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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912422
Clone id YMU001_000018_H02
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTTAAAGCTCAAAGATGAAGAGCCTGTTCAGTTGATGGAGAAGATGGGCACAAAATATC
AAATTGTACTGACAAAGAGTGATATTGTAACGCCAGTGGATCTGGGTCGGCGTGCGACAC
AGATCCTAGAGATTTCAAGGGGAATAAATGTTTGATGCTGCCAATGATTATGGTTAGCTC
CAAAACTGGAGAAGGACTAGAGTTTTTCCGGGGAAATGTTGCAAAACTTGCGAGGGCCAG
CTTGATTTGAAGCTCGGTATTTGCTGGCGAAGCTTCAATTGGTGGTGTCTTGTTATATGA
GAATAAAAAAGCATTTGGCTAGTCGTTGAGACTTTTTGAGCTATCATAATTTTTGAGAAT
TTGTATGGTATGGTATCCCTTGATAGAGATTCACTGTCTGGAGACAAATACTTCCAAAAC
AAGAGTTTTCGGCAACTACGCAGACAGTCTTTTGTCTTTATAGAAGGTGATGGCAGTCGT
CGTTGTAAATGCTACAAGCAATAGAAACCATTGAACTCTAGTTTTGCCAGAACCTTACTA
GGGAGTTTGTGCAGTTTGTTCAAGCTGGATGG
■■Homology search results ■■ -
sp_hit_id Q5FPX9
Definition sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein engB OS=Gluconobacter oxydans
Align length 41
Score (bit) 32.3
E-value 0.055
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912422|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_H02.
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein engB OS=Glucon...    32   0.055
sp|Q8UIB4|ENGB_AGRT5 Probable GTP-binding protein engB OS=Agroba...    36   0.12 
sp|A6U5K8|ENGB_SINMW Probable GTP-binding protein engB OS=Sinorh...    35   0.20 
sp|Q07TY1|ENGB_RHOP5 Probable GTP-binding protein engB OS=Rhodop...    35   0.20 
sp|Q98D85|ENGB_RHILO Probable GTP-binding protein engB OS=Rhizob...    35   0.26 
sp|Q92SF6|ENGB_RHIME Probable GTP-binding protein engB OS=Rhizob...    35   0.35 
sp|A1UTM1|ENGB_BARBK Probable GTP-binding protein engB OS=Barton...    33   0.77 
sp|Q21B49|ENGB_RHOPB Probable GTP-binding protein engB OS=Rhodop...    33   1.0  
sp|P64067|ENGB_BRUSU Probable GTP-binding protein engB OS=Brucel...    33   1.3  
sp|P64066|ENGB_BRUME Probable GTP-binding protein engB OS=Brucel...    33   1.3  
sp|Q576T9|ENGB_BRUAB Probable GTP-binding protein engB OS=Brucel...    33   1.3  
sp|Q2YJR1|ENGB_BRUA2 Probable GTP-binding protein engB OS=Brucel...    33   1.3  
sp|Q6G2G5|ENGB_BARHE Probable GTP-binding protein engB OS=Barton...    32   1.7  
sp|A9IXE1|ENGB_BART1 Probable GTP-binding protein engB OS=Barton...    32   2.2  
sp|Q6NC42|ENGB_RHOPA Probable GTP-binding protein engB OS=Rhodop...    32   2.9  
sp|Q5UR72|YR624_MIMIV Putative GTP-binding protein R624 OS=Acant...    31   5.0  
sp|B0UVL9|HSCA_HAES2 Chaperone protein hscA homolog OS=Haemophil...    31   5.0  
sp|Q0I1K8|HSCA_HAES1 Chaperone protein hscA homolog OS=Haemophil...    31   5.0  
sp|Q2GAU7|ENGB_NOVAD Probable GTP-binding protein engB OS=Novosp...    31   5.0  
sp|Q89BP9|ENGB_BRAJA Probable GTP-binding protein engB OS=Bradyr...    31   5.0  
sp|Q96KV7|WDR90_HUMAN WD repeat-containing protein 90 OS=Homo sa...    30   6.5  
sp|Q1MM59|ENGB_RHIL3 Probable GTP-binding protein engB OS=Rhizob...    30   6.5  
sp|Q3UMF0|COBL1_MOUSE Cordon-bleu protein-like 1 OS=Mus musculus...    30   6.5  
sp|Q6FZ15|ENGB_BARQU Probable GTP-binding protein engB OS=Barton...    30   8.5  

