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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912393
Clone id YMU001_000018_E08
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACTGGCTTAAAGTAAAAATTGCCGTGCATTCGCATGGGTACCCTCAGAGATTCGACTC
CTTGTCTGACGTGGTCTCTGTTTACGAGTTCAAGCATGGCAGACGACAGCTTCAAGAAGT
AGCAATGGGTGGCAGGCCCAGCGATGGCGTCTCCTTTGTCTCACGACCTTTTGGGACTAT
GTTTGGATGCACTCGGGGCCTCTTCGGACCTGCTGGTTTCAGTGACATGCGTGCTTTACT
CCTTATGCGGTTGCATGCTTCTTCTTCACGTGAATCTGAAAGCAGGGGAGTGATAGTACA
AGAATTGACTGAGGACTTTGAAATTAGTTCTAATGGAGCTTCAAATCATCATCAGCATAT
TGTTGAGCTCCCTGATGATAGTGTGAGCTTGACTCATAAGCAAACGATCAAGTTTGGCAA
GAAAGCGTATACCAAATTTCTAGGGATGGAATGCTACCATCAGAGAAGACTGACGGAAGG
CTTCAAAATCGAAGCTTCCATAAGTGCAATTTACATCAGAATGGATTGGACAACCTACAC
TACTCTCTCGCAGCA
■■Homology search results ■■ -
sp_hit_id Q03297
Definition sp|Q03297|PER_DROWI Period circadian protein (Fragment) OS=Drosophila willistoni
Align length 104
Score (bit) 31.2
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912393|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E08.
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03297|PER_DROWI Period circadian protein (Fragment) OS=Droso...    31   3.6  
sp|O13719|YDZC_SCHPO SWIRM domain-containing protein C14C4.12c O...    31   4.6  
sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase...    31   4.7  
sp|Q8IXS0|CF146_HUMAN Uncharacterized protein C6orf146 OS=Homo s...    31   4.7  
sp|Q6P3V7|GNN_RAT Tetratricopeptide repeat protein GNN OS=Rattus...    30   6.1  

>sp|Q03297|PER_DROWI Period circadian protein (Fragment) OS=Drosophila
            willistoni GN=per PE=3 SV=2
          Length = 1093

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
 Frame = -1

Query: 336  PLELISKSSVNSCTITPLLSDSREEEACNRIRSKARMSLKPAGPKRP---------RVHP 184
            P++L  ++S N  T  P++       A N+ +  A  S+ PA P+RP             
Sbjct: 931  PMQLPEQASKNVYTTQPVMV--APPTATNKTQG-AFHSITPAPPQRPSSQATSVKAETGS 987

Query: 183  NIVPKGRETKETPSLGLPPIATS*SCRLPCLNS*TETTSDKESN 52
            N+ P     KE P   + P     +   PC N+ T      +SN
Sbjct: 988  NVAPSDTSKKEVPDSPITPTMGDFTLDQPCNNNATTLKKYTDSN 1031


>sp|O13719|YDZC_SCHPO SWIRM domain-containing protein C14C4.12c
           OS=Schizosaccharomyces pombe GN=SPAC14C4.12c PE=2 SV=1
          Length = 297

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = -3

Query: 307 QFLYYHSPAFRFT*RRSMQPHKE*ST----HVTETSR--SEEAPSASKHSPKRS*DKGDA 146
           Q+L  HSPA+RF+   + +P ++ S+    H + T +  S + P +   +P     KGD 
Sbjct: 97  QWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTPH---SKGDV 153

Query: 145 IAGPATHCYFLKLSS 101
             G   H    K SS
Sbjct: 154 HPGMPQHNTRFKQSS 168


>sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase FAB1
            OS=Saccharomyces cerevisiae GN=FAB1 PE=1 SV=1
          Length = 2278

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
 Frame = -1

Query: 342  EAPLELISKSSVNSCTITPLLSDSREEEACNRIRSKARMSLKPAGPKRPRVHPNIVPKGR 163
            EAP+     S  N+C   P L  + E E  N I       L P+G      H N  P  +
Sbjct: 1726 EAPVG--EHSRANNCN-PPNLDQNLETELENSISQWGENILNPSGKTTASTHLNSKPVVK 1782

Query: 162  ETKETP-----------SLGLPPIATS 115
            ET E P           S  LPP+ T+
Sbjct: 1783 ETSENPKSIVRESDNSKSEPLPPVITT 1809


>sp|Q8IXS0|CF146_HUMAN Uncharacterized protein C6orf146 OS=Homo
           sapiens GN=C6orf146 PE=2 SV=2
          Length = 508

