L D+ ++ + + + W LES + ++ R+K+ L+++LY + M+EG +++ +N L Sbjct: 68 LDDDVMYHVMDEESPTTNWLKLESRYMSKLLRNKLYLKQKLYGLKMVEGSNLSQYINVLN 127
Query: 112 SIVTQLTYIQVEVPEDDKVAILLSALPPS--YDHLVTIL 2 I++ L I V+ ++DK +LL++LP S Y++LVTIL Sbjct: 128 HIISDLKQIDVKFEDEDKALMLLNSLPASSTYENLVTIL 166
>tr|B4MVS9|B4MVS9_DROWI GK15001 OS=Drosophila willistoni GN=GK15001 PE=4 SV=1 Length = 1249
Score = 63.2 bits (152), Expect = 6e-09 Identities = 34/108 (31%), Positives = 57/108 (52%) Frame = -1
Query: 325 DEQALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEG 146 D +AL I S+ + + +I C A +AW L + KVSL +L + M +G Sbjct: 51 DRKALASITLSVKPSQLAYIKNCLTAFEAWTRLRDVHQPKGPVRKVSLYNKLLSLRMTDG 110
Query: 145 EDIASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLVTIL 2 +D+ S +N ++ QL V++ E+ + ILLS+LPP Y++ V + Sbjct: 111 QDMPSYINGFSDVLDQLAGAGVQINEELRTIILLSSLPPVYENFVVAI 158
>tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g19840 PE=2 SV=1 Length = 1137
Score = 62.8 bits (151), Expect = 8e-09 Identities = 29/105 (27%), Positives = 63/105 (60%) Frame = -1
Query: 328 KDEQALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIE 149 +DE+A+ +I ++ D + I+ K A +AW L+ + ++ ++V L+ ++Y M + Sbjct: 40 QDEKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQD 99
Query: 148 GEDIASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHL 14 + + V+ + +++ L +Q++VP++ + ++LSALP SYD L Sbjct: 100 SKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDML 144
>tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g29210 PE=4 SV=2 Length = 415
Score = 62.4 bits (150), Expect = 1e-08 Identities = 35/106 (33%), Positives = 61/106 (57%) Frame = -1
Query: 319 QALGIIITSLHDNYVHFIDECKHAHDAWHVLESNFGARAKRSKVSLERQLYKITMIEGED 140 QA I SL D+ ++ + + K + W L S +++ SK+ L++QLY + + E D Sbjct: 59 QAAATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESD 118
Query: 139 IASLVNRLKSIVTQLTYIQVEVPEDDKVAILLSALPPSYDHLVTIL 2 + V+ +V L+ + V++ ++DK ILL +LP SY+H+VT L Sbjct: 119 LRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTL 164
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