NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912368
Clone id YMU001_000018_C07
Library
Length 577
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGTTTTGCTGCAAGACCAAGATTTTCCCTGCAAGCTATCTCAAAATGAAAGAAGTCCTG
ATGCTGGAGAGCATAAAGAATGGTTCATTAAAGAGGTCAGATGGTCAGCAGCTGCTGAGG
TCGTTCCCAAGCAAAGTTGATGCTGTTTTTGATCTACTACTCCAAATGGGGTGGATTCAG
AGTGACGATGTGCCCCTGAGTGTCAAATAGGGCATGCTTGCTCTACAAAGACAGTAGGAG
CAAGAATTGAGGTTTCCTTACATGATCAAATTTGGTGATCACCAATATATCTTAGGCGAG
CTGATTCTTCTGAAGATAACACCAGAGTACATATACTAAGGCCCGGGGCTCTTTTTGTAC
CACCTGAGGTTTTAATTCTCTATCCTCATTTAGGATGGGCTAGATAGATCCTATAGAGGG
GCGGCACCTTCACAATTGGCAAAGGTTGGGGGCCCGCGCCCTACATTGTATATTATGTGA
GAGTTTACTTGCATTTCTTCTGATTTTGTGTTTGCACATAGGAGACTCTTTATCATTTAA
ACGTGGATGAACGCTTTGTACATACTCGAAGAGATCA
■■Homology search results ■■ -
sp_hit_id Q75LL6
Definition sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
Align length 51
Score (bit) 50.4
E-value 6.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912368|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C07.
         (577 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sati...    50   6e-06
sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidops...    48   3e-05
sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidops...    48   4e-05
sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces ...    43   0.001
sp|Q7KSD8|TAD2A_DROME Transcriptional adapter 2A OS=Drosophila m...    40   0.011
sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sa...    38   0.032
sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos tau...    38   0.032
sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus no...    38   0.042
sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus mus...    38   0.042
sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus ...    37   0.055

>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa
           subsp. japonica GN=ADA2 PE=2 SV=2
          Length = 567

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 22/51 (43%), Positives = 32/51 (62%)
 Frame = +1

Query: 7   CCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLL 159
           CC+ ++ P  YLKM+EVLM E  K    K+ D   L +  P+KVD V+D++
Sbjct: 504 CCQNRLLPNHYLKMQEVLMQEIFKGSVAKKEDAHVLFKVDPAKVDNVYDMV 554


>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis
           thaliana GN=ADA2B PE=1 SV=1
          Length = 487

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 36/60 (60%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWIQ 180
           + C + K+ P  YL+M++V+  E  K    K+SD   L +  P+KVD V+D+L++ G  Q
Sbjct: 427 RLCSEVKLVPPVYLQMQQVMSHEIFKGNVTKKSDAYSLFKIDPTKVDRVYDMLVKKGIAQ 486


>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis
           thaliana GN=ADA2A PE=1 SV=1
          Length = 548

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 23/57 (40%), Positives = 33/57 (57%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMG 171
           + C +T+I P  YLKM ++L  E  K    K+SD     +  PSKVD V+D+L+  G
Sbjct: 487 KMCNETRILPVHYLKMLDILTREIKKGQIKKKSDAYSFFKVEPSKVDRVYDMLVHKG 543


>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces
           cerevisiae GN=ADA2 PE=1 SV=1
          Length = 434

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIK-NGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           Q C + KI P  YL +KEV+  E +K  G+L +S  ++LL   P K + ++D      W+
Sbjct: 375 QLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 434


>sp|Q7KSD8|TAD2A_DROME Transcriptional adapter 2A OS=Drosophila
           melanogaster GN=Rpb4 PE=1 SV=1
          Length = 562

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           + C   ++ P SYL  K  L+ E  K G L+ +D ++L++   +K   ++D LL+ G I
Sbjct: 497 KLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLIKIDVNKTRQIYDFLLEHGHI 555


>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo
           sapiens GN=TADA2L PE=1 SV=2
          Length = 443

 Score = 38.1 bits (87), Expect = 0.032
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           + C   ++ P +YL+ K  L+ E  K G L+ +  + L++   +K   ++D L++ G+I
Sbjct: 382 ELCQMVRLVPGAYLEYKSALLNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 440


>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus
           GN=TADA2L PE=2 SV=1
          Length = 443

 Score = 38.1 bits (87), Expect = 0.032
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           + C   ++ P +YL+ K  L+ E  K G L+ +  + L++   +K   ++D L++ G+I
Sbjct: 382 ELCQMVRLVPGAYLEYKSALLNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 440


>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus
           norvegicus GN=Tada2l PE=2 SV=1
          Length = 443