>sp|Q5FPX9|ENGB_GLUOX Probable GTP-binding protein engB
           OS=Gluconobacter oxydans GN=engB PE=3 SV=1
          Length = 227

 Score = 32.3 bits (72), Expect(2) = 0.055
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQI 125
           LK  D++ ++L+++    +QIVLTK D V P  L  +  ++
Sbjct: 138 LKASDKDVMELLDRAAVVFQIVLTKCDQVKPKALAAKIAEV 178



 Score = 23.5 bits (49), Expect(2) = 0.055
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 164 MIMVSSKTGEGLEFFRGNVAKLA 232
           +I  SS+TG G+E  R  +A+ A
Sbjct: 192 IIATSSETGFGIEDLRAEIARFA 214


>sp|Q8UIB4|ENGB_AGRT5 Probable GTP-binding protein engB
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=engB PE=3 SV=1
          Length = 217

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K  DEE + L++K    YQ+VLTK+D +  V + R   + LE
Sbjct: 139 IKKNDEEVLSLLDKAAVSYQVVLTKTDKIKDVGVPRLIGETLE 181


>sp|A6U5K8|ENGB_SINMW Probable GTP-binding protein engB
           OS=Sinorhizobium medicae (strain WSM419) GN=engB PE=3
           SV=1
          Length = 217

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K  DEE + L++K    YQIVLTK+D +    + R   + LE
Sbjct: 139 IKKNDEEVLALLDKAAVSYQIVLTKTDKIKAAGVPRLLAETLE 181


>sp|Q07TY1|ENGB_RHOP5 Probable GTP-binding protein engB
           OS=Rhodopseudomonas palustris (strain BisA53) GN=engB
           PE=3 SV=1
          Length = 216

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILEISR 140
           +K  D E +  ++K    YQIVLTK+D V P +L  R     E  R
Sbjct: 136 IKDVDNEVLTTLDKSAVSYQIVLTKADQVKPAELAERVAATTEALR 181


>sp|Q98D85|ENGB_RHILO Probable GTP-binding protein engB OS=Rhizobium
           loti GN=engB PE=3 SV=1
          Length = 212

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K KD+E + L++K    YQIVLTK+D +    + R   + L+
Sbjct: 133 IKAKDDEVLSLLDKAAVSYQIVLTKTDKIKVAGVPRLIEETLQ 175


>sp|Q92SF6|ENGB_RHIME Probable GTP-binding protein engB OS=Rhizobium
           meliloti GN=engB PE=3 SV=1
          Length = 217

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K  DE+ + L++K    YQIVLTK+D +    + R   + LE
Sbjct: 139 IKKNDEDVLALLDKAAVSYQIVLTKTDKIKAAGVPRLVAETLE 181


>sp|A1UTM1|ENGB_BARBK Probable GTP-binding protein engB
           OS=Bartonella bacilliformis (strain ATCC 35685 / KC583)
           GN=engB PE=3 SV=1
          Length = 215

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSD 83
           +K  DEE + L++K    YQI+LTKSD
Sbjct: 137 IKKNDEEVLDLLDKAAVSYQIILTKSD 163


>sp|Q21B49|ENGB_RHOPB Probable GTP-binding protein engB
           OS=Rhodopseudomonas palustris (strain BisB18) GN=engB
           PE=3 SV=1
          Length = 216

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGR 110
           LK  D++ +  ++K    YQ+VLTK+D V P +L +
Sbjct: 136 LKEVDQDVLNTLDKSAVSYQVVLTKADQVKPAELAQ 171


>sp|P64067|ENGB_BRUSU Probable GTP-binding protein engB OS=Brucella
           suis GN=engB PE=3 SV=1
          Length = 241

