BP912387 |
Clone id |
YMU001_000018_E02 |
Library |
YMU01 |
Length |
503 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000018_E02. |
Accession |
BP912387 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACATAGAATCTACATCCAACTTCTGGTTGTTCGAGCCACCTGACATCCATGCATATTATC GTACACATCCCTCCCACAAGCTCAAAGGGGAGAAGGAAAACAACGATTGCCCTTGCTCAT CCAGAGGTGGCAGCAACTAAGATCCTGCAGACAGACAGATGGCAGATTCTCTCAAATACT CAAACCTTTTGGCTCATGGCTTCCAGATTCCTAGTCGCACAAATAGTTGGACGCCTTGAA GGTGTGAAGACCCACGGTGTAGTCAGTATTACCCTCTGTACCAGAAAGAAGGGTAATGCC TGACAATGACTGTCCTGTCCCAGAAAACTCTATGGATGCTATCACCTTGATCTTTGGTAG AAGCTTTCCCTCCACATCTGCATCACTCAAATCAGAATCCAAAGGCATCTGCGCGCGAAG ACAACCTGGCGGACCTTGCAACGGAACCTCCTGCACATGCCAACTGATTGCCTTCAAATG CTGATTGAGTAACCCCTTCGGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q810L3 |
Definition |
sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus |
Align length |
60 |
Score (bit) |
32.0 |
E-value |
1.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6Z0T9 |
Definition |
tr|Q6Z0T9|Q6Z0T9_ORYSJ Os08g0243900 protein OS=Oryza sativa subsp. japonica |
Align length |
96 |
Score (bit) |
75.1 |
E-value |
2.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912387|Adiantum capillus-veneris mRNA, clone: YMU001_000018_E02. (503 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6Z0T9|Q6Z0T9_ORYSJ Os08g0243900 protein OS=Oryza sativa subs... 75 2e-12 tr|A3BR28|A3BR28_ORYSJ Putative uncharacterized protein OS=Oryza... 75 2e-12 tr|A2YSV1|A2YSV1_ORYSI Putative uncharacterized protein OS=Oryza... 75 2e-12 tr|Q9FKM4|Q9FKM4_ARATH Arabidopsis thaliana genomic DNA, chromos... 74 4e-12 tr|A7Q6E7|A7Q6E7_VITVI Chromosome chr11 scaffold_56, whole genom... 74 4e-12 tr|A5AR42|A5AR42_VITVI Putative uncharacterized protein OS=Vitis... 74 4e-12 tr|A9U164|A9U164_PHYPA Predicted protein OS=Physcomitrella paten... 68 2e-10 tr|Q4RPY1|Q4RPY1_TETNG Chromosome 17 SCAF15006, whole genome sho... 37 0.69 tr|B6IPQ3|B6IPQ3_RHOCS Phosphoglycerate mutase family protein OS... 37 0.69 tr|A9IF41|A9IF41_BORPD AcrB/AcrD/AcrF protein family OS=Bordetel... 37 0.69 tr|Q1GPY7|Q1GPY7_SPHAL Heavy metal efflux pump CzcA OS=Sphingopy... 36 1.2 tr|B4RIK8|B4RIK8_PHEZH Heavy metal efflux pump CzcA OS=Phenyloba... 36 1.2 tr|Q3U233|Q3U233_MOUSE Putative uncharacterized protein OS=Mus m... 35 2.6 tr|Q55G74|Q55G74_DICDI Putative uncharacterized protein OS=Dicty... 34 3.4 tr|Q1IXQ8|Q1IXQ8_DEIGD Peptidase S8, subtilisin-like protein OS=... 33 5.8 tr|Q3V0M3|Q3V0M3_MOUSE Putative uncharacterized protein OS=Mus m... 33 7.6 tr|A1TXN0|A1TXN0_MARAV Phage integrase family protein OS=Marinob... 33 9.9
>tr|Q6Z0T9|Q6Z0T9_ORYSJ Os08g0243900 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0070J06.32 PE=2 SV=1 Length = 641
Score = 75.1 bits (183), Expect = 2e-12 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKIKVIASIEFS 322 PK +LN+ + + WH+ ++PL+GP G LRA+MP+D D D ++E V+ ++F+ Sbjct: 553 PKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELE--------VVGMVKFA 604
Query: 321 GTGQ-SLSGITLLSGTEGNTDYTVGLHTFKASNYLC 217 G +LSGI L T+G + HTF + +YLC Sbjct: 605 YQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLC 640
>tr|A3BR28|A3BR28_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025500 PE=4 SV=1 Length = 622
Score = 75.1 bits (183), Expect = 2e-12 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKIKVIASIEFS 322 PK +LN+ + + WH+ ++PL+GP G LRA+MP+D D D ++E V+ ++F+ Sbjct: 534 PKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELE--------VVGMVKFA 585
Query: 321 GTGQ-SLSGITLLSGTEGNTDYTVGLHTFKASNYLC 217 G +LSGI L T+G + HTF + +YLC Sbjct: 586 YQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLC 621
>tr|A2YSV1|A2YSV1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28397 PE=4 SV=1 Length = 640
