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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912382
Clone id YMU001_000018_D09
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGAACATTATGGTTCGGGGTGCTCCTTCGAAAGAGGAGACGACCTTGGAGTGGGTGAAGC
TGGTCAGCGCAGAACTTAGCGTTTGCGTGCATCCTGCCTGGTCCAATAACGTCTTTAGAG
GAGTTCAAGAGTCTCTAAATTCTCTGCTCTTCCGACATGTAGACATTGCAGCGTCACCAA
TAGCCGGGGCAGTGGAATCTCGATCCTAAAGATGCTCAGAAATCTGTTGCAAAGCACGTA
GAAGATTCTTCCAAGTTGTAGCACGGGAAGCTTGGCCAAAATTTGAGTAGTTGTATCAAA
CTAAATGCTCATCCTGAAGCTGTTGTATGAGAGCAATAAGAGCATGAAAAGAAGGGAACT
GCGAGCACTACAATTGTTCTCAAGAGCAAGGATCTGACAGGGGTAACCGCCTCATGTAGG
TTGCAAAGGTACAATGAGGATTTACACGGGGTCGTGCTTGCTTATCTGGATCTCAAAATC
CCAAGTAGTAAAGCCAAGATTCTTTGTGGGCTGTCGCCATATTTTAGGGTCAATCTCACT
GCTAAGCTACTATGC
■■Homology search results ■■ -
sp_hit_id P60644
Definition sp|P60644|LRGB_STAAW Antiholin-like protein lrgB OS=Staphylococcus aureus (strain MW2)
Align length 32
Score (bit) 30.4
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912382|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_D09.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60644|LRGB_STAAW Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|A8Z0M6|LRGB_STAAT Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|Q6GCK9|LRGB_STAAS Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|Q6GK49|LRGB_STAAR Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|P60642|LRGB_STAAN Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|P60641|LRGB_STAAM Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|A6QDN7|LRGB_STAAE Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|Q5HJB3|LRGB_STAAC Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|Q2YV65|LRGB_STAAB Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|A5IPD2|LRGB_STAA9 Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|P60643|LRGB_STAA8 Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|Q2FK07|LRGB_STAA3 Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|A6TY48|LRGB_STAA2 Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  
sp|A7WXS7|LRGB_STAA1 Antiholin-like protein lrgB OS=Staphylococc...    30   6.1  

>sp|P60644|LRGB_STAAW Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain MW2) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|A8Z0M6|LRGB_STAAT Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain USA300 / TCH1516) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|Q6GCK9|LRGB_STAAS Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain MSSA476) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|Q6GK49|LRGB_STAAR Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain MRSA252) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|P60642|LRGB_STAAN Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain N315) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|P60641|LRGB_STAAM Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain Mu50 / ATCC 700699) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|A6QDN7|LRGB_STAAE Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain Newman) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|Q5HJB3|LRGB_STAAC Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain COL) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|Q2YV65|LRGB_STAAB Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain bovine RF122 / ET3-1) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183


>sp|A5IPD2|LRGB_STAA9 Antiholin-like protein lrgB OS=Staphylococcus
           aureus (strain JH9) GN=lrgB PE=3 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 279 LAKLPVLQLGRIFYVLCNRFLSIFRIEIPLPR 184
           L  L V+  G I Y L N+FL +FRI  P+ R
Sbjct: 152 LTSLAVILNGVIIYALGNKFLKLFRITNPIAR 183
tr_hit_id B8LKX1
Definition tr|B8LKX1|B8LKX1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 47
Score (bit) 55.1
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912382|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_D09.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LKX1|B8LKX1_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|A7NSY2|A7NSY2_VITVI Chromosome chr18 scaffold_1, whole genome...    49   2e-04
tr|Q9LR06|Q9LR06_ARATH F10A5.14 OS=Arabidopsis thaliana PE=4 SV=1      45   0.003
tr|Q949T5|Q949T5_ARATH Putative uncharacterized protein At1g7567...    44   0.006
tr|Q8H1F8|Q8H1F8_ARATH Putative uncharacterized protein At1g7567...    44   0.006
tr|A9SCR7|A9SCR7_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.010
tr|A7QBB6|A7QBB6_VITVI Chromosome chr4 scaffold_73, whole genome...    34   6.0  
tr|A8N6U3|A8N6U3_COPC7 Putative uncharacterized protein OS=Copri...    34   6.0  
tr|A3B8S6|A3B8S6_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.1  
tr|Q0IMX1|Q0IMX1_ORYSJ Os12g0533600 protein OS=Oryza sativa subs...    33   7.9  
tr|B8BM96|B8BM96_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.9  
tr|A3CI12|A3CI12_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.9  

>tr|B8LKX1|B8LKX1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 263

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 30/47 (63%), Positives = 33/47 (70%)
 Frame = +1

Query: 412 SCRLQRYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           S  L RYNE+  GVVLAY DLKI +  AKIL GLSPY  + L AKLL
Sbjct: 47  SSLLLRYNEEFDGVVLAYFDLKICNWTAKILNGLSPYLSLKLKAKLL 93



 Score = 34.3 bits (77), Expect = 4.6
 Identities = 16/38 (42%), Positives = 28/38 (73%)
 Frame = +3

