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NBDC - LSDB Archive
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BP912413
Clone id YMU001_000018_G04
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCTTTTGTACATTGGCTTGTCTTCTTCGTTGCTTCTCTCGAGAATACC
GATATTCTCGATCGATGTCTCGAGACTTCTCCCTGTCATGGCGTTCATAGTCCCTACTTC
TGCTGTGGGAGCGCTCTTTGTGCATTCGTCGCTCAGCCTCCTTCTCTCGTTCTCTTTCAT
AATCTTTGTCCCGGTCAATCTCTCTGCTCCGGTGTCTCCTATCCCCGTCTCTGTAATCCC
TATCAGATTCCCTGTAGGAACGGTCTCCATGGTCACGGTGTGACCGTTCAGATCTATCTC
GGTCGCGGTCGCGATCACGATCACGGTCTCTGTCACGGTC
■■Homology search results ■■ -
sp_hit_id Q54QQ2
Definition sp|Q54QQ2|Y5634_DICDI Uncharacterized protein DDB_G0283697 OS=Dictyostelium discoideum
Align length 32
Score (bit) 36.6
E-value 0.041
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912413|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_G04.
         (326 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54QQ2|Y5634_DICDI Uncharacterized protein DDB_G0283697 OS=Di...    37   0.041
sp|Q96IZ7|RSRC1_HUMAN Arginine/serine-rich coiled-coil protein 1...    35   0.091
sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa O...    35   0.15 
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa O...    35   0.15 
sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa O...    35   0.15 
sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa O...    34   0.20 
sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS...    34   0.20 
sp|Q2KIC0|CCD55_BOVIN Coiled-coil domain-containing protein 55 O...    34   0.26 
sp|Q86VM9|ZCH18_HUMAN Zinc finger CCCH domain-containing protein...    33   0.34 
sp|Q5PPJ2|RSRC1_RAT Arginine/serine-rich coiled-coil protein 1 O...    33   0.34 
sp|Q9DBU6|RSRC1_MOUSE Arginine/serine-rich coiled-coil protein 1...    33   0.34 
sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rat...    33   0.34 
sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=M...    33   0.34 
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helic...    33   0.45 
sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Ar...    32   0.77 
sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 O...    32   0.77 
sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 O...    32   0.77 
sp|Q551H4|FRAY2_DICDI Serine/threonine-protein kinase fray2 OS=D...    32   0.77 
sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=P...    32   0.77 
sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=H...    32   0.77 
sp|Q6TQE1|ZCH18_RAT Zinc finger CCCH domain-containing protein 1...    32   1.0  
sp|Q0P678|ZCH18_MOUSE Zinc finger CCCH domain-containing protein...    32   1.0  
sp|Q8K194|SNR27_MOUSE U4/U6.U5 small nuclear ribonucleoprotein 2...    32   1.0  
sp|Q6DH74|SNR27_DANRE U4/U6.U5 small nuclear ribonucleoprotein 2...    32   1.0  
sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa O...    32   1.0  
sp|Q5R8J6|RSRC2_PONAB Arginine/serine-rich coiled-coil protein 2...    32   1.0  
sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2...    32   1.0  
sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Tr...    32   1.3  
sp|Q7ZYR8|RSRC2_XENLA Arginine/serine-rich coiled-coil protein 2...    32   1.3  
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-r...    31   1.7  

>sp|Q54QQ2|Y5634_DICDI Uncharacterized protein DDB_G0283697
           OS=Dictyostelium discoideum GN=DDB_G0283697 PE=4 SV=1
          Length = 853

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRR 21
           S S  RDY   DR++SRD DR+YR SR+ + R
Sbjct: 318 SRSDHRDYRDRDRDRSRDRDRDYRDSRDYRDR 349


>sp|Q96IZ7|RSRC1_HUMAN Arginine/serine-rich coiled-coil protein 1
           OS=Homo sapiens GN=RSRC1 PE=2 SV=1
          Length = 334

