NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912365
Clone id YMU001_000018_C04
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAGAGGGTATAACCATGGATATTGGTTGTGCCTTTGTGGTCTCTGGCTTTTCTTTGAGT
GGTCACTTTACCTTTGCTTATAGCAATTGGTGTTATAAAATATCTTCTTTGCTCCATAAT
ACAACAGATTATATTGACTAATGAACCTCAGCTTTCTACAGGCCTTGTATCTGTAAGATG
AAAATTTGGAAAACTCCTCAAGATACTACACCATGGGAGAGGAGACCTACAGCTACAAAT
GGTCCTTGGTAGGAAAGGACTGACTCCTTGGATATCTTCAAGTGGCAGTAGCCCCTCTCT
TCTATTAACATACTCTACAGCTTCTTCTGCAGTAACCCGGCTGCTCTGATGTACCAATCA
TGTAGGTTGGATACTTTTGGCATTCTCCATATGCTGCCCATTCACCGTAACTCTCATCCT
CGTCTTTGCAATCTCCTACATCTCGCGCTGGGGAATCAAGTGACTGCACATGTATCCACT
TAGGAGTACCT
■■Homology search results ■■ -
sp_hit_id Q19673
Definition sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=Caenorhabditis elegans
Align length 24
Score (bit) 35.8
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912365|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C04.
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=C...    36   0.11 
sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=G...    32   1.2  
sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus G...    32   1.6  
sp|Q7NTL6|HLDD_CHRVO ADP-L-glycero-D-manno-heptose-6-epimerase O...    31   2.7  
sp|O03199|ATP8_CERSI ATP synthase protein 8 OS=Ceratotherium sim...    31   2.7  

>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3
           OS=Caenorhabditis elegans GN=tyr-3 PE=2 SV=5
          Length = 693

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 430 CKDEDESYGEWAAYGECQKYPTYM 359
           C +E+E  G W+A GECQK P YM
Sbjct: 472 CFNENECCGPWSAKGECQKNPVYM 495


>sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=Gp5
           PE=2 SV=1
          Length = 567

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 15  HGYWLCLCGLWLFFEW 62
           H  WLC CGLW F +W
Sbjct: 420 HNPWLCDCGLWRFLQW 435


>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus
           GN=Gp5 PE=2 SV=1
          Length = 567

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 15  HGYWLCLCGLWLFFEW 62
           H  WLC CGLW F +W
Sbjct: 420 HNPWLCDCGLWPFLQW 435


>sp|Q7NTL6|HLDD_CHRVO ADP-L-glycero-D-manno-heptose-6-epimerase
           OS=Chromobacterium violaceum GN=hldD PE=3 SV=1
          Length = 333

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 123 CIMEQRRYFITPIAISKGKVTTQRKARDHKGTTNIHGYTLF 1
           C  E+ ++     A + GK T  ++ R H+G  N++GY+ F
Sbjct: 105 CQHEEIQFLYASSAATYGKGTVFKEERQHEGPLNVYGYSKF 145


>sp|O03199|ATP8_CERSI ATP synthase protein 8 OS=Ceratotherium simum
           GN=MT-ATP8 PE=3 SV=1
          Length = 68

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 82  SNWCYKISSLLHNTTDYID**TSAFYRPCICKMKIWKTPQDTTPWERRPTATNGP 246
           S W   I S++           S +  P   ++K+ KTP  TTPWE + T T  P
Sbjct: 7   STWSITIVSMIITLFIMFQLKLSKYSYPSSPELKLTKTPTHTTPWESKWTKTYLP 61
tr_hit_id A9TA62
Definition tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 68.2
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912365|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C04.
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   2e-10
tr|A9NS85|A9NS85_PICSI Putative uncharacterized protein OS=Picea...    64   3e-09
tr|Q8RWK0|Q8RWK0_ARATH Putative uncharacterized protein At5g1890...    63   8e-09
tr|Q8LAN3|Q8LAN3_ARATH Prolyl 4-hydroxylase alpha subunit-like p...    63   8e-09
tr|B6ZN57|B6ZN57_TOBAC Type 2 proly 4-hydroxylase OS=Nicotiana t...    62   1e-08
tr|B4FLB6|B4FLB6_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1            62   1e-08
tr|A7PMI3|A7PMI3_VITVI Chromosome chr14 scaffold_21, whole genom...    62   1e-08
tr|A7NWB3|A7NWB3_VITVI Chromosome chr5 scaffold_2, whole genome ...    62   1e-08
tr|Q6AVM9|Q6AVM9_ORYSJ Os05g0489100 protein OS=Oryza sativa subs...    60   4e-08
tr|Q5GAV6|Q5GAV6_MAIZE Putative uncharacterized protein OS=Zea m...    60   4e-08
tr|B8APC3|B8APC3_ORYSI Putative uncharacterized protein OS=Oryza...    60   4e-08
tr|A2Y5Z3|A2Y5Z3_ORYSI Putative uncharacterized protein OS=Oryza...    60   4e-08
tr|Q10RA7|Q10RA7_ORYSJ Prolyl 4-hydroxylase, putative, expressed...    59   9e-08
tr|Q0DUV1|Q0DUV1_ORYSJ Os03g0166200 protein OS=Oryza sativa subs...    59   9e-08
tr|Q9SQT3|Q9SQT3_ARATH F24P17.24 protein OS=Arabidopsis thaliana...    58   2e-07
tr|Q8L8T9|Q8L8T9_ARATH Prolyl 4-hydroxylase alpha subunit-like p...    58   2e-07
tr|Q0WP28|Q0WP28_ARATH Putative uncharacterized protein At3g0630...    58   2e-07
tr|A1YAC2|A1YAC2_DIACA Prolyl 4-hydroxylase OS=Dianthus caryophy...    58   2e-07
tr|A2XCX2|A2XCX2_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|B6TED5|B6TED5_MAIZE Prolyl 4-hydroxylase OS=Zea mays PE=2 SV=1      57   4e-07
tr|B4FGT5|B4FGT5_MAIZE Putative uncharacterized protein OS=Zea m...    57   4e-07
tr|Q338D2|Q338D2_ORYSJ Prolyl 4-hydroxylase, putative, expressed...    57   5e-07
tr|Q109P7|Q109P7_ORYSJ Os10g0413500 protein OS=Oryza sativa subs...    57   5e-07
tr|B8BGT2|B8BGT2_ORYSI Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|B6TAV1|B6TAV1_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1            57   5e-07
tr|B4FYU5|B4FYU5_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|A3C4P9|A3C4P9_ORYSJ Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|Q9LSI6|Q9LSI6_ARATH Prolyl 4-hydroxylase alpha subunit-like p...    56   1e-06
tr|Q8VZD7|Q8VZD7_ARATH AT3g28480/MFJ20_16 OS=Arabidopsis thalian...    56   1e-06
tr|Q8L970|Q8L970_ARATH Prolyl 4-hydroxylase, putative OS=Arabido...    56   1e-06