Query: 45  LEWVKLVSAELSVCVHPAWSNNVFRGVQESLNSLLFRH 158
           +E + +V A+LS  +HP+ +++V +GV E L+SLL R+
Sbjct: 16  MEGLSVVKADLSAFLHPSKTDDVQQGVLELLSSLLLRY 53


>tr|A7NSY2|A7NSY2_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014457001
           PE=4 SV=1
          Length = 189

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 28/47 (59%), Positives = 32/47 (68%)
 Frame = +1

Query: 412 SCRLQRYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           S  L ++NE   GVVLAY D+ IPS  AKIL G+ PYF V L AKLL
Sbjct: 32  SSLLFKFNEIFDGVVLAY-DVDIPSKDAKILPGIHPYFGVRLKAKLL 77


>tr|Q9LR06|Q9LR06_ARATH F10A5.14 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 168

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 23/42 (54%), Positives = 28/42 (66%)
 Frame = +1

Query: 427 RYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           RYNE   GV+LAY D  + S +AKIL GL PYF V +  +LL
Sbjct: 9   RYNETFDGVLLAY-DATVKSKQAKILTGLHPYFGVRVNTRLL 49


>tr|Q949T5|Q949T5_ARATH Putative uncharacterized protein At1g75670
           OS=Arabidopsis thaliana GN=At1g75670 PE=2 SV=1
          Length = 196

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 412 SCRLQRYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           S  L +YNE   GV+LAY D  + S +AKIL GL PYF V +  +LL
Sbjct: 32  SSLLFQYNETFDGVLLAY-DATVKSKQAKILTGLHPYFGVRVNTRLL 77



 Score = 41.6 bits (96), Expect = 0.029
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 45  LEWVKLVSAELSVCVHPAWSNNVFRGVQESLNSLLFRH 158
           +E +KL  AEL + +HP+ S NVF+G+   L+SLLF++
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQY 38


>tr|Q8H1F8|Q8H1F8_ARATH Putative uncharacterized protein At1g75670
           OS=Arabidopsis thaliana GN=At1g75670 PE=2 SV=1
          Length = 196

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +1

Query: 412 SCRLQRYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           S  L +YNE   GV+LAY D  + S +AKIL GL PYF V +  +LL
Sbjct: 32  SSLLFQYNETFDGVLLAY-DATVKSKQAKILTGLHPYFGVRVNTRLL 77



 Score = 41.6 bits (96), Expect = 0.029
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 45  LEWVKLVSAELSVCVHPAWSNNVFRGVQESLNSLLFRH 158
           +E +KL  AEL + +HP+ S NVF+G+   L+SLLF++
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQY 38


>tr|A9SCR7|A9SCR7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127692 PE=4 SV=1
          Length = 228

 Score = 43.1 bits (100), Expect = 0.010
 Identities = 24/44 (54%), Positives = 27/44 (61%)
 Frame = +1

Query: 421 LQRYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           L R+NE   G VLA+ D KI    A IL GL+PYF V LT  LL
Sbjct: 35  LLRFNEHFEGSVLAHSDTKIQGRTAIILEGLTPYFCVRLTTTLL 78


>tr|A7QBB6|A7QBB6_VITVI Chromosome chr4 scaffold_73, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034891001
           PE=4 SV=1
          Length = 660

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = -3

Query: 286 SNFGQASRATTWKNLLRALQQISEHL*DRDSTAPAIGDAAMSTCRK-----SREFRDS*T 122
           +NF QA R+ TW N ++   QISE        APA+ DA  S         S+   D+  
Sbjct: 571 TNFSQAPRSETWNNSIQPPDQISE--------APAVQDATSSRVASSGLVFSKTTADALE 622

Query: 121 PLKTLLDQAGCTQTLSSALTSFTHSKVVSSFEGAPR 14
            LK   D       +   L S T + + S+ E + R
Sbjct: 623 ELKVYKDMK--NDLIKQGLRSQTSTNLASAAEVSSR 656


>tr|A8N6U3|A8N6U3_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_06815 PE=4 SV=1
          Length = 327

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +3

Query: 57  KLVSAELSVCVHPAWSNNVFRGVQESLNSLLFRHV 161
           ++VSA LS+ V P ++ N   GV+E L+SL+ R+V
Sbjct: 43  QVVSATLSISVPPVFAKNPQAGVEEMLDSLIMRYV 77


>tr|A3B8S6|A3B8S6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019448 PE=4 SV=1
          Length = 271

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 427 RYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           RY +   GV+LA+ +  + S + KIL GL PYF V + A LL
Sbjct: 79  RYEDRFDGVLLAH-EATVESEQGKILNGLVPYFGVPVHANLL 119


>tr|Q0IMX1|Q0IMX1_ORYSJ Os12g0533600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0533600 PE=4 SV=1
          Length = 195

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +1

Query: 412 SCRLQRYNEDLHGVVLAYLDLKIPSSKAKILCGLSPYFRVNLTAKLL 552
           S  L  Y +   GV+LA+ ++ +   +AKIL GL PYF V + A LL
Sbjct: 32  STTLFSYEDRFEGVLLAH-EVVVNGDRAKILNGLVPYFGVPVHANLL 77