 Score = 35.4 bits (80), Expect = 0.091
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           SHSRS +   H R +SR  DRE R  R+K++R +
Sbjct: 116 SHSRSSERSSHRRTRSRSRDRERRKGRDKEKREK 149


>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa
           OS=Mus musculus GN=Snrnp70 PE=1 SV=2
          Length = 448

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRRRQA 12
           R R+ ER +R + RD +RE R SR + RRR++
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRS 266



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDRE--YRYSREKQRRRQ 15
           S SR +D  R  RE+S+D DR+   R SR ++R R+
Sbjct: 266 SRSRDKDERRRSRERSKDKDRDRKRRSSRSRERARR 301


>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa
           OS=Homo sapiens GN=SNRNP70 PE=1 SV=2
          Length = 437

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRRRQA 12
           R R+ ER +R + RD +RE R SR + RRR++
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRS 266



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDRE--YRYSREKQRRRQ 15
           S SR ++  R  RE+S+D DR+   R SR ++R R+
Sbjct: 266 SRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARR 301


>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa
           OS=Bos taurus GN=SNRNP70 PE=2 SV=1
          Length = 439

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRRRQA 12
           R R+ ER +R + RD +RE R SR + RRR++
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRS 266



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDRE--YRYSREKQRRRQ 15
           S SR ++  R  RE+S+D DR+   R SR ++R R+
Sbjct: 266 SRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARR 301


>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa
           OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1
          Length = 471

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRRRQA 12
           R R+ +R +R + RD +RE R SR ++RRR++
Sbjct: 226 RERERDRRERSRERDKERERRRSRSRERRRRS 257


>sp|O77033|CYC8_DICDI General transcriptional corepressor trfA
            OS=Dictyostelium discoideum GN=trfA PE=2 SV=1
          Length = 1390

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 113  HSRSRDYERHDREKSRDIDREYRYSREKQRRRQANVQ 3
            + R RD ER +RE+ RD +RE    RE++R R+ N Q
Sbjct: 1340 NERDRDRER-ERERERDREREREREREREREREKNKQ 1375


>sp|Q2KIC0|CCD55_BOVIN Coiled-coil domain-containing protein 55
           OS=Bos taurus GN=CCDC55 PE=2 SV=1
          Length = 559

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 107 RSRDY-ERHDREKSRDIDREYRYSREKQRRRQAN 9
           R RD  ER+DRE  R+ DRE   SRE++R RQ N
Sbjct: 366 RGRDERERNDREWKREKDREKYPSREQERHRQRN 399


>sp|Q86VM9|ZCH18_HUMAN Zinc finger CCCH domain-containing protein 18
           OS=Homo sapiens GN=ZC3H18 PE=1 SV=1
          Length = 953

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           R RD ER  R++ R+ +RE+   +E+QRR++
Sbjct: 421 RERDRERERRQREREREREHERDKERQRRKE 451


>sp|Q5PPJ2|RSRC1_RAT Arginine/serine-rich coiled-coil protein 1
           OS=Rattus norvegicus GN=Rsrc1 PE=2 SV=1
          Length = 334