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGR 110
           +K  D E + L++K    YQIVLTK D + P  + R
Sbjct: 162 IKKNDAEVLDLLDKAAVSYQIVLTKIDKIKPAGVPR 197


>sp|P64066|ENGB_BRUME Probable GTP-binding protein engB OS=Brucella
           melitensis GN=engB PE=3 SV=1
          Length = 241

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGR 110
           +K  D E + L++K    YQIVLTK D + P  + R
Sbjct: 162 IKKNDAEVLDLLDKAAVSYQIVLTKIDKIKPAGVPR 197
tr_hit_id A9TN91
Definition tr|A9TN91|A9TN91_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 43
Score (bit) 58.9
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912422|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_H02.
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TN91|A9TN91_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   7e-11
tr|Q84TX8|Q84TX8_ORYSJ Os03g0816400 protein OS=Oryza sativa subs...    49   2e-09
tr|A2XNC8|A2XNC8_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-09
tr|A7NY25|A7NY25_VITVI Chromosome chr6 scaffold_3, whole genome ...    52   3e-09
tr|Q94C58|Q94C58_ARATH Putative GTP-binding protein CGPA OS=Arab...    56   2e-06
tr|Q3E897|Q3E897_ARATH Uncharacterized protein At5g58370.2 OS=Ar...    55   3e-06
tr|A3AP12|A3AP12_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|B3RYI9|B3RYI9_TRIAD Putative uncharacterized protein OS=Trich...    37   0.78 
tr|B6KAZ1|B6KAZ1_TOXGO GTP-binding conserved hypothetical domain...    36   1.3  
tr|A3VV58|A3VV58_9PROT GTP-binding protein OS=Parvularcula bermu...    36   1.7  
tr|B8EPG6|B8EPG6_METSI GTP-binding protein HSR1-related OS=Methy...    35   3.0  
tr|A0NSE4|A0NSE4_9RHOB GTP-binding protein OS=Labrenzia aggregat...    35   3.0  
tr|Q9XID8|Q9XID8_ARATH Putative Aldo/keto reductase OS=Arabidops...    35   3.9  
tr|Q0G0U2|Q0G0U2_9RHIZ GTP-binding protein OS=Fulvimarina pelagi...    34   5.0  
tr|Q5AF60|Q5AF60_CANAL Potential fungal zinc cluster transcripti...    34   5.0  
tr|A4YLC9|A4YLC9_BRASO Putative GTP-binding protein engB OS=Brad...    34   6.6  
tr|B8IMN0|B8IMN0_METNO GTP-binding protein HSR1-related OS=Methy...    27   9.7  

>tr|A9TN91|A9TN91_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_148111 PE=4 SV=1
          Length = 305

 Score = 58.9 bits (141), Expect(2) = 7e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           LK +DEE ++LME   TKYQIVLTK+DI+ P+DL RRATQI E
Sbjct: 222 LKPRDEELIELMENAQTKYQIVLTKTDILPPLDLARRATQIQE 264



 Score = 30.8 bits (68), Expect(2) = 7e-11
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 137 KGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLA 232
           K +K L+LP++MVSS+TG G+   R  +  LA
Sbjct: 267 KHHKQLILPVLMVSSQTGGGIPHLRKALVNLA 298


>tr|Q84TX8|Q84TX8_ORYSJ Os03g0816400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0094J08.26 PE=4 SV=1
          Length = 571

 Score = 48.5 bits (114), Expect(2) = 2e-09
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K  D E V LME+  T YQIVLTK+D+V P+D+ RRA +I E
Sbjct: 490 MKPLDYELVDLMERSKTPYQIVLTKTDLVFPIDVARRAVEIQE 532



 Score = 36.6 bits (83), Expect(2) = 2e-09
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +2

Query: 137 KGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 235
           K NK ++ P++MVSSKTG G+   RG + K+AR
Sbjct: 535 KKNKSVVRPVMMVSSKTGAGVRNLRGVLGKIAR 567


>tr|A2XNC8|A2XNC8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14063 PE=4 SV=1
          Length = 571

