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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912392
Clone id YMU001_000018_E07
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTCCACAACACAAACCTGTTAGTATGAAGTCCAAATATGTTTACATCCAATGAGAAA
CATGCTAGCACTCTGTTGCTTGTAGATTAGCAAAGGCGAGCACGATATGATAGCACACTA
ATGTGTATTTACAAATCAACTACACCAAGATCCTAGTAGCTTTACTGTAAAAATTGCATT
GTCAGACACAATGCCAAAGACTATGGTTAATTTCTACATGCGCCTTTAGTGAAGGCATCA
AAGCTTTTTATCTCTGAGTAGAAAGATATTAATGCATCAATGGGGACATAACCATGGGAT
GATCTTTCGGTTTCTCCACTGTCTTGAATGCGGTTCTCTTCACTCGATCCGCCCTTCTCT
GTTTGCATATGATGCTGCCATTCCTTTCATCCTCCTTCCCCTTACTTCCACATAATGAAA
AGACGGGTTCCTCATGCACACATCTTGTAGCTCCTTGTAGCTTTGCTCCTTCATATCCTT
AGCAGGAAAATGCTCAACTCCGGCCCTCCCGTGCCATCAGGATTCATC
■■Homology search results ■■ -
sp_hit_id Q07896
Definition sp|Q07896|NOC3_YEAST Nucleolar complex-associated protein 3 OS=Saccharomyces cerevisiae
Align length 71
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912392|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E07.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07896|NOC3_YEAST Nucleolar complex-associated protein 3 OS=S...    32   1.9  

>sp|Q07896|NOC3_YEAST Nucleolar complex-associated protein 3
           OS=Saccharomyces cerevisiae GN=NOC3 PE=1 SV=1
          Length = 663

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
 Frame = -3

Query: 472 EGAKLQGATRCVHEEPVFSLCGSKGKEDERNGSIICKQRRAD--------------RVKR 335
           EG   Q A   + E  ++S  GS   E+E++  ++ ++ R+D              +V+R
Sbjct: 27  EGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEMVPRKNRSDTSNLVEGLPIKVNGKVER 86

Query: 334 TAFKTVEKPKD 302
              K  EKPKD
Sbjct: 87  KLHKAQEKPKD 97
tr_hit_id A7PWH8
Definition tr|A7PWH8|A7PWH8_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera
Align length 18
Score (bit) 40.8
E-value 0.042
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912392|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E07.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PWH8|A7PWH8_VITVI Chromosome chr8 scaffold_34, whole genome...    41   0.042
tr|Q6ZFZ3|Q6ZFZ3_ORYSJ Putative uncharacterized protein OJ1311_H...    38   0.36 
tr|Q0DY83|Q0DY83_ORYSJ Os02g0709600 protein OS=Oryza sativa subs...    38   0.36 
tr|B6TX93|B6TX93_MAIZE Plant-specific domain TIGR01570 family pr...    38   0.36 
tr|A3AAL4|A3AAL4_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.36 
tr|A7P313|A7P313_VITVI Chromosome chr1 scaffold_5, whole genome ...    37   0.61 
tr|A5BQF1|A5BQF1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.61 
tr|Q8LB38|Q8LB38_ARATH Putative uncharacterized protein OS=Arabi...    36   1.4  
tr|O22227|O22227_ARATH Expressed protein (Putative uncharacteriz...    36   1.4  
tr|A7NTQ3|A7NTQ3_VITVI Chromosome chr18 scaffold_1, whole genome...    34   4.0  
tr|A9RPC1|A9RPC1_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   5.2  
tr|Q9FL47|Q9FL47_ARATH Gb|AAD20416.1 (Expressed protein) OS=Arab...    33   6.7  
tr|Q9FN45|Q9FN45_ARATH Genomic DNA, chromosome 5, P1 clone:MYJ24...    33   8.8  
tr|Q5VR64|Q5VR64_ORYSJ Putative uncharacterized protein P0702B09...    33   8.8  
tr|A2ZYT3|A2ZYT3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.8  
tr|A2WW52|A2WW52_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.8  

>tr|A7PWH8|A7PWH8_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025617001
           PE=4 SV=1
          Length = 262

 Score = 40.8 bits (94), Expect = 0.042
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPDGTGGPELSIFLLRI
Sbjct: 245 MNPDGTGGPELSIFLLRI 262


>tr|Q6ZFZ3|Q6ZFZ3_ORYSJ Putative uncharacterized protein
           OJ1311_H06.6-2 OS=Oryza sativa subsp. japonica
           GN=OJ1311_H06.6-2 PE=4 SV=1
          Length = 290

 Score = 37.7 bits (86), Expect = 0.36
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPDG+GGPELSI+LLR+
Sbjct: 273 MNPDGSGGPELSIYLLRV 290


>tr|Q0DY83|Q0DY83_ORYSJ Os02g0709600 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0709600 PE=4 SV=1
          Length = 247

 Score = 37.7 bits (86), Expect = 0.36
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPDG+GGPELSI+LLR+
Sbjct: 230 MNPDGSGGPELSIYLLRV 247


>tr|B6TX93|B6TX93_MAIZE Plant-specific domain TIGR01570 family
           protein OS=Zea mays PE=2 SV=1
          Length = 281

 Score = 37.7 bits (86), Expect = 0.36
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPDG+GGPELSI+LLR+
Sbjct: 264 MNPDGSGGPELSIYLLRV 281


>tr|A3AAL4|A3AAL4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007836 PE=4 SV=1
          Length = 291

 Score = 37.7 bits (86), Expect = 0.36
 Identities = 15/18 (83%), Positives = 18/18 (100%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPDG+GGPELSI+LLR+
Sbjct: 274 MNPDGSGGPELSIYLLRV 291


>tr|A7P313|A7P313_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030265001
           PE=4 SV=1
          Length = 262

 Score = 37.0 bits (84), Expect = 0.61
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPD TGGPELSI+LLR+
Sbjct: 245 MNPDSTGGPELSIYLLRV 262


>tr|A5BQF1|A5BQF1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038922 PE=4 SV=1
          Length = 248

 Score = 37.0 bits (84), Expect = 0.61
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPD TGGPELSI+LLR+
Sbjct: 231 MNPDSTGGPELSIYLLRV 248


>tr|Q8LB38|Q8LB38_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 297

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPD  GGPELSIFLLRI
Sbjct: 280 MNPDKNGGPELSIFLLRI 297


>tr|O22227|O22227_ARATH Expressed protein (Putative uncharacterized
           protein At2g41660) (At2g41660) (Putative uncharacterized
           protein T32G6.18/At2g41660) OS=Arabidopsis thaliana
           GN=T32G6.18/At2g41660 PE=2 SV=1
          Length = 297

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           MNPD  GGPELSIFLLRI
Sbjct: 280 MNPDKNGGPELSIFLLRI 297


>tr|A7NTQ3|A7NTQ3_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014755001
           PE=4 SV=1
          Length = 228

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -2

Query: 527 MNPDGTGGPELSIFLLRI 474
           +NPDG GGPELSIF +R+
Sbjct: 210 INPDGAGGPELSIFFVRV 227