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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912388
Clone id YMU001_000018_E03
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCTAGATCAAGCAGACTAGCCTCTCCAATGCTGCTGCTTCAAAATCCATAAACTGTAGG
GTATCTTGATCTTGCATTTCACAATTTATCTATCCTTCCTCTAGTATGGTTTCTTGTGCC
GTGGTTGTTGCTTGAGCTTTCCTCATTTCTGATTTTAGGTGGTCTATTTCCTATTGGTAT
CTCTCCTCTCACTACATGAACCGGATAGAGAGCTCTCTTCTCTGCATTTGCTCTAACTTT
AGCTCCATTGCAAGGTCTTTAACTTTTTGTTCCACTGCTTTGTATGCCTTATCTGTGCCT
TGTAGTGTGGCTACGGTTGTCCTTGAGCTGGTTTAGCAATGTATTTGCTCTTGGCACCTG
GGTTCTGATTATACCAATTGAGTATTTTCAATGTTTAGATGGATTTGGAGTATGTCAATT
CTTGAAGTAGATTCCTATAGAGTTGAAGTGGCCTTTGTGACTTGTTGCTCTTGTTACTGA
TTTCTTGTCTAGAGAGTTTCCAGATCCACTCATGTCTTTGCAATTAGTTTAGCCAATTCA
TTTTCTTTGAATTCCACGGGTTCTTTGTATGATTCGACACAAACATTGGCCATGTTTAGA
CTTTCCT
■■Homology search results ■■ -
sp_hit_id Q9LAI0
Definition sp|Q9LAI0|T2BLB_BACSQ Type-2 restriction enzyme BslI subunit beta OS=Bacillus sp. (strain NEB-606)
Align length 85
Score (bit) 31.2
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912388|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E03.
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LAI0|T2BLB_BACSQ Type-2 restriction enzyme BslI subunit bet...    31   4.3  
sp|Q9UPQ0|LIMC1_HUMAN LIM and calponin homology domains-containi...    31   5.6  
sp|Q9YA66|THSB_AERPE Thermosome subunit beta OS=Aeropyrum pernix...    30   7.3  
sp|A7H9S6|SYE_ANADF Glutamyl-tRNA synthetase OS=Anaeromyxobacter...    30   9.6  
sp|A3EXG7|NS3_BCHK9 Non-structural protein 3 OS=Bat coronavirus ...    30   9.6  

>sp|Q9LAI0|T2BLB_BACSQ Type-2 restriction enzyme BslI subunit beta
           OS=Bacillus sp. (strain NEB-606) GN=bslIRbeta PE=1 SV=1
          Length = 301

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = -1

Query: 577 SNHTKNP---WNSKKMNWLN*LQRHEWIWK-LSRQEISNKSNKSQRPLQLYRNLLQELTY 410
           S H   P     + K+N L+  +   W+W  +S  E  N+    +    +Y   L+  +Y
Sbjct: 162 STHFSTPSFRQGNNKLNGLSKDKNDNWVWSGVSFNEFVNEKGMDKLSCPIYDIELE--SY 219

Query: 409 SKSI*TLKILNWYNQNPGAKSKYIA 335
           +K I  LK   +Y  +PG K++  A
Sbjct: 220 TKKIQELKFSLFYRYSPGRKNQVSA 244


>sp|Q9UPQ0|LIMC1_HUMAN LIM and calponin homology domains-containing
           protein 1 OS=Homo sapiens GN=LIMCH1 PE=1 SV=3
          Length = 1083

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 26/84 (30%), Positives = 38/84 (45%)
 Frame = -3

Query: 362 PRCQEQIHC*TSSRTTVATLQGTDKAYKAVEQKVKDLAMELKLEQMQRRELSIRFM**EE 183
           P    Q+   +S ++ V T Q    A+   E++ +    + K +Q Q R L       +E
Sbjct: 742 PNLNSQVDSPSSEKSPVTTPQFKFWAWDPEEERRR----QEKWQQEQERLL-------QE 790

Query: 182 RYQ*EIDHLKSEMRKAQATTTAQE 111
           RYQ E D LK E  KAQ     +E
Sbjct: 791 RYQKEQDKLKEEWEKAQKEVEEEE 814


>sp|Q9YA66|THSB_AERPE Thermosome subunit beta OS=Aeropyrum pernix
           GN=thsB PE=3 SV=2
          Length = 548

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 605 ESLNMANVCVESYKEPVEFKENELAKLIAKT 513
           E+L  A+  +ES  EPV + + E  KLIAKT
Sbjct: 137 EALRKASEVIESIAEPVSYDDVEKLKLIAKT 167


