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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912421
Clone id YMU001_000018_G12
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTAGACATTCTTATCAATGTGATATTGTATGGACAAAGTCAGGA
CATGACTGTACATCATCTAGTTGCCGGCTTTTGATTGTCAGCAGAAAGACCCAATGGAAA
ATCTGTATCGGTAAATGTCTGTAGAAGTCAAATAATATTACAGGTACAAGAGAGCTCTCT
CTCAAAATCTGCTAGCTATAGTACAGGGATCCATTATCAGCTCAAGCTCCATATGTCTTT
GATTAGAAACTTGAGTATGATTGGATAGCGATTCATGGACACCCACCAAATGACATGAAA
CTTTACAATCTCATAGATCTAGTCTATGAGTGGCGACAATTGTGCGAGGCTTGAGAGCCC
TAGGTGTTGTTACAGGGTCAATGCCGCACTCAAATATCAGTCTTCGGAGCCACATATTCT
TATGCTTAAACCAGTAATATTCTCTTCTTGATTCGTCAGGACTTGAATAAACATCTTCTT
GAGTCATGGAAGTTAGTTTACTAAAATACAAGTTCTTACAATCTTCTTGTATACTAGAAA
CAAAGAATGTGG
■■Homology search results ■■ -
sp_hit_id P04860
Definition sp|P04860|PHOSP_SENDZ Phosphoprotein OS=Sendai virus (strain Z)
Align length 61
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912421|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_G12.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04860|PHOSP_SENDZ Phosphoprotein OS=Sendai virus (strain Z) ...    32   1.9  
sp|P04859|PHOSP_SENDH Phosphoprotein OS=Sendai virus (strain Har...    31   4.3  
sp|P14252|PHOSP_SENDF Phosphoprotein OS=Sendai virus (strain Fus...    31   4.3  
sp|Q9HXN2|PUR4_PSEAE Phosphoribosylformylglycinamidine synthase ...    30   7.4  
sp|Q6D238|PUR4_ERWCT Phosphoribosylformylglycinamidine synthase ...    30   7.4  
sp|P14251|PHOSP_SEND6 Phosphoprotein OS=Sendai virus (strain 6/9...    30   9.5  
sp|Q2NS22|PUR4_SODGM Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q3YYZ8|PUR4_SHISS Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q32D15|PUR4_SHIDS Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q31XT0|PUR4_SHIBS Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q15R69|PUR4_PSEA6 Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q1R8H7|PUR4_ECOUT Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|P15254|PUR4_ECOLI Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q8FF26|PUR4_ECOL6 Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q0TET1|PUR4_ECOL5 Phosphoribosylformylglycinamidine synthase ...    30   9.7  
sp|Q8XA46|PUR4_ECO57 Phosphoribosylformylglycinamidine synthase ...    30   9.7  

>sp|P04860|PHOSP_SENDZ Phosphoprotein OS=Sendai virus (strain Z)
           GN=P/V/C PE=2 SV=1
          Length = 568

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +2

Query: 62  VAGF*LSAERPNGKSVSVNVCRSQIILQVQESSLSKSASYSTGIHYQLKLHMSLIRNLSM 241
           V G  LSAE+ + + V  N    Q++ Q+QES  S   +Y     YQ + +  L+ NLS 
Sbjct: 371 VCGLILSAEKSSARKVDEN---KQLLKQIQESVESFRDTYKRFSEYQKEQNSLLMSNLST 427

Query: 242 I 244
           +
Sbjct: 428 L 428


>sp|P04859|PHOSP_SENDH Phosphoprotein OS=Sendai virus (strain
           Harris) GN=P/V/C PE=1 SV=1
          Length = 568

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 62  VAGF*LSAERPNGKSVSVNVCRSQIILQVQESSLSKSASYSTGIHYQLKLHMSLIRNLSM 241
           V G  LSAE+ + + V  N    Q++ Q+QES  S    Y     YQ + +  L+ NLS 
Sbjct: 371 VCGLILSAEKSSARKVDEN---KQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLST 427

Query: 242 I 244
           +
Sbjct: 428 L 428


>sp|P14252|PHOSP_SENDF Phosphoprotein OS=Sendai virus (strain
           Fushimi) GN=P/V/C PE=2 SV=1
          Length = 568