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           + C   ++ P +YL+ K  L+ E  K G L+ +  + L++   +K   ++D L++ G+I
Sbjct: 382 ELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 440


>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus
           musculus GN=Tada2l PE=1 SV=1
          Length = 443

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           + C   ++ P +YL+ K  L+ E  K G L+ +  + L++   +K   ++D L++ G+I
Sbjct: 382 ELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 440


>sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus
           gallus GN=TADA2L PE=2 SV=1
          Length = 446

 Score = 37.4 bits (85), Expect = 0.055
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           + C   ++ P +YL+ K  L+ E  K G L+ +  + L++   +K   ++D L++ G+I
Sbjct: 385 ELCQMVRLVPGAYLEYKAALVNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 443
tr_hit_id A9NK00
Definition tr|A9NK00|A9NK00_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 63
Score (bit) 73.2
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912368|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C07.
         (577 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NK00|A9NK00_PICSI Putative uncharacterized protein OS=Picea...    73   1e-11
tr|A9U272|A9U272_PHYPA Predicted protein OS=Physcomitrella paten...    72   2e-11
tr|A9RN44|A9RN44_PHYPA Predicted protein OS=Physcomitrella paten...    70   6e-11
tr|A7R7E0|A7R7E0_VITVI Chromosome undetermined scaffold_1717, wh...    55   2e-06
tr|Q8S9F8|Q8S9F8_MAIZE Transcriptional adaptor OS=Zea mays GN=ad...    54   8e-06
tr|Q8S9F7|Q8S9F7_MAIZE Pollen specific transcriptional adaptor O...    54   8e-06
tr|Q8L8G6|Q8L8G6_MAIZE Histone acetyltransferase complex compone...    54   8e-06
tr|B4FW45|B4FW45_MAIZE Putative uncharacterized protein OS=Zea m...    54   8e-06
tr|A5DTM7|A5DTM7_LODEL Transcriptional adapter 2 OS=Lodderomyces...    53   1e-05
tr|A7R4U8|A7R4U8_VITVI Chromosome undetermined scaffold_783, who...    51   4e-05
tr|A3LQF2|A3LQF2_PICST Transcription factor, member of ADA and S...    51   4e-05
tr|B8AJW8|B8AJW8_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|B7EL06|B7EL06_ORYSJ cDNA clone:J023128E10, full insert sequen...    50   7e-05
tr|A3AMQ9|A3AMQ9_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q6BI05|Q6BI05_DEBHA DEHA2G14454p OS=Debaryomyces hansenii GN=...    50   1e-04
tr|A5DMA6|A5DMA6_PICGU Putative uncharacterized protein OS=Pichi...    49   2e-04
tr|A7Q311|A7Q311_VITVI Chromosome chr12 scaffold_47, whole genom...    48   3e-04
tr|A5BQ32|A5BQ32_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q59WH0|Q59WH0_CANAL Putative uncharacterized protein ADA2 OS=...    48   3e-04
tr|A8MRD5|A8MRD5_ARATH Uncharacterized protein At3g07740.3 OS=Ar...    48   4e-04
tr|A7TFV4|A7TFV4_VANPO Putative uncharacterized protein OS=Vande...    45   0.002
tr|B6QP48|B6QP48_PENMA SAGA complex subunit (Ada2), putative OS=...    45   0.003
tr|B8M8R6|B8M8R6_9EURO SAGA complex subunit (Ada2), putative OS=...    45   0.004
tr|Q7RYE8|Q7RYE8_NEUCR Putative uncharacterized protein OS=Neuro...    44   0.006
tr|Q6M9H0|Q6M9H0_NEUCR Related to transcription adaptor ADA2 OS=...    44   0.006
tr|A4SBZ3|A4SBZ3_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.008
tr|A4S6H9|A4S6H9_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.008
tr|A0D499|A0D499_PARTE Chromosome undetermined scaffold_37, whol...    44   0.008
tr|A0D295|A0D295_PARTE Chromosome undetermined scaffold_35, whol...    44   0.008
tr|A6SR58|A6SR58_BOTFB Putative uncharacterized protein OS=Botry...    44   0.008

>tr|A9NK00|A9NK00_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 144

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 33/63 (52%), Positives = 45/63 (71%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWIQ 180
           Q C + ++ PA YLKMKE+LMLES+K  S+KRSD  +  +    KVD V+DLL +MGWIQ
Sbjct: 82  QLCTQNRLLPAHYLKMKELLMLESLKGSSVKRSDAYRFFKVDHDKVDRVYDLLSRMGWIQ 141