>tr|A9TA62|A9TA62_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_16503 PE=4 SV=1
          Length = 263

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWIHV + + P    G C +E +S  EWAAYGECQK P YM+GT E PGY
Sbjct: 206 KWIHVAAFEKPRPKNGACVNEVDSCEEWAAYGECQKNPAYMVGTKEWPGY 255


>tr|A9NS85|A9NS85_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 208

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPG 335
           KWIHV+S D P +   +C D++   GEWAAYGEC   P YM+G+ + PG
Sbjct: 151 KWIHVESFDKPRQSSDNCVDQNPRCGEWAAYGECNNNPIYMLGSPDLPG 199


>tr|Q8RWK0|Q8RWK0_ARATH Putative uncharacterized protein At5g18900
           OS=Arabidopsis thaliana GN=At5g18900 PE=2 SV=1
          Length = 298

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWIHV S D      G+C D +ES   WA  GEC K P YM+GT+E PGY
Sbjct: 241 KWIHVDSFDRIVTPSGNCTDMNESCERWAVLGECTKNPEYMVGTTELPGY 290


>tr|Q8LAN3|Q8LAN3_ARATH Prolyl 4-hydroxylase alpha subunit-like
           protein OS=Arabidopsis thaliana PE=2 SV=1
          Length = 298

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWIHV S D      G+C D +ES   WA  GEC K P YM+GT+E PGY
Sbjct: 241 KWIHVDSFDRIVTPSGNCTDMNESCERWAVLGECTKNPEYMVGTTELPGY 290


>tr|B6ZN57|B6ZN57_TOBAC Type 2 proly 4-hydroxylase OS=Nicotiana
           tabacum GN=NtP4H2.1 PE=2 SV=1
          Length = 294

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 26/50 (52%), Positives = 31/50 (62%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWIHV S D      G+C D DE+   WAA GEC K P YM+G++  PGY
Sbjct: 237 KWIHVDSFDKTVDTEGNCSDRDENCERWAALGECTKNPEYMLGSAGLPGY 286


>tr|B4FLB6|B4FLB6_MAIZE Oxidoreductase OS=Zea mays PE=2 SV=1
          Length = 308

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 27/50 (54%), Positives = 32/50 (64%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWI V S D      G+C DE+ES  +WAA GEC K P YM+GT+  PGY
Sbjct: 251 KWIRVASFDKVHHPQGNCTDENESCAKWAALGECIKNPEYMVGTTALPGY 300


>tr|A7PMI3|A7PMI3_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020832001
           PE=4 SV=1
          Length = 316

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
 Frame = -2

Query: 481 KWIHVQSLDSPARD--VGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWIHV+S D P++    G+C DEDE   +WAA GEC+K P YM+G+    G+
Sbjct: 255 KWIHVRSFDKPSKRGAQGECVDEDEHCPKWAAVGECEKNPVYMVGSENSDGF 306


>tr|A7NWB3|A7NWB3_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019856001
           PE=4 SV=1
          Length = 298

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 26/49 (53%), Positives = 33/49 (67%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPG 335
           KWIHV S D   +  G+C DE++S   WAA GEC K P YM+G+S+ PG
Sbjct: 241 KWIHVDSFDKILKPGGNCTDENDSCERWAALGECTKNPEYMLGSSDLPG 289


>tr|Q6AVM9|Q6AVM9_ORYSJ Os05g0489100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1119_H02.14 PE=2 SV=1
          Length = 319

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/50 (54%), Positives = 32/50 (64%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGDCKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWI V S D      G+C D++ES  +WAA GEC K P YMIGT+  PGY
Sbjct: 262 KWIRVASFDKVYHTQGNCTDDNESCEKWAALGECIKNPEYMIGTAALPGY 311


>tr|Q5GAV6|Q5GAV6_MAIZE Putative uncharacterized protein OS=Zea mays
           GN=A9002 PE=4 SV=1
          Length = 394

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
 Frame = -2

Query: 481 KWIHVQSLDSPARDVGD---CKDEDESYGEWAAYGECQKYPTYMIGTSEQPGY 332
           KWIHV+S D P +  G    C+D++    +WAA GEC K P YM+GT E PG+
Sbjct: 332 KWIHVRSFDLPVKQPGSSDGCEDDNILCPQWAAVGECAKNPNYMVGTKEAPGF 384