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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912364
Clone id YMU001_000018_C02
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGGGACGAAAATTAGGGTCCCGATGCTCTAGAGAGCTGATTATACTCCCAGTTTGTATC
GATCTCCCAGTGAAATGCAGACTAGGAGAGCAACCAAGCTTGCAGAGGCGTCTAGAATTC
CAATCTTTGGGTAGAGTCACTTGTCATGAGGCCCATTTCTCAAGCTTCTGCAAAGCGAAG
AGCAGAAGTGCTACACAGAGAGCGTGCACAAGAAGGAAATGTTACCAACAACGTCTATGC
CAGGTATTTCAATGAAAGTGCTACACAGAGAGCGTGCACAAGAAGGAAATGTTACCAACA
ACGTCTATGCCTGATATTCAGAGCAATTACCTCATACTCTTCAATGAAGATAAAATATGG
TTTCCAAAAAACATGGAGGCTTTCTAACATGGACTCGGCGCTCTGCACACAATCTTCATA
CACAGAGGAGCAATGACATGCCAGCTAGTAAGTAGTCTTCAAATTGTCAGTAACTTAATA
TCCATGTCACAAGCGGAATGGCCCAAATATCTTAGCATCAATAATCAAACATCAGCGGCC
GCGAATTCTCCAG
■■Homology search results ■■ -
sp_hit_id Q38953
Definition sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana
Align length 29
Score (bit) 30.8
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912364|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C02.
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-depen...    31   0.005
sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen...    27   0.34 
sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyost...    26   0.93 
sp|Q5RE88|WDR66_PONAB WD repeat-containing protein 66 OS=Pongo a...    32   1.9  
sp|Q8TBY9|WDR66_HUMAN WD repeat-containing protein 66 OS=Homo sa...    32   2.5  
sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS...    30   9.5  
sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor, mitochon...    30   9.5  

>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase OS=Arabidopsis thaliana
           GN=At3g26560 PE=2 SV=2
          Length = 1168

 Score = 30.8 bits (68), Expect(2) = 0.005
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 98  ACRGV*NSNLWVESLVMRPISQASAKRRA 184
           A + V N    +ESLV+ PISQASAK+RA
Sbjct: 810 AKQNVYNPKQGLESLVITPISQASAKQRA 838



 Score = 28.5 bits (62), Expect(2) = 0.005
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163 SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
           S   AK R+         KCY          + YTES ++ EM P TS+P+IQ
Sbjct: 830 SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEM-PPTSIPEIQ 871


>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase mog-5 OS=Caenorhabditis
           elegans GN=mog-5 PE=2 SV=1
          Length = 1200

 Score = 26.6 bits (57), Expect(2) = 0.34
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           N    ++SLV+ PISQA+AK+R+
Sbjct: 841 NPKSGMDSLVVTPISQAAAKQRS 863



 Score = 26.2 bits (56), Expect(2) = 0.34
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 175 AKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQSNYL 333
           AK RS         KCY          + YTE   + EMLP T +P+IQ   L
Sbjct: 859 AKQRSGRAGRTGPGKCY----------RLYTERAFRDEMLP-TPVPEIQRTNL 900


>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8
           OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1
          Length = 1160

 Score = 26.2 bits (56), Expect(2) = 0.93
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 175 AKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQSNYL 333
           A+ RS         KCY          + YTES  K EML  +S+P+IQ   L
Sbjct: 827 ARQRSGRAGRTGPGKCY----------RLYTESAFKNEML-ASSIPEIQRTNL 868



 Score = 25.0 bits (53), Expect(2) = 0.93
 Identities = 10/18 (55%), Positives = 17/18 (94%)
 Frame = +2

Query: 131 VESLVMRPISQASAKRRA 184
           ++SLV+ PISQA+A++R+
Sbjct: 814 MDSLVVAPISQAAARQRS 831


>sp|Q5RE88|WDR66_PONAB WD repeat-containing protein 66 OS=Pongo
           abelii GN=WDR66 PE=2 SV=1
          Length = 1155

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 262 YTESVHKKEMLPTTSMPDIQSNYLILFNEDKI 357
           Y   + + ++LP  SM ++Q  YL+  N DK+
Sbjct: 845 YGSPIEQTQVLPVRSMAELQKRYLVFINRDKV 876