Score = 75.1 bits (183), Expect = 2e-12 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKIKVIASIEFS 322 PK +LN+ + + WH+ ++PL+GP G LRA+MP+D D D ++E V+ ++F+ Sbjct: 552 PKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELE--------VVGMVKFA 603
Query: 321 GTGQ-SLSGITLLSGTEGNTDYTVGLHTFKASNYLC 217 G +LSGI L T+G + HTF + +YLC Sbjct: 604 YQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLC 639
>tr|Q9FKM4|Q9FKM4_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2 (Putative uncharacterized protein At5g57460) (At5g57460) OS=Arabidopsis thaliana GN=At5g57460 PE=2 SV=1 Length = 646
Score = 73.9 bits (180), Expect = 4e-12 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKIKVIASIEFS 322 PK +LN+ + + W + E+PL G PG LRA+MP+DSD S+ + + +I ++FS Sbjct: 558 PKAILNRTDRELKWQIPEIPLNGSPGRLRARMPIDSDNSEEEPD--------IICYVKFS 609
Query: 321 GTGQ-SLSGITLLSGTEGNTDYTVGLHTFKASNYLCD 214 G SLSGI+L + EGNTD+ H ++ Y+C+ Sbjct: 610 VQGNTSLSGISLRAAAEGNTDFFEVDHRYETGVYMCN 646
>tr|A7Q6E7|A7Q6E7_VITVI Chromosome chr11 scaffold_56, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031365001 PE=4 SV=1 Length = 597
Score = 73.9 bits (180), Expect = 4e-12 Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKIKVIASIEFS 322 PK +LN+ + + WHV E+P +G PG LR +MP+DS+ D E I+V+ ++FS Sbjct: 507 PKAVLNRSERELRWHVPEIPQKGAPGRLRVRMPVDSNEEDGGEE------IEVVGYVKFS 560
Query: 321 GTG-QSLSGITLLSGTEGNTDYTVGLHTFKASNYLCD 214 G +SLSG++L +EG TD+ H +++ Y+C+ Sbjct: 561 AQGMRSLSGVSLRPASEGKTDFYEVNHRYESGVYMCN 597
>tr|A5AR42|A5AR42_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027870 PE=4 SV=1 Length = 617
Score = 73.9 bits (180), Expect = 4e-12 Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKIKVIASIEFS 322 PK +LN+ + + WHV E+P +G PG LR +MP+DS+ D E I+V+ ++FS Sbjct: 527 PKAVLNRSERELRWHVPEIPQKGAPGRLRVRMPVDSNEEDGGEE------IEVVGYVKFS 580
Query: 321 GTG-QSLSGITLLSGTEGNTDYTVGLHTFKASNYLCD 214 G +SLSG++L +EG TD+ H +++ Y+C+ Sbjct: 581 AQGMRSLSGVSLRPASEGKTDFYEVNHRYESGVYMCN 617
>tr|A9U164|A9U164_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_227387 PE=4 SV=1 Length = 631
Score = 68.2 bits (165), Expect = 2e-10 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Frame = -3
Query: 501 PKGLLNQHLKAISWHVQEVPLQGPPGCLRAQMPLDSDL-SDADVEGKLLPKIKVIASIEF 325 P+ L++ LK + W + + PP LRAQ+P+D+ S+ D G PKI+V + F Sbjct: 537 PRAALDRTLKEVRWLIPSIEAASPPDWLRAQVPVDAKARSENDANGHEEPKIRV--RVLF 594
Query: 324 SGTGQSLSGITLLSGTEGNTDYTVGLHTFKASNYLC 217 S +G +LSG+ + +TD+ VG H+FKA +LC Sbjct: 595 SCSGPTLSGLNIAPMKADSTDFIVGEHSFKAGQFLC 630
>tr|Q4RPY1|Q4RPY1_TETNG Chromosome 17 SCAF15006, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00030878001 PE=4 SV=1 Length = 1396
Score = 36.6 bits (83), Expect = 0.69 Identities = 23/64 (35%), Positives = 28/64 (43%) Frame = +2
Query: 272 PSVPERRVMPDNDCPVPENSMDAITLIFGRSFPSTSASLKSESKGICARRQPGGPCNGTS 451 P PE V+ D D V S + T GR+ S A K S G C +PG NG Sbjct: 340 PGNPEVLVVEDADIDVDVFSYNLGTCASGRNTCSQYADCKDYSSGFCCHCRPGFYGNGIQ 399
Query: 452 CTCQ 463 CT + Sbjct: 400 CTAE 403
>tr|B6IPQ3|B6IPQ3_RHOCS Phosphoglycerate mutase family protein OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=RC1_2369 PE=4 SV=1 Length = 209
Score = 36.6 bits (83), Expect = 0.69 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3
Query: 462 WHVQEVPLQGPPGCLRAQMPLDSDLSDADVEGKLLPKI 349 W V+ P+ PPG + Q+ L +DLSD D L P++ Sbjct: 12 WWVRHAPVAAPPGVIAGQLDLPADLSDRDGLAALAPRL 49
>tr|A9IF41|A9IF41_BORPD AcrB/AcrD/AcrF protein family OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=czcA PE=4 SV=1 Length = 1085
Score = 36.6 bits (83), Expect = 0.69 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = -1
Query: 209 NLEAMSQKV*VFERICHLSVCRILVAATSG*ARAIVVFL-LPFELVGGMCTIICMDVRWL 33 +L+A SQ++ + IC L++ +L A G RA+ VFL +P L GG+ T+ + + Sbjct: 895 SLQAASQRLSIVVPICFLAIFVLLFMALGGFGRALSVFLAVPLGLAGGVFTLAMTGINFS 954
Query: 32 EQPEVG 15 VG Sbjct: 955 VSAAVG 960
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