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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912369
Clone id YMU001_000018_C08
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGGCCCAAGCCCAGGCCCAGGCCTCAGTGCTCAGTCTTATGATATATACTAGACTCACT
CTTATATATATACCCTACTCCCTCAAGAGAGAATGAGAGCATGTGGGACAAGTCCTCCAC
TCTCCTCCTTTCTCTTCCCACTTGCACCCTTAGACTTTCTAGTTTGGGCCTAGTTCCCTA
CTGGAAATTGACAGTTTGAGGGATTCCGAGGGCATAGAGTGACCAAACGGAGGGCTGTAA
AGCACGGCACGACCCTCTGACCGATACGCTCGTTTCGAGCTATCACACGGCCCATTCCAC
GACACGCTCTAAAAAATCTAGCAAAAAAACAAACAAAAAACACGCTAAAAACTAGTCACA
AGGCCTCCTAGAGCAGCTTTTTTGACACCTTAGGGTATCAAAAGCACATGCACTTACGCT
CTGGGCGGGTGCTAGAACACGAGCATATTGAGGGTGCCTCTGTTCATACGGACACCCATT
ACCCATCCACGATAAGCTCTAGACCCTCAGCGGGGACACAAGGTA
■■Homology search results ■■ -
sp_hit_id Q8TGG8
Definition sp|Q8TGG8|GDA1_ASPFU Probable guanosine-diphosphatase OS=Aspergillus fumigatus
Align length 59
Score (bit) 30.0
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912369|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C08.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TGG8|GDA1_ASPFU Probable guanosine-diphosphatase OS=Aspergi...    30   7.0  
sp|P18546|COA1_PAVPN Coat protein VP1 OS=Porcine parvovirus (str...    30   7.0  
sp|P52501|COA1_PAVPK Coat protein VP1 OS=Porcine parvovirus (str...    30   7.0  
sp|P33484|COA1_PAVP9 Coat protein VP1 OS=Porcine parvovirus (str...    30   7.0  
sp|Q5F2L2|FUT10_MOUSE Alpha-(1,3)-fucosyltransferase 10 OS=Mus m...    30   9.1  

>sp|Q8TGG8|GDA1_ASPFU Probable guanosine-diphosphatase
           OS=Aspergillus fumigatus GN=gda1 PE=3 SV=2
          Length = 503

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 232 LRLVTLCPRNPSNCQFPVGN*AQTRKSKGASGKRKEESGGLVPHALIL---S*GSRVYI 65
           L L+ + P  P +  FP G  + +  +KG   K  +    L+ +AL++   S GSR+++
Sbjct: 21  LMLLWISPSRPMHPSFPQGQPSTSAPAKGKCSKPHDPKKPLIQYALMIDAGSQGSRIHV 79


>sp|P18546|COA1_PAVPN Coat protein VP1 OS=Porcine parvovirus (strain
           NADL-2) PE=1 SV=1
          Length = 729

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 RPIPRHALKNLAKKQTKNTLKTS 356
           RP PRH   NLAKK+ K T  T+
Sbjct: 125 RPAPRHIFINLAKKKAKGTSNTN 147


>sp|P52501|COA1_PAVPK Coat protein VP1 OS=Porcine parvovirus (strain
           Kresse) PE=3 SV=1
          Length = 729

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 RPIPRHALKNLAKKQTKNTLKTS 356
           RP PRH   NLAKK+ K T  T+
Sbjct: 125 RPAPRHIFINLAKKKAKGTSNTN 147


>sp|P33484|COA1_PAVP9 Coat protein VP1 OS=Porcine parvovirus (strain
           90HS) PE=3 SV=1
          Length = 729

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 RPIPRHALKNLAKKQTKNTLKTS 356
           RP PRH   NLAKK+ K T  T+
Sbjct: 125 RPAPRHIFINLAKKKAKGTSNTN 147


>sp|Q5F2L2|FUT10_MOUSE Alpha-(1,3)-fucosyltransferase 10 OS=Mus
           musculus GN=Fut10 PE=2 SV=1
          Length = 481

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +3

Query: 204 FRGHRVTKRRAVKHGTTL*PIRSFRAITRPIPRHALKNLA---KKQTKNTLKTSHKAS*S 374
           F+ H +T R  + +GT       F   + P+PR A  + A   ++  KN  K  HK   +
Sbjct: 113 FQHHPMT-RAFLFYGT------DFNIDSLPLPREAHHDWALFHEESPKNNYKLFHKPVIT 165

Query: 375 SFFDTLGYQKHMHLRSGRVLEHEHIEGASVHTDTHY 482
            F  T  + +H HL     L  +++EG  V     Y
Sbjct: 166 LFNHTATFSRHSHL----PLTTQYLEGVDVLKSLRY 197
tr_hit_id Q1QE12
Definition tr|Q1QE12|Q1QE12_PSYCK OmpA/MotB OS=Psychrobacter cryohalolentis (strain K5)
Align length 97
Score (bit) 33.1
E-value 8.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912369|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_C08.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1QE12|Q1QE12_PSYCK OmpA/MotB OS=Psychrobacter cryohalolentis...    33   8.6  

>tr|Q1QE12|Q1QE12_PSYCK OmpA/MotB OS=Psychrobacter cryohalolentis
           (strain K5) GN=Pcryo_0307 PE=3 SV=1
          Length = 533

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 25/97 (25%), Positives = 40/97 (41%)
 Frame = +3

Query: 216 RVTKRRAVKHGTTL*PIRSFRAITRPIPRHALKNLAKKQTKNTLKTSHKAS*SSFFDTLG 395
           ++ +  A KH   +   R   A+  P+  H +K+LA           +  S         
Sbjct: 73  QIARELAGKHNVDVTAARGLIAMAAPLAYHEIKSLAGTTPVPQFLNENIDS--------- 123

Query: 396 YQKHMHLRSGRVLEHEHIEGASVHTDTHYPSTISSRP 506
           YQ+H+ + +  VL    I  A V T TH   T+S+ P
Sbjct: 124 YQRHIPVWATAVLPVGVIAAAPVSTGTHISDTVSTAP 160