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = -1

Query: 324 ISKSSVNSCTITPLLSDSREEEACNRIRSKARMSLKPAGPKRPRVH-----PNIVPKGRE 160
           +SKS     T+ P  +++  E    R+    R+       +RPR+      P +  +   
Sbjct: 266 LSKSDNWKVTVDP--AETSVEHLITRLLELERLQHMTIQKERPRLQTTFCTPAVTERPSS 323

Query: 159 TKETPSLGLPPIATS*SCRLPCLNS*TETTSDKESN 52
           +K TP +  P +  S S ++PC++   E + +   +
Sbjct: 324 SKATPKVRQPKLCDSLSLQIPCVDKSQEKSKNNSGS 359


>sp|Q6P3V7|GNN_RAT Tetratricopeptide repeat protein GNN OS=Rattus
            norvegicus GN=Gnn PE=2 SV=2
          Length = 1309

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -1

Query: 297  TITPLLSDSREEEACNRIRSKARMSLKPAGPKRPRVHP 184
            T+TP+LS S EE+A N   S+ R SL+   P++  V+P
Sbjct: 1178 TLTPILSMSAEEKAQN---SQIRNSLRKQPPRKKGVYP 1212
tr_hit_id Q0RYX5
Definition tr|Q0RYX5|Q0RYX5_RHOSR Glycine dehydrogenase (Decarboxylating) subunit 1 OS=Rhodococcus sp. (strain RHA1)
Align length 92
Score (bit) 36.6
E-value 0.92
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912393|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_E08.
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0RYX5|Q0RYX5_RHOSR Glycine dehydrogenase (Decarboxylating) s...    37   0.92 
tr|A9SWK4|A9SWK4_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.92 
tr|B6H037|B6H037_PENCH Pc12g02590 protein OS=Penicillium chrysog...    35   2.0  
tr|A6RIY7|A6RIY7_BOTFB Putative uncharacterized protein OS=Botry...    35   2.7  
tr|Q5Z9V4|Q5Z9V4_ORYSJ Os06g0267400 protein OS=Oryza sativa subs...    34   4.6  
tr|A2YBI7|A2YBI7_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.6  
tr|A7P0R9|A7P0R9_VITVI Chromosome chr19 scaffold_4, whole genome...    34   6.0  
tr|A5C5B2|A5C5B2_VITVI Putative uncharacterized protein OS=Vitis...    34   6.0  
tr|B4MAJ1|B4MAJ1_DROVI GJ15923 OS=Drosophila virilis GN=GJ15923 ...    33   7.8  

>tr|Q0RYX5|Q0RYX5_RHOSR Glycine dehydrogenase (Decarboxylating)
           subunit 1 OS=Rhodococcus sp. (strain RHA1) GN=gcvPa PE=4
           SV=1
          Length = 469

 Score = 36.6 bits (83), Expect = 0.92
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +2

Query: 29  HSHGYPQRFDSLSDVVSVYEFKHGRRQLQEVAMGGRP--SDGVSFVSRPFGTMFGCTRGL 202
           ++H YP  F S+++ +   E+  G    ++ + G R   +D        +         L
Sbjct: 300 YAHQYPTLFISIAETIKPGEYGFGLGLFEQSSYGLRDKGNDWTGHSVYMWAIAATTYMAL 359

Query: 203 FGPAGFSDMRALLLMRLHASSSRESESRGVIV 298
            GP GF D+  L+L R H ++   SE  GV V
Sbjct: 360 MGPQGFEDVGGLILQRAHYAAQLLSEIDGVRV 391


>tr|A9SWK4|A9SWK4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_136475 PE=4 SV=1
          Length = 265

 Score = 36.6 bits (83), Expect = 0.92
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
 Frame = +2

Query: 158 VSRPFGTMF--GCTRGLFGPAGFSDMRA--LLLMRLHASSSRESESRGVIVQELTEDFEI 325
           V R  GT+   G T  + G AGFS++      L  L  S +RE + +G+    +  D +I
Sbjct: 153 VEREKGTLLFTGATASIRGGAGFSEIACGKFALRALAQSLAREYQPQGIHAAHIIVDGKI 212

Query: 326 SSNGASNHHQHIVELPD-----DSVSLTHKQTIKFGKKAYTKFLGMECYHQR 466
           SS    + +    ++PD     D+++  + Q  K  K A+T+ L +  + ++
Sbjct: 213 SSPRTLSMNDRNQDMPDATMNPDAIAEVYWQVHKQHKSAWTQELDLRPFSEK 264