Query: 181 SDD 189
            ++
Sbjct: 142 GEE 144


>tr|A9U272|A9U272_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173268 PE=4 SV=1
          Length = 510

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 32/62 (51%), Positives = 44/62 (70%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWIQ 180
           + C + ++ PA YLKMKE LMLES+K G ++RSD  Q+ +  P+K D V++LLL  GWIQ
Sbjct: 440 ELCAQYRLLPAHYLKMKEHLMLESMKAGQVRRSDAYQMFKVDPTKTDRVYELLLSKGWIQ 499

Query: 181 SD 186
            D
Sbjct: 500 GD 501


>tr|A9RN44|A9RN44_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_116913 PE=4 SV=1
          Length = 575

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/60 (51%), Positives = 43/60 (71%)
 Frame = +1

Query: 7   CCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWIQSD 186
           C + ++ PA YL+MKE LMLES+K+G ++RSD  Q+ +  P K D V++LLL  GWIQ D
Sbjct: 507 CVQHRLIPAHYLRMKEHLMLESLKSGQVRRSDAHQMFKVDPVKTDRVYELLLSKGWIQGD 566


>tr|A7R7E0|A7R7E0_VITVI Chromosome undetermined scaffold_1717, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00009957001 PE=4 SV=1
          Length = 483

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWIQ 180
           + CC+ ++ PA YLKM+E L +E  +    K+SD  +L +  PSKVD V+D+L + G  Q
Sbjct: 423 RLCCEIRLAPAHYLKMQETLSVEIFQGNVTKKSDAHRLFKIEPSKVDRVYDMLAKKGIAQ 482


>tr|Q8S9F8|Q8S9F8_MAIZE Transcriptional adaptor OS=Zea mays GN=ada2
           PE=2 SV=1
          Length = 565

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = +1

Query: 7   CCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLL 159
           CC+ ++ P+ YL+M+EVLM E  K   LK+ D   L +  P+KVD+V+D++
Sbjct: 502 CCQNRLLPSHYLRMQEVLMQEIFKGSVLKKEDAHVLFKVDPTKVDSVYDMV 552


>tr|Q8S9F7|Q8S9F7_MAIZE Pollen specific transcriptional adaptor
           OS=Zea mays GN=ada2-p PE=2 SV=1
          Length = 387

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = +1

Query: 7   CCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLL 159
           CC+ ++ P+ YL+M+EVLM E  K   LK+ D   L +  P+KVD+V+D++
Sbjct: 324 CCQNRLLPSHYLRMQEVLMQEIFKGSVLKKEDAHVLFKVDPTKVDSVYDMV 374


>tr|Q8L8G6|Q8L8G6_MAIZE Histone acetyltransferase complex component
           OS=Zea mays GN=hxa103 PE=2 SV=1
          Length = 565

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = +1

Query: 7   CCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLL 159
           CC+ ++ P+ YL+M+EVLM E  K   LK+ D   L +  P+KVD+V+D++
Sbjct: 502 CCQNRLLPSHYLRMQEVLMQEIFKGSVLKKEDAHVLFKVDPTKVDSVYDMV 552


>tr|B4FW45|B4FW45_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 565

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = +1

Query: 7   CCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLL 159
           CC+ ++ P+ YL+M+EVLM E  K   LK+ D   L +  P+KVD+V+D++
Sbjct: 502 CCQNRLLPSHYLRMQEVLMQEIFKGSVLKKEDAHVLFKVDPTKVDSVYDMV 552


>tr|A5DTM7|A5DTM7_LODEL Transcriptional adapter 2 OS=Lodderomyces
           elongisporus GN=LELG_00713 PE=4 SV=1
          Length = 429

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKN-GSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWI 177
           Q C   +IFP  YL +K  LM E++KN G LK+ D +Q L+   +K   +++  +QMGWI
Sbjct: 367 QLCSTLRIFPKPYLAIKNQLMKEAVKNNGVLKKKDARQSLKIDVNKASKIYEFFVQMGWI 426


>tr|A7R4U8|A7R4U8_VITVI Chromosome undetermined scaffold_783, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00004703001 PE=4 SV=1
          Length = 642

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 24/60 (40%), Positives = 37/60 (61%)
 Frame = +1

Query: 1   QFCCKTKIFPASYLKMKEVLMLESIKNGSLKRSDGQQLLRSFPSKVDAVFDLLLQMGWIQ 180
           + C + ++ PA YLKM+E L +E  +    K+SD  +L +  PSKVD V+D+L + G  Q
Sbjct: 582 RLCSEIRLAPAHYLKMQETLSVEIFQGNVSKKSDAHRLFKIEPSKVDRVYDMLAKKGIAQ 641