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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912408
Clone id YMU001_000018_F11
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCCATAGCATATAGTCCTTCGACATGTTCAAAAGAACGAGCAGAATGACTGGGCTCTCT
TTGTACTGAGTTGACCAATGCATTATGTGAATTGGAATACATCTTGGCCAGCTGTACTAG
CATGTAATGCAGATAATGCGGAAATAGCCAGAAGGAGACTTTTGCTACAGGGTTCACAAT
CCTTATTTAGTAGTTTATGGAAAGAGTTATATATCGAAGCAGCACATGTGCTCCATGCGC
ATGATTATGCATTGACTTGATGGGATCATTTACAGTCTTCTTCAAAGCTTTATGCTTCTA
TGCGAGCTTGTCAGAAGGAAAGTGGCATTGATTTTTTGAGTTCCATGAGATAATGACCTC
CAAGTTAGAGAGTTATTGGACAGGACATACACCCTGTTTCTTCTGGTTGAAATGTTGCAA
AAAGTATTTTGTGCTATGTTGGTTATGTTTCTAGATATACATGCCGAAAGGTAGATATTT
TATCCTGGTTTTATTGTGACTTGGAGGTATCACGAGA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912408|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_F11.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A3Q9K3
Definition tr|A3Q9K3|A3Q9K3_SHELP Putative uncharacterized protein OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Align length 64
Score (bit) 34.7
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912408|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_F11.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3Q9K3|A3Q9K3_SHELP Putative uncharacterized protein OS=Shewa...    35   2.9  
tr|Q7RPC0|Q7RPC0_PLAYO Putative uncharacterized protein PY01539 ...    33   8.3  

>tr|A3Q9K3|A3Q9K3_SHELP Putative uncharacterized protein
           OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
           GN=Shew_0279 PE=3 SV=1
          Length = 142

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = -3

Query: 476 IYLSACISRNITNIAQNTFCNISTRRNRVYVLSNNSLTWRSLSHGTQKINATFLLTSSHR 297
           +++SAC S  I    ++       + ++ +V+ NN+L W+ L    QK+N +F +  S +
Sbjct: 34  LFVSACQSNLIAQSERDYLEVTPAQLSKYWVIQNNTLNWQGLIEQKQKLNISFGINPSGQ 93

Query: 296 SIKL 285
            + L
Sbjct: 94  LVDL 97


>tr|Q7RPC0|Q7RPC0_PLAYO Putative uncharacterized protein PY01539
           OS=Plasmodium yoelii yoelii GN=PY01539 PE=4 SV=1
          Length = 600

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 473 YLSACISRNITNIAQNTFC-NISTRRNRVYVLSNNSLTWRSLSHGTQKINATFLL 312
           Y++ C S N+    +NT   N++  RN  Y++++ ++TW  L+     +   FL+
Sbjct: 313 YINNCTSENVDEFEKNTNSFNLNGPRNASYIITSKNMTWAILNIIKPNVKFDFLI 367