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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912402
Clone id YMU001_000018_F05
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTAGTTTGCCGCTCTTAATTTGTGAAGGCTTTGTTTATACGTAATGCTTATAAAGGGCT
CGATAGCTGTACACTGGTCTTTGTATAGATTTTGTGCCTTTTATGAATCACGCTTGTGTC
ATTGAATGAGACGTTCTCATGTGAATATATAATCTCTGAATTTTAAGGATTGTAGATGGT
TATAGAAACCTTGATTCTTCAGCAATGAATTAATTGTGTATTTCAAACTTACGTTTTCTT
CCTTTTTATGGGCATACAAAATACAGTTAGGTGGTTTTGTCTGTACAAAGATAAACTTAC
GTTTTCTTCCTTTTCATGGGCATACAAAATACAGTTAGGTGGTTCTGTCTGTACAAAGAT
AAAGAAATCAGTGTTCAAATGCAAACAGGCCAGCTCTTGAAACTGTGATTTGCAGGTGAA
GCAAATTTCTTGGGAGGTGTGGCCAAGGTTCATGGAGTGAAAGATTTAGATGTTTCTACT
GCAAAATCCCGGTTTTTCCAGATATATTTGGAAAAGGTTTAGTTGACAGCCCCGCCAGGA
GTAC
■■Homology search results ■■ -
sp_hit_id P21231
Definition sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus (strain N)
Align length 38
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912402|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_F05.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus ...    31   3.4  
sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus ...    31   3.4  
sp|A2SEL8|UPPP_METPP Undecaprenyl-diphosphatase OS=Methylibium p...    31   4.4  
sp|Q9C0F0|ASXL3_HUMAN Putative Polycomb group protein ASXL3 OS=H...    30   9.9  

>sp|P21231|POLG_SBMVN Genome polyprotein OS=Soybean mosaic virus
           (strain N) PE=1 SV=2
          Length = 3066

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 341 GSVCTKIKKSVFKCKQASS*NCDLQVKQISWEVWPRFM 454
           G +   I +S+F  K+ S   C   +K +SWE + +F+
Sbjct: 346 GELAAAISQSIFPVKKLSCKQCRQHIKHLSWEEYKQFL 383


>sp|Q90069|POLG_SBMVG Genome polyprotein OS=Soybean mosaic virus
           (strain G2) PE=3 SV=1
          Length = 3066

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 341 GSVCTKIKKSVFKCKQASS*NCDLQVKQISWEVWPRFM 454
           G +   I +S+F  K+ S   C   +K +SWE + +F+
Sbjct: 346 GELAAAISQSIFPVKKLSCKQCRQHIKHLSWEEYKQFL 383


>sp|A2SEL8|UPPP_METPP Undecaprenyl-diphosphatase OS=Methylibium
           petroleiphilum (strain PM1) GN=uppP PE=3 SV=1
          Length = 285

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 218 VFQTYVFFLFMGIQNTVRWFCLYKDKLTFSSFSWAYKIQLGGSV 349
           VF   V F F+     +RW   Y     F+ F+W Y+I  GG V
Sbjct: 230 VFAVGVVFAFLSALVCIRWLIRYVSTHDFTVFAW-YRIAFGGLV 272


>sp|Q9C0F0|ASXL3_HUMAN Putative Polycomb group protein ASXL3 OS=Homo
            sapiens GN=ASXL3 PE=2 SV=3
          Length = 2248

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +2

Query: 347  VCTKIKKSVFKCKQASS*NCDLQVKQISWEVWPRFME*KI*MFLLQNPGFSRYI 508
            +C+ IK      ++  S +C+L +KQ+S++     M+ ++  F L++  FS Y+
Sbjct: 2075 ICSNIKSEPLSFEEGLSSSCELGMKQVSYD--QNEMKEQLKAFALKSADFSSYL 2126
tr_hit_id A9SEV6
Definition tr|A9SEV6|A9SEV6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 41
Score (bit) 57.8
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912402|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_F05.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEV6|A9SEV6_PHYPA Predicted protein OS=Physcomitrella paten...    58   4e-07
tr|A7PRQ1|A7PRQ1_VITVI Chromosome chr14 scaffold_27, whole genom...    57   6e-07
tr|A5BN38|A5BN38_VITVI Putative uncharacterized protein OS=Vitis...    57   6e-07
tr|B8LNZ5|B8LNZ5_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|Q10ME8|Q10ME8_ORYSJ HAD-superfamily hydrolase, subfamily IA, ...    54   4e-06
tr|Q10ME7|Q10ME7_ORYSJ HAD-superfamily hydrolase, subfamily IA, ...    54   4e-06
tr|B8AI99|B8AI99_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A3AHA2|A3AHA2_ORYSJ Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|B8A310|B8A310_MAIZE Putative uncharacterized protein OS=Zea m...    54   7e-06
tr|A9PES3|A9PES3_POPTR Putative uncharacterized protein OS=Popul...    54   7e-06
tr|A9SJI4|A9SJI4_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   6e-05
tr|Q9C7X1|Q9C7X1_ARATH Putative uncharacterized protein F13N6.21...    48   4e-04
tr|Q8VZ10|Q8VZ10_ARATH Putative uncharacterized protein At1g5650...    48   4e-04
tr|Q8L9X3|Q8L9X3_ARATH Putative uncharacterized protein OS=Arabi...    48   4e-04
tr|Q0WQ65|Q0WQ65_ARATH Putative uncharacterized protein At1g5650...    48   4e-04
tr|B4YQS9|B4YQS9_9POTV Polyprotein OS=Watermelon mosaic virus PE...    35   3.4  
tr|A0CFZ6|A0CFZ6_PARTE Chromosome undetermined scaffold_178, who...    33   9.7  
tr|Q9PYH2|Q9PYH2_9POTV Helper component protease (Fragment) OS=S...    33   9.9  
tr|Q9PYF7|Q9PYF7_9POTV Helper component protease (Fragment) OS=S...    33   9.9  
tr|Q80JP8|Q80JP8_9POTV Helper component protease (Fragment) OS=S...    33   9.9  
tr|B4YQS8|B4YQS8_9POTV Polyprotein OS=Watermelon mosaic virus PE...    33   9.9  