>sp|Q8TBY9|WDR66_HUMAN WD repeat-containing protein 66 OS=Homo
           sapiens GN=WDR66 PE=1 SV=1
          Length = 1154

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 262 YTESVHKKEMLPTTSMPDIQSNYLILFNEDKI 357
           Y   + + ++LP  SM ++Q  YL+  N DK+
Sbjct: 844 YGSPIEQTQVLPVRSMAELQKRYLVFINRDKL 875


>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1
           OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2
          Length = 719

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRAEVLHRERA 208
           NS L +ESL ++PISQ++A +R+    RE A
Sbjct: 397 NSKLGLESLTVQPISQSAAMQRSGRAGREAA 427


>sp|Q8CHZ9|MTERF_MOUSE Transcription termination factor,
           mitochondrial OS=Mus musculus GN=Mterf PE=2 SV=1
          Length = 379

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 274 RSLCSTFIEIPGIDVVGNISFLCTLSV*HFCSSLCRSLRNGP 149
           RS  S F     +++  NI FLC++ + H C  LCR L N P
Sbjct: 144 RSPESFFRSNNNLNLENNIKFLCSVGLTHKC--LCRLLTNAP 183
tr_hit_id Q6K4U8
Definition tr|Q6K4U8|Q6K4U8_ORYSJ Putative RNA helicase OS=Oryza sativa subsp. japonica
Align length 23
Score (bit) 30.8
E-value 0.053
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912364|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C02.
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K4U8|Q6K4U8_ORYSJ Putative RNA helicase OS=Oryza sativa sub...    31   0.053
tr|A2X3S5|A2X3S5_ORYSI Putative uncharacterized protein OS=Oryza...    31   0.053
tr|A3A5W2|A3A5W2_ORYSJ Putative uncharacterized protein OS=Oryza...    31   0.053
tr|Q0WLB6|Q0WLB6_ARATH Putative ATP-dependent RNA helicase OS=Ar...    31   0.054
tr|Q0WUZ2|Q0WUZ2_ARATH Putative ATP-dependent RNA helicase (Frag...    31   0.055
tr|Q0E1V1|Q0E1V1_ORYSJ Os02g0301500 protein (Fragment) OS=Oryza ...    31   0.055
tr|Q01B22|Q01B22_OSTTA DHX8_ARATH Putative pre-mRNA splicing fac...    30   0.089
tr|A4RVY8|A4RVY8_OSTLU Predicted protein OS=Ostreococcus lucimar...    30   0.11 
tr|Q5B409|Q5B409_EMENI Putative uncharacterized protein OS=Emeri...    30   0.15 
tr|Q4WV51|Q4WV51_ASPFU RNA helicase-like splicing factor (HRH1),...    30   0.15 
tr|B0Y0T1|B0Y0T1_ASPFC RNA helicase-like splicing factor (HRH1),...    30   0.15 
tr|A1DEA3|A1DEA3_NEOFI RNA helicase-like splicing factor (HRH1),...    30   0.15 
tr|A1CB15|A1CB15_ASPCL RNA helicase-like splicing factor (HRH1),...    30   0.15 
tr|A5AQH3|A5AQH3_VITVI Putative uncharacterized protein OS=Vitis...    30   0.15 
tr|A7AWE8|A7AWE8_BABBO RNA helicase, putative OS=Babesia bovis G...    30   0.15 
tr|A7Q9V8|A7Q9V8_VITVI Chromosome chr8 scaffold_68, whole genome...    30   0.15 
tr|B8BR58|B8BR58_THAPS ATP dependent RNA helicase OS=Thalassiosi...    31   0.19 
tr|Q7YY04|Q7YY04_CRYPV Pre-mRNA splicing factor ATP-dependent RN...    29   0.19 
tr|A3FPT2|A3FPT2_CRYPV Pre-mRNA splicing factor ATP-dependent RN...    29   0.19 
tr|Q5CMU1|Q5CMU1_CRYHO Pre-mRNA splicing factor ATP-dependent RN...    29   0.20 
tr|B7FYK9|B7FYK9_PHATR Predicted protein OS=Phaeodactylum tricor...    30   0.26 
tr|Q5Z9X4|Q5Z9X4_ORYSJ Os06g0343100 protein OS=Oryza sativa subs...    28   0.32 
tr|A3BBG7|A3BBG7_ORYSJ Putative uncharacterized protein OS=Oryza...    28   0.32 
tr|B8B1N7|B8B1N7_ORYSI Putative uncharacterized protein OS=Oryza...    28   0.32 
tr|B4LNR3|B4LNR3_DROVI GJ21042 OS=Drosophila virilis GN=GJ21042 ...    30   0.41 
tr|B4KT85|B4KT85_DROMO GI21186 OS=Drosophila mojavensis GN=GI211...    30   0.41 
tr|B3MD00|B3MD00_DROAN GF12026 OS=Drosophila ananassae GN=GF1202...    30   0.41 
tr|Q2TWR2|Q2TWR2_ASPOR DEAH-box RNA helicase OS=Aspergillus oryz...    28   0.41 
tr|B8NW13|B8NW13_ASPFL RNA helicase-like splicing factor (HRH1),...    28   0.41 
tr|B6HII9|B6HII9_PENCH Pc21g10420 protein OS=Penicillium chrysog...    28   0.41 

