BP912390
Clone id YMU001_000018_E05
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AACAAAACATCAAAAGATTATGAAAACAAGTCTACACAGATGGGATCACCACAAACATTT
CAAGGGAGATGCCTTGTTTACAACCGTGTACATCGCAAGCCCCATGGCTCAACTGGCTCA
GCTCAAAATCAAATAATTGTAAGCTTTTGCAACAATAAATGATGACTGCATGATATAACA
CATAATTGTGCTTTAGCTCTGTGCGGGCCCTACAATAGAGATGGAGGATACTTTCACATC
CCACATCAAACATTTAAAAAGTCCTCTCCAAGACATTACCATACACGTTTCTTTCAAGAA
ATCATGCTCTTTTTCTACATTACTATGTGTCTCCACTGCGGATGGAACTTCATGAAAGTT
CTTGGCCCCAACCTTGGCGTCTGCTTAGGACTTTTGGAGTGCAAGAAACGACAGCATCAC
AAAGCCATGTCGCAATACCATGGTAATGTTGAAAGAATAAAATACTAGAACTATTATTTG
GATCACGTGAAGCAAAGAATTAGATAGGAAACCGAAAGCTATACAGATCTCGTATCTTTT
CTCTCATACCTTTTGACGAGTACC
■■Homology search results ■■ -
sp_hit_id O92532
Definition sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus genotype 6h (isolate VN004)
Align length 105
Score (bit) 31.2
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912390|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E05.
(564 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus gen... 31 3.7

>sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus
genotype 6h (isolate VN004) PE=3 SV=3
Length = 3015

Score = 31.2 bits (69), Expect = 3.7
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Frame = -1

Query: 507 LSNSLLHVIQIIVLVFYSFNITMV-----LRHGFVMLSFLALQKS*ADAKVGAKNF--HE 349
LS L+H+ Q IV + Y + ++ ++ +V+L+FL L ADA+V A +
Sbjct: 686 LSTGLIHLHQNIVDIQYLYGVSTAVVSWAMKWEYVVLAFLVL----ADARVCACLWLMFL 741

Query: 348 VPSAVETHSNVEKEHDFLKETCMVMSWRGLFKCLMWDVKVSSISI 214
V A NV + +C + W +F C W V+ ++ +
Sbjct: 742 VGQAEAALENVIVLNAASAASCQGLLWGLIFICCAWHVRGRAVPV 786


tr_hit_id B6NZR0
Definition tr|B6NZR0|B6NZR0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 49
Score (bit) 34.7
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912390|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E05.
(564 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6NZR0|B6NZR0_BRAFL Putative uncharacterized protein OS=Branc... 35 3.7
tr|Q7PQ84|Q7PQ84_ANOGA AGAP004535-PA OS=Anopheles gambiae GN=AGA... 33 8.2
tr|A9VDN7|A9VDN7_MONBE Predicted protein OS=Monosiga brevicollis... 33 8.3

>tr|B6NZR0|B6NZR0_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_101052 PE=4 SV=1
Length = 1090

Score = 34.7 bits (78), Expect = 3.7
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1

Query: 394 LECKKRQHHKAMSQYHGNVERIKY*NYYLDHVKQRIR*ETESYTDLVSF 540
LE ++RQ + S Y N++R + LDH+++RIR +TE D+ S+
Sbjct: 692 LEEERRQRQEEKSAYDANIQRW---SQKLDHLRERIRCQTEHVEDMKSY 737


>tr|Q7PQ84|Q7PQ84_ANOGA AGAP004535-PA OS=Anopheles gambiae
GN=AGAP004535 PE=4 SV=4
Length = 1021

Score = 33.5 bits (75), Expect = 8.2
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = -3

Query: 484 DPNNSSSILFFQHYHGIATWLCDAVVSCTPKVLSRRQGWGQELS*SSIRSGDT**CRKRA 305
D + S LFF YH + T L +SC ++ S R+ SI S +R
Sbjct: 185 DSESDSLKLFFDLYHMLPTRLSSLALSCLAQITSIRR---------SIFSNS-----ERI 230

Query: 304 *FLERNVYG--NVLERTF*MFDVGCESILHLYCRARTELKHNYVLYHAVII 158
FL + V G ++L+ + + D H +CR LK NY L VI+
Sbjct: 231 KFLTKLVKGATDILKTSHGLSD---PDNYHEFCRLLARLKSNYQLSELVIV 278


>tr|A9VDN7|A9VDN7_MONBE Predicted protein OS=Monosiga brevicollis
GN=34736 PE=3 SV=1
Length = 786

Score = 33.5 bits (75), Expect = 8.3
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -1

Query: 486 VIQIIVLVFYSFNITMVLRHGFVMLSFLALQKS*ADAKVGAKNFHEVPSAVETHSNVEKE 307
++ ++ ++F S N T+ L H M ++ A+ + + N H PS + H K
Sbjct: 13 LLPVVNVIFQSSNNTVNLNHKRYMEAYAAVYNFCTTNRPPSSNSHRDPSHIVGHDMYRKV 72

Query: 306 HDFLKETCM 280
D+L++ C+
Sbjct: 73 ADYLEQRCI 81