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           SHSRS +   H R +SR  DR+ R  R+K++R +
Sbjct: 116 SHSRSSERSSHRRTRSRSRDRDRRKVRDKEKREK 149
tr_hit_id Q0IER5
Definition tr|Q0IER5|Q0IER5_AEDAE Putative uncharacterized protein (AAEL008100-PA) OS=Aedes aegypti
Align length 34
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912413|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_G04.
         (326 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0IER5|Q0IER5_AEDAE Putative uncharacterized protein (AAEL008...    38   0.22 
tr|A9V4U1|A9V4U1_MONBE Predicted protein OS=Monosiga brevicollis...    38   0.22 
tr|B5DLW5|B5DLW5_DROPS GA27913 OS=Drosophila pseudoobscura pseud...    38   0.28 
tr|B4H4G4|B4H4G4_DROPE GL18235 OS=Drosophila persimilis GN=GL182...    38   0.28 
tr|A8XPA8|A8XPA8_CAEBR Putative uncharacterized protein OS=Caeno...    38   0.28 
tr|B4MSR4|B4MSR4_DROWI GK20023 OS=Drosophila willistoni GN=GK200...    37   0.63 
tr|Q2B3I5|Q2B3I5_9BACI Spore coat-associated protein JA OS=Bacil...    36   0.83 
tr|A5JZU1|A5JZU1_PLAVI Eukaryotic translation initiation factor ...    36   1.1  
tr|Q2UNK0|Q2UNK0_ASPOR Predicted protein OS=Aspergillus oryzae G...    36   1.1  
tr|B8NJM0|B8NJM0_ASPFL Arginine rich protein OS=Aspergillus flav...    36   1.1  
tr|Q2T9Y0|Q2T9Y0_BOVIN Arginine/serine-rich coiled-coil 1 OS=Bos...    35   1.4  
tr|Q7RG05|Q7RG05_PLAYO Eukaryotic translation initiation factor ...    35   1.4  
tr|A8NGV7|A8NGV7_BRUMA LD06138p, putative OS=Brugia malayi GN=Bm...    35   1.4  
tr|B3MZH5|B3MZH5_DROAN GF19179 OS=Drosophila ananassae GN=GF1917...    35   1.8  
tr|B3L3F4|B3L3F4_PLAKH RNA binding protein, putative OS=Plasmodi...    35   1.8  
tr|A8NTW6|A8NTW6_BRUMA U2 auxiliary factor 65 kDa subunit, putat...    35   1.8  
tr|B2RZ74|B2RZ74_RAT Snrp70 protein (U1 small nuclear ribonucleo...    35   2.4  
tr|A2RS68|A2RS68_MOUSE U1 small nuclear ribonucleoprotein polype...    35   2.4  
tr|Q55G70|Q55G70_DICDI Initiation factor eIF-4 gamma middle doma...    35   2.4  
tr|B4PWL8|B4PWL8_DROYA GE17181 OS=Drosophila yakuba GN=GE17181 P...    35   2.4  
tr|B4LNR3|B4LNR3_DROVI GJ21042 OS=Drosophila virilis GN=GJ21042 ...    35   2.4  
tr|B3MZN6|B3MZN6_DROAN GF19092 OS=Drosophila ananassae GN=GF1909...    35   2.4  
tr|B3KPV0|B3KPV0_HUMAN cDNA FLJ32246 fis, clone PROST1000097, hi...    35   2.4  
tr|A8KAQ5|A8KAQ5_HUMAN cDNA FLJ77404, highly similar to Homo sap...    35   2.4  
tr|Q0D0X3|Q0D0X3_ASPTN Predicted protein OS=Aspergillus terreus ...    35   2.4  
tr|A8PCS9|A8PCS9_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.4  
tr|A4QR81|A4QR81_MAGGR Putative uncharacterized protein OS=Magna...    35   2.4  
tr|A1C5H8|A1C5H8_ASPCL Myb-like DNA-binding protein, putative OS...    35   2.4  
tr|Q6LYF9|Q6LYF9_METMP Replication protein A OS=Methanococcus ma...    35   2.4  
tr|B8A544|B8A544_DANRE Novel protein similar to H.sapiens RBM25,...    34   3.2  

>tr|Q0IER5|Q0IER5_AEDAE Putative uncharacterized protein
           (AAEL008100-PA) OS=Aedes aegypti GN=AAEL008100 PE=4 SV=1
          Length = 551

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRRRQANV 6
           R RD ER  R++ RD +RE+R  RE+ R R+A++
Sbjct: 431 RDRDRERGGRQRDRDREREHRRERERDREREASI 464


>tr|A9V4U1|A9V4U1_MONBE Predicted protein OS=Monosiga brevicollis
           GN=33340 PE=4 SV=1
          Length = 359

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = -1

Query: 107 RSRDYERHDREKSRDIDREYRYSREKQRR 21
           RSRDY+R DR++SRD DR+  Y R+ +RR
Sbjct: 77  RSRDYDR-DRDRSRDYDRDRSYDRDSERR 104