>tr|A9SEV6|A9SEV6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_128572 PE=4 SV=1
          Length = 1040

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 29/41 (70%), Positives = 32/41 (78%)
 Frame = +1

Query: 415 GEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEKV*LTAPP 537
           GEANFLGGVAK +GVKD D  +AK RFFQIY+EK    APP
Sbjct: 96  GEANFLGGVAKKYGVKDFDTVSAKRRFFQIYIEKF---APP 133


>tr|A7PRQ1|A7PRQ1_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022589001
           PE=4 SV=1
          Length = 1054

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 29/51 (56%), Positives = 33/51 (64%)
 Frame = +1

Query: 364 EISVQMQTGQLLKL*FAGEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           E+ VQ+ T   +     GEANFLGGVA V GVK  D   AK RFF+IYLEK
Sbjct: 98  EMGVQVTTEDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLEK 148


>tr|A5BN38|A5BN38_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030553 PE=4 SV=1
          Length = 659

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 29/51 (56%), Positives = 33/51 (64%)
 Frame = +1

Query: 364 EISVQMQTGQLLKL*FAGEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           E+ VQ+ T   +     GEANFLGGVA V GVK  D   AK RFF+IYLEK
Sbjct: 98  EMGVQVTTEDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLEK 148


>tr|B8LNZ5|B8LNZ5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 223

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +1

Query: 364 EISVQMQTGQLLKL*FAGEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           E+ +++ T   +     GEANFLGGVA+V  VKD D   AK RFF+IYL+K
Sbjct: 104 EMGIEVTTEDFIPFMGTGEANFLGGVARVKSVKDFDPVAAKKRFFEIYLKK 154


>tr|Q10ME8|Q10ME8_ORYSJ HAD-superfamily hydrolase, subfamily IA,
           variant 3 containing protein, expressed OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g19760 PE=4 SV=1
          Length = 1064

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +1

Query: 415 GEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           GEANFLGGVAK+ GVKD +  +AK RFF+IYL+K
Sbjct: 125 GEANFLGGVAKLKGVKDFNAESAKKRFFEIYLDK 158


>tr|Q10ME7|Q10ME7_ORYSJ HAD-superfamily hydrolase, subfamily IA,
           variant 3 containing protein, expressed OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g19760 PE=4 SV=1
          Length = 772

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +1

Query: 415 GEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           GEANFLGGVAK+ GVKD +  +AK RFF+IYL+K
Sbjct: 125 GEANFLGGVAKLKGVKDFNAESAKKRFFEIYLDK 158


>tr|B8AI99|B8AI99_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07299 PE=4 SV=1
          Length = 1103

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +1

Query: 415 GEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           GEANFLGGVAK+ GVKD +  +AK RFF+IYL+K
Sbjct: 125 GEANFLGGVAKLKGVKDFNAESAKKRFFEIYLDK 158


>tr|A3AHA2|A3AHA2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010174 PE=4 SV=1
          Length = 1028

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +1

Query: 415 GEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           GEANFLGGVAK+ GVKD +  +AK RFF+IYL+K
Sbjct: 39  GEANFLGGVAKLKGVKDFNAESAKKRFFEIYLDK 72


>tr|B8A310|B8A310_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 446

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 25/51 (49%), Positives = 34/51 (66%)
 Frame = +1

Query: 364 EISVQMQTGQLLKL*FAGEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           E+ V++     +     GEANFLGGVA+  GVKD +  +AK RFF+IYL+K
Sbjct: 105 EMGVEVAVDDFVPFMGTGEANFLGGVARAKGVKDFNPESAKKRFFEIYLDK 155


>tr|A9PES3|A9PES3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 308

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 26/51 (50%), Positives = 32/51 (62%)
 Frame = +1

Query: 364 EISVQMQTGQLLKL*FAGEANFLGGVAKVHGVKDLDVSTAKSRFFQIYLEK 516
           E+ V++     +     GEANFLGGVA V GVK  D   AK RFF+IYL+K
Sbjct: 111 EMGVEVTVDDFVPFMGTGEANFLGGVANVKGVKGFDTEMAKKRFFEIYLDK 161