>tr|Q6K4U8|Q6K4U8_ORYSJ Putative RNA helicase OS=Oryza sativa subsp.
           japonica GN=OSJNBa0010K08.27 PE=4 SV=1
          Length = 1240

 Score = 30.8 bits (68), Expect(2) = 0.053
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           NS   ++SLV+ PISQASAK+RA
Sbjct: 888 NSKQGLDSLVITPISQASAKQRA 910



 Score = 28.5 bits (62), Expect(2) = 0.053
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163  SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
            S   AK R+         KCY          + YTES ++ EM PTT +P+IQ
Sbjct: 902  SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEMSPTT-IPEIQ 943


>tr|A2X3S5|A2X3S5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06862 PE=4 SV=1
          Length = 1240

 Score = 30.8 bits (68), Expect(2) = 0.053
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           NS   ++SLV+ PISQASAK+RA
Sbjct: 888 NSKQGLDSLVITPISQASAKQRA 910



 Score = 28.5 bits (62), Expect(2) = 0.053
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163  SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
            S   AK R+         KCY          + YTES ++ EM PTT +P+IQ
Sbjct: 902  SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEMSPTT-IPEIQ 943


>tr|A3A5W2|A3A5W2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006184 PE=4 SV=1
          Length = 1203

 Score = 30.8 bits (68), Expect(2) = 0.053
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           NS   ++SLV+ PISQASAK+RA
Sbjct: 888 NSKQGLDSLVITPISQASAKQRA 910



 Score = 28.5 bits (62), Expect(2) = 0.053
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163  SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
            S   AK R+         KCY          + YTES ++ EM PTT +P+IQ
Sbjct: 902  SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEMSPTT-IPEIQ 943


>tr|Q0WLB6|Q0WLB6_ARATH Putative ATP-dependent RNA helicase
           OS=Arabidopsis thaliana GN=At3g26560 PE=2 SV=1
          Length = 767

 Score = 30.8 bits (68), Expect(2) = 0.054
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 98  ACRGV*NSNLWVESLVMRPISQASAKRRA 184
           A + V N    +ESLV+ PISQASAK+RA
Sbjct: 466 AKQNVYNPKQGLESLVITPISQASAKQRA 494



 Score = 28.5 bits (62), Expect(2) = 0.054
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163 SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
           S   AK R+         KCY          + YTES ++ EM P TS+P+IQ
Sbjct: 486 SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEM-PPTSIPEIQ 527


>tr|Q0WUZ2|Q0WUZ2_ARATH Putative ATP-dependent RNA helicase
           (Fragment) OS=Arabidopsis thaliana GN=At3g26560 PE=2
           SV=1
          Length = 603

 Score = 30.8 bits (68), Expect(2) = 0.055
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 98  ACRGV*NSNLWVESLVMRPISQASAKRRA 184
           A + V N    +ESLV+ PISQASAK+RA
Sbjct: 245 AKQNVYNPKQGLESLVITPISQASAKQRA 273