>tr|B5DLW5|B5DLW5_DROPS GA27913 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA27913 PE=4 SV=1
          Length = 992

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           S SRS+D+ER +RE+ RD +RE R  REK+R R+
Sbjct: 354 SKSRSKDHER-ERERERDREREARELREKERERE 386


>tr|B4H4G4|B4H4G4_DROPE GL18235 OS=Drosophila persimilis GN=GL18235
           PE=4 SV=1
          Length = 976

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           S SRS+D+ER +RE+ RD +RE R  REK+R R+
Sbjct: 338 SKSRSKDHER-ERERERDREREARELREKERERE 370


>tr|A8XPA8|A8XPA8_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG16678 PE=3 SV=2
          Length = 1000

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -1

Query: 110 SRSRDYERHDREKSRDIDREYRYSREKQRRRQA 12
           SR RDY+R DR K RD DR+ +  +EK+  + A
Sbjct: 39  SRDRDYDRRDRGKQRDADRQKQKEKEKEASKSA 71


>tr|B4MSR4|B4MSR4_DROWI GK20023 OS=Drosophila willistoni GN=GK20023
           PE=4 SV=1
          Length = 1234

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQA 12
           S  R RD ER DR++ RD DRE    RE++R R +
Sbjct: 4   SSGRDRDRERGDRDRDRDRDRERERVRERERERNS 38



 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
 Frame = -1

Query: 110 SRSRDYER-------HDREKSRDIDREYRYSREKQRRRQ 15
           SRSRDY++        DRE+ R  DRE    REK R R+
Sbjct: 88  SRSRDYDKDKRLDKERDRERDRQRDREKEREREKDRERE 126


>tr|Q2B3I5|Q2B3I5_9BACI Spore coat-associated protein JA OS=Bacillus
           sp. NRRL B-14911 GN=B14911_17645 PE=4 SV=1
          Length = 93

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +2

Query: 92  HSPYFCCGSALCAFVAQPPSLVL------FHNLCPGQSLCSGVSYPRLCNPYQIPCRNGL 253
           HSPY  C      + + PP L +           P ++L  G  +  L + Y  P + G+
Sbjct: 30  HSPYDPCPPLKIKYYSTPPQLYMHFQPPNLEQFPPHEALMRGTLWKPLYDYYDNPYKKGI 89

Query: 254 HGHG 265
           HGHG
Sbjct: 90  HGHG 93


>tr|A5JZU1|A5JZU1_PLAVI Eukaryotic translation initiation factor 3
            subunit 10, putative OS=Plasmodium vivax GN=PVX_123340
            PE=4 SV=1
          Length = 1285

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -1

Query: 116  SHSRSRDYE-----RHDREKSRDIDREYRYSREKQRRR 18
            S  R R+Y      R DREK RD DR+YR  R++  RR
Sbjct: 1107 SRDRDREYRKDKDYRRDREKERDRDRDYRRDRDRDYRR 1144



 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -1

Query: 107  RSRDYER---HDREKSRDIDREYRYSREKQRRR 18
            R RD ER    DRE+ RD DR+ +Y ++K+ RR
Sbjct: 1064 RERDRERDRDRDRERDRDKDRDRKYRKDKEYRR 1096


>tr|Q2UNK0|Q2UNK0_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090001000333 PE=4 SV=1
          Length = 736

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           + SR RD ER DR++ +D DR+    RE+ R R+
Sbjct: 534 NRSRDRDRERRDRDRDQDRDRDRERDRERDRERE 567


>tr|B8NJM0|B8NJM0_ASPFL Arginine rich protein OS=Aspergillus flavus
           NRRL3357 GN=AFLA_067410 PE=4 SV=1
          Length = 725

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 116 SHSRSRDYERHDREKSRDIDREYRYSREKQRRRQ 15
           + SR RD ER DR++ +D DR+    RE+ R R+
Sbjct: 523 NRSRDRDRERRDRDRDQDRDRDRERDRERDRERE 556