>sp|A7H9S6|SYE_ANADF Glutamyl-tRNA synthetase OS=Anaeromyxobacter
           sp. (strain Fw109-5) GN=gltX PE=3 SV=1
          Length = 471

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 568 TKNPWNSKKMNWLN*LQRHEWIWKLSRQEISNKS 467
           T   +N  KM W+N    HEW+ KLS +E++ ++
Sbjct: 301 TAGVFNQDKMAWVN----HEWLKKLSDEELARRA 330


>sp|A3EXG7|NS3_BCHK9 Non-structural protein 3 OS=Bat coronavirus
           HKU9 GN=3 PE=4 SV=1
          Length = 220

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 263 LFVPLLCMPYLCLVVWLRLSLSWFSNVFA 349
           LF  L C+  +C+V+WL  S +++ ++FA
Sbjct: 58  LFHILFCLSQVCMVIWLIFSANFYVSLFA 86
tr_hit_id A4HIW7
Definition tr|A4HIW7|A4HIW7_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis
Align length 35
Score (bit) 34.7
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912388|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E03.
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4HIW7|A4HIW7_LEIBR Putative uncharacterized protein OS=Leish...    35   4.4  
tr|Q2H4K3|Q2H4K3_CHAGB Predicted protein OS=Chaetomium globosum ...    35   4.4  
tr|Q00TM1|Q00TM1_OSTTA Myosin class II heavy chain (ISS) OS=Ostr...    35   4.4  
tr|A2ERU1|A2ERU1_TRIVA Putative uncharacterized protein OS=Trich...    35   4.4  
tr|A0CY19|A0CY19_PARTE Chromosome undetermined scaffold_30, whol...    34   7.6  
tr|Q2GRG9|Q2GRG9_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.8  
tr|Q4N897|Q4N897_THEPA Putative uncharacterized protein OS=Theil...    33   9.9  

>tr|A4HIW7|A4HIW7_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM31_V2.0030 PE=4 SV=1
          Length = 1052

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 266 FVPLLCMPYLCLVVWLRLSLSWFSNVFALGTWVLI 370
           +V  +   Y+ L +W  L L W + V A+GTW L+
Sbjct: 819 YVDRIAADYIVLPLWFCLLLRWITGVLAVGTWALV 853


>tr|Q2H4K3|Q2H4K3_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_06412 PE=4 SV=1
          Length = 580

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
 Frame = -2

Query: 375 GIIRTQVPRANTLLNQ-LKDNRSHTTRHR*GIQSSGTKS*RPCNGAKVRANAEKRA---- 211
           G + T  P      +Q L   R H    R G+Q S T S     G + + NAE  A    
Sbjct: 136 GRVSTDTPETAAARDQRLTIQRRHGVERRHGVQPSQTPSLSSLIGREQQLNAEDEAPTTS 195

Query: 210 ---LYPVHVVRGE------------IPIGNRPPKIRNEESSSNNHGTRNHTRGR 94
              L PV    G+            +P   RPPK R+  +SS    +R   RGR
Sbjct: 196 RCDLLPVQAAEGDDLGGNADDLRRTLPRRGRPPKRRSPSTSSAR--SRGRPRGR 247


>tr|Q00TM1|Q00TM1_OSTTA Myosin class II heavy chain (ISS)
            OS=Ostreococcus tauri GN=Ot17g00680 PE=4 SV=1
          Length = 1367

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 4/180 (2%)
 Frame = -3

Query: 599  LNMANVCVESYKEPVEFKENELAKL---IAKT*VDLETL*TRNQ*QEQQVTKATSTL*ES 429
            L+ AN  + S +E VE  ENEL        +  VD +               A STL ++
Sbjct: 883  LSAANQTIASLRERVEEVENELVSAQDAFKRASVDRDV--------------ANSTLAQA 928

Query: 428  TSRIDILQIHLNIENTQLV*SEPRCQEQIHC*TSSRTTVATLQGTDKAYKAVEQKVKDLA 249
               +D  ++ L +   + +  E +C+E              L+ T  A+K  + +++ + 
Sbjct: 929  REALDAREVELKLAEKEGIDKENQCRE----------VTEALRSTQLAHKETQSELEKME 978

Query: 248  MELKLEQMQRRELSIRFM**EERYQ*EIDHLKSEM-RKAQATTTAQETILEEG*INCEMQ 72
             EL           I      E  +  I+ LKSE+ RK++A   AQ  + E+  I+ E++
Sbjct: 979  AEL-----------INLAEVVEHGEDSIEKLKSEIERKSKALEQAQALMDEKTKISVELE 1027


>tr|A2ERU1|A2ERU1_TRIVA Putative uncharacterized protein
            OS=Trichomonas vaginalis G3 GN=TVAG_472950 PE=4 SV=1
          Length = 966