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 62  VAGF*LSAERPNGKSVSVNVCRSQIILQVQESSLSKSASYSTGIHYQLKLHMSLIRNLSM 241
           V G  LSAE+ + + V  N    Q++ Q+QES  S    Y     YQ + +  L+ NLS 
Sbjct: 371 VCGLILSAEKSSARKVDEN---KQLLKQIQESVESFRDIYKRFSEYQKEQNSLLMSNLST 427

Query: 242 I 244
           +
Sbjct: 428 L 428


>sp|Q9HXN2|PUR4_PSEAE Phosphoribosylformylglycinamidine synthase
           OS=Pseudomonas aeruginosa GN=purL PE=3 SV=1
          Length = 1298

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 199 SAQAPYVFD*KLEYDWIAIHGHPPNDMKLYNLIDLV 306
           +A+   + D KL  +W+A  GHP  D +LY+ +  V
Sbjct: 723 AARVGKLSDIKLSANWMAAAGHPGEDARLYDTVKAV 758


>sp|Q6D238|PUR4_ERWCT Phosphoribosylformylglycinamidine synthase
           OS=Erwinia carotovora subsp. atroseptica GN=purL PE=3
           SV=1
          Length = 1294

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 229 KLEYDWIAIHGHPPNDMKLYNLIDLVYEWRQLCEA 333
           KL  +W+A  GHP  D  LY+ +  V E  +LC A
Sbjct: 733 KLSANWMAAAGHPGEDAGLYDAVKAVGE--ELCPA 765


>sp|P14251|PHOSP_SEND6 Phosphoprotein OS=Sendai virus (strain 6/94)
           GN=P/V/C PE=3 SV=1
          Length = 568

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +2

Query: 62  VAGF*LSAERPNGKSVSVNVCRSQIILQVQESSLSKSASYSTGIHYQLKLHMSLIRNLSM 241
           V G  LSAE+ + + V  N    Q++ Q+QE+  S    Y     YQ + +  L+ NLS 
Sbjct: 371 VCGLILSAEKSSARKVDEN---KQLLKQIQENVESFRDIYKRFSEYQKEQNSLLMSNLST 427

Query: 242 I 244
           +
Sbjct: 428 L 428


>sp|Q2NS22|PUR4_SODGM Phosphoribosylformylglycinamidine synthase
           OS=Sodalis glossinidius (strain morsitans) GN=purL PE=3
           SV=1
          Length = 1295

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 229 KLEYDWIAIHGHPPNDMKLYNLIDLVYEWRQLCEA 333
           KL  +W+A  GHP  D  LY  +  V E  +LC A
Sbjct: 734 KLSANWMAAAGHPGEDAGLYQAVKAVGE--ELCPA 766


>sp|Q3YYZ8|PUR4_SHISS Phosphoribosylformylglycinamidine synthase
           OS=Shigella sonnei (strain Ss046) GN=purL PE=3 SV=3
          Length = 1295

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 229 KLEYDWIAIHGHPPNDMKLYNLIDLVYEWRQLCEA 333
           KL  +W+A  GHP  D  LY  +  V E  +LC A
Sbjct: 735 KLSANWMAAAGHPGEDAGLYEAVKAVGE--ELCPA 767


>sp|Q32D15|PUR4_SHIDS Phosphoribosylformylglycinamidine synthase
           OS=Shigella dysenteriae serotype 1 (strain Sd197)
           GN=purL PE=3 SV=3
          Length = 1295

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 229 KLEYDWIAIHGHPPNDMKLYNLIDLVYEWRQLCEA 333
           KL  +W+A  GHP  D  LY  +  V E  +LC A
Sbjct: 735 KLSANWMAAAGHPGEDAGLYEAVKAVGE--ELCPA 767


>sp|Q31XT0|PUR4_SHIBS Phosphoribosylformylglycinamidine synthase
           OS=Shigella boydii serotype 4 (strain Sb227) GN=purL
           PE=3 SV=3
          Length = 1295

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 229 KLEYDWIAIHGHPPNDMKLYNLIDLVYEWRQLCEA 333
           KL  +W+A  GHP  D  LY  +  V E  +LC A
Sbjct: 735 KLSANWMAAAGHPGEDAGLYEAVKAVGE--ELCPA 767
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912421|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_G12.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******