 Score = 28.5 bits (62), Expect(2) = 0.055
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163 SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
           S   AK R+         KCY          + YTES ++ EM P TS+P+IQ
Sbjct: 265 SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEM-PPTSIPEIQ 306


>tr|Q0E1V1|Q0E1V1_ORYSJ Os02g0301500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os02g0301500 PE=4 SV=1
          Length = 546

 Score = 30.8 bits (68), Expect(2) = 0.055
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           NS   ++SLV+ PISQASAK+RA
Sbjct: 194 NSKQGLDSLVITPISQASAKQRA 216



 Score = 28.5 bits (62), Expect(2) = 0.055
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 163 SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQ 321
           S   AK R+         KCY          + YTES ++ EM PTT +P+IQ
Sbjct: 208 SQASAKQRAGRAGRTGPGKCY----------RLYTESAYRNEMSPTT-IPEIQ 249


>tr|Q01B22|Q01B22_OSTTA DHX8_ARATH Putative pre-mRNA splicing factor
           ATP-dep (ISS) (Fragment) OS=Ostreococcus tauri
           GN=Ot04g02270 PE=4 SV=1
          Length = 1090

 Score = 30.0 bits (66), Expect(2) = 0.089
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 163 SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQSNYLIL 339
           S   A+ R+         KCY          + YTES  K EMLP TS+P+IQ   L +
Sbjct: 800 SQASARQRAVRAGRTGPGKCY----------RLYTESAFKNEMLP-TSVPEIQRTNLAM 847



 Score = 28.5 bits (62), Expect(2) = 0.089
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           N  + ++SL++ PISQASA++RA
Sbjct: 786 NPKISMDSLIVAPISQASARQRA 808


>tr|A4RVY8|A4RVY8_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_31151 PE=4 SV=1
          Length = 1135

 Score = 29.6 bits (65), Expect(2) = 0.11
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +1

Query: 163 SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQSNYL 333
           S   A+ R+         KCY          + YTES  K EMLP TS+P+IQ   L
Sbjct: 797 SQASARQRAGRAGRTGPGKCY----------RLYTESAFKNEMLP-TSVPEIQRTNL 842



 Score = 28.5 bits (62), Expect(2) = 0.11
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 NSNLWVESLVMRPISQASAKRRA 184
           N  + ++SL++ PISQASA++RA
Sbjct: 783 NPKISMDSLIVAPISQASARQRA 805


>tr|Q5B409|Q5B409_EMENI Putative uncharacterized protein OS=Emericella
            nidulans GN=AN4721.2 PE=4 SV=1
          Length = 1241

 Score = 30.0 bits (66), Expect(2) = 0.15
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 163  SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQSNYL 333
            S  +AK R+         KC+          + YTE+ ++ EMLPTT +PDIQ   L
Sbjct: 892  SQAQAKQRAGRAGRTGPGKCF----------RLYTEAAYQSEMLPTT-IPDIQRQNL 937



 Score = 27.7 bits (60), Expect(2) = 0.15
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 125 LWVESLVMRPISQASAKRRA 184
           L ++SLV+ PISQA AK+RA
Sbjct: 881 LGMDSLVVTPISQAQAKQRA 900


>tr|Q4WV51|Q4WV51_ASPFU RNA helicase-like splicing factor (HRH1),
            putative OS=Aspergillus fumigatus GN=AFUA_5G10830 PE=4
            SV=1
          Length = 1230

 Score = 30.0 bits (66), Expect(2) = 0.15
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 163  SFCKAKSRSATQRACTRRKCYQQRLCQVFQ*KCYTESVHKKEMLPTTSMPDIQSNYL 333
            S  +AK R+         KCY          + YTE+ ++ EMLPTT +P+IQ   L
Sbjct: 881  SQAQAKQRAGRAGRTGPGKCY----------RLYTEAAYQSEMLPTT-IPEIQRQNL 926



 Score = 27.7 bits (60), Expect(2) = 0.15
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 125 LWVESLVMRPISQASAKRRA 184
           L ++SLV+ PISQA AK+RA
Sbjct: 870 LGMDSLVVTPISQAQAKQRA 889