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
 Frame = -3

Query: 596  NMANVCVESYKEPVEFKENELAKLIAKT*VDLETL*TRNQ*QEQQVTKATSTL*ESTSRI 417
            N A   + S K+ +  K NE  K I +   +LET   RNQ    ++ + T  + E     
Sbjct: 720  NTAVNTINSEKQAILKKLNEKEKAIERLTDELETQAKRNQQFSDEIERLTDKIDEQKICF 779

Query: 416  DILQIHLNIENTQLV*S-EPRCQEQIHC*TSS----RTTVATLQGTDKAYKAVEQKVKDL 252
            D     L+ E  QL+   E +  + +    +     + T  TL+  ++  + + QKVK+L
Sbjct: 780  DE---KLSKEKEQLINDYEAKINDYMKKSKTDAELVKKTTETLKNNEQKQQILLQKVKEL 836

Query: 251  AMELKLEQMQRR 216
              +L L + QR+
Sbjct: 837  ERQLALSESQRK 848


>tr|A0CY19|A0CY19_PARTE Chromosome undetermined scaffold_30, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00011318001 PE=4 SV=1
          Length = 416

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 24/171 (14%)
 Frame = -3

Query: 578 VESYKEPVEFKENELAKLIAKT*VDLETL*TRNQ*QEQQVTKATSTL*ESTSRIDILQIH 399
           +E  KE +  +ENE+         DL+T  T+ +     V K  +   E  ++++ILQ  
Sbjct: 108 LEKLKEIINLRENEID--------DLKTRNTQLEILSIDVRKLDTYNHELQNQLEILQSQ 159

Query: 398 LNIENTQLV*SEPRCQEQIHC*TSSRTTVATLQGTDK-AYKAVEQ-------KVKDLAME 243
           ++I  T+++      +            +   +  DK +Y   EQ       KVKDL+ E
Sbjct: 160 ISIYETKIIEQRNEIENLNSINKHLNNQLQEKKNHDKLSYTIYEQDMLNQINKVKDLSKE 219

Query: 242 ----------------LKLEQMQRRELSIRFM**EERYQ*EIDHLKSEMRK 138
                           LK +Q+Q++ LSIR     E Y+ E++  K++  K
Sbjct: 220 KDNQIKSQNIQFSQLQLKYDQLQQQMLSIR-----ENYEQELNQAKAKQGK 265


>tr|Q2GRG9|Q2GRG9_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_09435 PE=4 SV=1
          Length = 347

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
 Frame = +2

Query: 233 LTLAPLQGL*LFVPLLCMPYLCLVVWLRLSLSWFSNVFALGTWVLI-IPIEYFQCLDGFG 409
           L +  +  L L++ +L   Y+  V W  L      NV+    ++ I IP+E     D  G
Sbjct: 78  LCITKVSILLLYLRVLTHDYIRKVSWGALGFVVLYNVWGFAMYLTICIPLEKMWNADLQG 137

Query: 410 VCQFLK*IPIELKWPL*LVALVTDFLSREFPDPLM 514
            C      P E+ W L  + ++TDF+    P P++
Sbjct: 138 YCH-----PFEVWWALTYLHIITDFMIFLIPIPVV 167


>tr|Q4N897|Q4N897_THEPA Putative uncharacterized protein
           OS=Theileria parva GN=TP01_0575 PE=4 SV=1
          Length = 1723

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
 Frame = -3

Query: 575 ESYK-EPVEFKENELAKLIAKT*VDLETL*TRNQ*QEQQVTKATSTL*ESTSRIDILQIH 399
           ES K + ++ + ++ AK +     D++     N    +Q+ +    L   T   + L+  
Sbjct: 475 ESQKIDQLKVENSKEAKRLQDLQADIDKEKLANTKLSEQLNRERDELATKTQEQERLKSE 534

Query: 398 LNIENTQLV*SEPRCQEQIHC*TSSRTTVATLQGTDKAYKAVEQKVKDLAMELKLEQMQR 219
              +NTQ++ +E   Q+QI   + + T  ATL+  +K  +A  +K+K      ++E++ +
Sbjct: 535 YESKNTQILETEKNLQKQI---SENETLAATLKKQEKDIEAENEKIKK-----EIERLNQ 586

Query: 218 RELSIRFM**EERYQ*EIDHLKSEMRKAQATTTAQETILEEG*INCE 78
            E +  ++    +Y       K + RK+ A    Q+ + ++  +N E
Sbjct: 587 EERNQAYI---LKYT-----AKQQSRKSSALLNKQKNLEDQIRLNTE 625