>tr|B6H037|B6H037_PENCH Pc12g02590 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc12g02590 PE=4 SV=1
          Length = 792

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 28/85 (32%), Positives = 39/85 (45%)
 Frame = +2

Query: 23  AVHSHGYPQRFDSLSDVVSVYEFKHGRRQLQEVAMGGRPSDGVSFVSRPFGTMFGCTRGL 202
           AV S G P  + +L   VS+     GR   Q+ AMGG PS G  F    FG+        
Sbjct: 121 AVTSAGSPPDYGNLDSGVSLLPGHRGR--FQQSAMGGTPSAGPGFA---FGS-------- 167

Query: 203 FGPAGFSDMRALLLMRLHASSSRES 277
             P+G  DM  ++   LH +  R++
Sbjct: 168 -NPSGDVDMETIVRDLLHRTGGRQN 191


>tr|A6RIY7|A6RIY7_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_00408
           PE=4 SV=1
          Length = 1493

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = -1

Query: 288 PLLSDSREEEACNRIRSKARMSLKPAGPKRPRVHP------NIVPKGRETKETPSLGLPP 127
           PL+ + R EE  N ++S+  +  +    +RP   P      N+V KG  T E P L LPP
Sbjct: 696 PLVINKRSEETLNTLKSEETLVNESVQGRRPSDSPTSTHSGNVVYKGLVTDEYPDLLLPP 755

Query: 126 IA 121
            A
Sbjct: 756 NA 757


>tr|Q5Z9V4|Q5Z9V4_ORYSJ Os06g0267400 protein OS=Oryza sativa subsp.
           japonica GN=P0528B02.21 PE=3 SV=1
          Length = 544

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +2

Query: 173 GTMFGCTRGLFGPAGFSDMRALLLMRLHASSSRESESRGVIVQELTEDFEISSNGASNHH 352
           GT++GC    F P G    R   +  +H  S+R  +S   + +E    F      AS   
Sbjct: 118 GTLYGCRDVAFSPYGERWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGG 177

Query: 353 QHIVELPDDSVSLTHKQTIK--FGKK 424
             +V L +  V LTH    +  FGKK
Sbjct: 178 GGVVNLTELIVGLTHAVVSRAAFGKK 203


>tr|A2YBI7|A2YBI7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22468 PE=3 SV=1
          Length = 565

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +2

Query: 173 GTMFGCTRGLFGPAGFSDMRALLLMRLHASSSRESESRGVIVQELTEDFEISSNGASNHH 352
           GT++GC    F P G    R   +  +H  S+R  +S   + +E    F      AS   
Sbjct: 118 GTLYGCRDVAFSPYGERWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGG 177

Query: 353 QHIVELPDDSVSLTHKQTIK--FGKK 424
             +V L +  V LTH    +  FGKK
Sbjct: 178 GGVVNLTELIVGLTHAVVSRAAFGKK 203


>tr|A7P0R9|A7P0R9_VITVI Chromosome chr19 scaffold_4, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00027338001
            PE=4 SV=1
          Length = 2599

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
 Frame = +2

Query: 347  HHQHIVELPDD---------SVSLTHKQTIKFGKKAYTKFLGMECYHQRRLTEGF 484
            H  ++VE P D         ++S     ++KFGK+ YT F G+   + R L +GF
Sbjct: 1453 HKDNVVETPSDEGFMMLLPAALSYLKSTSLKFGKQYYTCFKGIPSLYSRILLDGF 1507


>tr|A5C5B2|A5C5B2_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_039906 PE=4 SV=1
          Length = 2715

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
 Frame = +2

Query: 347  HHQHIVELPDD---------SVSLTHKQTIKFGKKAYTKFLGMECYHQRRLTEGF 484
            H  ++VE P D         ++S     ++KFGK+ YT F G+   + R L +GF
Sbjct: 1475 HKDNVVETPSDEGFMMLLPAALSYLKSTSLKFGKQYYTCFKGIPSLYSRILLDGF 1529


>tr|B4MAJ1|B4MAJ1_DROVI GJ15923 OS=Drosophila virilis GN=GJ15923
           PE=4 SV=1
          Length = 3452

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 293 IVQELTEDFEISSNGASNHHQHIVELPDDSVSLTHKQ 403
           I+QELT+      NGA +HH H V+LPDD+     +Q
Sbjct: 464 ILQELTKKVIDEENGA-HHHHHPVDLPDDAAHQQQQQ 499