 Score = 48.5 bits (114), Expect(2) = 2e-09
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K  D E V LME+  T YQIVLTK+D+V P+D+ RRA +I E
Sbjct: 490 MKPLDYELVDLMERSKTPYQIVLTKTDLVFPIDVARRAVEIQE 532



 Score = 36.6 bits (83), Expect(2) = 2e-09
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +2

Query: 137 KGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 235
           K NK ++ P++MVSSKTG G+   RG + K+AR
Sbjct: 535 KKNKSVVRPVMMVSSKTGAGVRNLRGVLGKIAR 567


>tr|A7NY25|A7NY25_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023958001
           PE=4 SV=1
          Length = 573

 Score = 52.0 bits (123), Expect(2) = 3e-09
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K +D E + LME+  TKYQI+LTK+D+V P+D+ RRA QI E
Sbjct: 492 MKPRDHELIDLMERAQTKYQILLTKTDLVFPIDVARRAMQIEE 534



 Score = 32.3 bits (72), Expect(2) = 3e-09
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 137 KGNKCLMLPMIMVSSKTGEGLEFFRGNVAKLAR 235
           K NK ++ P++MVSSK+G G+   R  + K+ R
Sbjct: 537 KANKSIVQPLMMVSSKSGAGIPSLRTVLGKIGR 569


>tr|Q94C58|Q94C58_ARATH Putative GTP-binding protein CGPA
           OS=Arabidopsis thaliana GN=At5g58370 PE=2 SV=1
          Length = 446

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 30/58 (51%), Positives = 40/58 (68%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILEISRGINV*CCQ*LWL 176
           +K +D+E + LME+  TKYQIVLTK+D+V P+D+ RRA QI E  +  N    Q LWL
Sbjct: 384 MKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEEKLKA-NRSIVQPLWL 440


>tr|Q3E897|Q3E897_ARATH Uncharacterized protein At5g58370.2
           OS=Arabidopsis thaliana GN=At5g58370 PE=4 SV=1
          Length = 465

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 25/43 (58%), Positives = 34/43 (79%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K +D+E + LME+  TKYQIVLTK+D+V P+D+ RRA QI E
Sbjct: 384 MKPRDQELINLMERSNTKYQIVLTKTDVVFPIDVARRAMQIEE 426


>tr|A3AP12|A3AP12_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012534 PE=4 SV=1
          Length = 831

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           +K  D E V LME+  T YQIVLTK+D+V P+D+ RRA +I E
Sbjct: 750 MKPLDYELVDLMERSKTPYQIVLTKTDLVFPIDVARRAVEIQE 792


>tr|B3RYI9|B3RYI9_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_56574 PE=4 SV=1
          Length = 239

 Score = 37.0 bits (84), Expect = 0.78
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +3

Query: 6   KLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILEISRGINV*CC 161
           K  D E + +ME  G  YQIVLTK D VT  ++ R  + + EI    N  CC
Sbjct: 160 KSNDLEALAVMEDYGLSYQIVLTKVDCVTRGNMLRLLSDVYEIVHKTN--CC 209


>tr|B6KAZ1|B6KAZ1_TOXGO GTP-binding conserved hypothetical
           domain-containing protein OS=Toxoplasma gondii ME49
           GN=TGME49_057390 PE=4 SV=1
          Length = 1466

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDL 104
           LK  D+E +  + + G  +QIVLTK+D+V P DL
Sbjct: 553 LKESDKEMLHFLHRWGVSWQIVLTKADLVKPKDL 586


>tr|A3VV58|A3VV58_9PROT GTP-binding protein OS=Parvularcula
           bermudensis HTCC2503 GN=PB2503_13189 PE=4 SV=1
          Length = 213

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 3   LKLKDEEPVQLMEKMGTKYQIVLTKSDIVTPVDLGRRATQILE 131
           LK  DEE + L+++    YQ+VLTK D + P +  RR   + E
Sbjct: 135 LKPVDEETMSLLDESAVPYQLVLTKIDKIKPTEAARRIKAVGE 177