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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912426
Clone id YMU001_000018_H06
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATACGCTCTTCAAAAGAATGCTTAGAAAGAGACTTCAACATCTTGCATTTGTTCTTACGA
GCTTCCACCTACAAAAAATGTCATGTTCCAGAGACCCGGTCCTTTAATACTCTCCTCCTG
AAGCATTATCAGTTCAGAACCAAATCCTTATTGCCTTGCTCCAACTCTTGTGGTAGTTAT
CCTGGGGCATGTGATGATTTCTGCCTGGCTTTTGAATGATTTTCTAGAGTTCCCTCACCT
TTCTCGTAGTCACTGGTATCGTCAGGCATTTGCAAGCGATGGAGTCGCTCTTGTATCATC
ATCAAACCAACAGCGTGATGAGCATCATAACACAAGGTTTCGATGATTTGGAACCCTTGA
GTTATGGATTGATCAAATGCCAAAAGGGCACACATTTGGATAGCCATAAGGTAATTCACA
ATTAGATACCTTCACCACGACGAGATGATCTCAGAGCATCTGTACTAGCAATGGCCCCTC
TCAAGATGGGCAAAGAC
■■Homology search results ■■ -
sp_hit_id Q0IHV1
Definition sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis
Align length 71
Score (bit) 33.1
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912426|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_H06.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=...    33   0.73 
sp|P43405|KSYK_HUMAN Tyrosine-protein kinase SYK OS=Homo sapiens...    31   3.6  
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punc...    30   4.7  
sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN...    30   4.7  
sp|Q64725|KSYK_RAT Tyrosine-protein kinase SYK OS=Rattus norvegi...    30   4.7  
sp|P48025|KSYK_MOUSE Tyrosine-protein kinase SYK OS=Mus musculus...    30   4.7  
sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsi...    30   6.1  
sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 OS=Caenor...    30   8.0  

>sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=inf2
            PE=2 SV=1
          Length = 1380

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -1

Query: 389  ALLAFDQSITQGFQIIETLC----YDAHHAVGLMMIQERLHRLQMPDDTSDYEKGEGTLE 222
            AL   D ++T+G Q+ E  C    Y  H  +G   +    H   +   + D +K +    
Sbjct: 1291 ALQTRDTTVTEGSQVEEDKCNDEGYPEHKTMGEHPLNSSSHSTTLQQSSEDGQKVKRGSS 1350

Query: 221  NHSKARQKSSH 189
             H K R+ S H
Sbjct: 1351 KHKKKRRSSKH 1361


>sp|P43405|KSYK_HUMAN Tyrosine-protein kinase SYK OS=Homo sapiens
           GN=SYK PE=1 SV=1
          Length = 635

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 19  CLERDFNILHLFLRASTYKKCHVPETRSFNTL--LLKHYQFRTKSLL 153
           CL  +  +LH  +      K  +PE + F+TL  L++HY ++   LL
Sbjct: 206 CLLHEGKVLHYRIDKDKTGKLSIPEGKKFDTLWQLVEHYSYKADGLL 252


>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus
           punctatus GN=rpl13 PE=2 SV=3
          Length = 211

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 208 PGRNHHMPQDNYHKSWSKAIRIWF 137
           P RN  +   ++HK W K +R WF
Sbjct: 3   PSRNGMILNPHFHKDWQKRVRTWF 26


>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio
           GN=rpl13 PE=2 SV=3
          Length = 211

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 208 PGRNHHMPQDNYHKSWSKAIRIWF 137
           P RN  +   ++HK W K +R WF
Sbjct: 3   PSRNGMILNPHFHKDWQKRVRTWF 26


>sp|Q64725|KSYK_RAT Tyrosine-protein kinase SYK OS=Rattus norvegicus
           GN=Syk PE=1 SV=1
          Length = 629

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 19  CLERDFNILHLFLRASTYKKCHVPETRSFNTL--LLKHYQFRTKSLL 153
           CL  +  +LH  +      K  +PE + F+TL  L++HY ++   LL
Sbjct: 205 CLLHEGKVLHYRIDRDKTGKLSIPEGKKFDTLWQLVEHYSYKPDGLL 251


>sp|P48025|KSYK_MOUSE Tyrosine-protein kinase SYK OS=Mus musculus
           GN=Syk PE=1 SV=2
          Length = 629

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 19  CLERDFNILHLFLRASTYKKCHVPETRSFNTL--LLKHYQFRTKSLL 153
           CL  +  +LH  +      K  +PE + F+TL  L++HY ++   LL
Sbjct: 205 CLLHEGKVLHYRIDRDKTGKLSIPEGKKFDTLWQLVEHYSYKPDGLL 251


>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis
           thaliana GN=FPP5 PE=2 SV=2
          Length = 996

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 297 HHQTNSVMSIITQGFDDLEPLSYGLIKCQKGTHLDSHKV 413
           HH   SV S+   GFD+    S    +C   T LDSHKV
Sbjct: 432 HHYPPSVTSVSEDGFDEEGSSS----ECGPATSLDSHKV 466


>sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5
           OS=Caenorhabditis elegans GN=pme-5 PE=2 SV=1
          Length = 2276

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +2

Query: 137 EPNPYCLAPTLVVVILGHVMISAWLLNDFLEFPHLSRSHWYRQAFASDGVALVSSSNQQR 316
           EPN + L P  V  + GH  I  WL    LE PH  +++    A  ++G  L+S+     
Sbjct: 594 EPNDWQLYPLSVAYLKGHYGIVTWL----LEGPHKDKAN--INAKDNNGATLLSNLLSYA 647

Query: 317 DE 322
           DE
Sbjct: 648 DE 649
tr_hit_id Q3A8Q8
Definition tr|Q3A8Q8|Q3A8Q8_CARHZ Putative adenylylsulfate reductase, alpha subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)
Align length 34
Score (bit) 37.4
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912426|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_H06.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3A8Q8|Q3A8Q8_CARHZ Putative adenylylsulfate reductase, alpha...    37   0.40 
tr|B0Z9L7|B0Z9L7_9BILA 60S ribosomal protein L13 OS=Lineus virid...    34   3.4  
tr|B2YHY9|B2YHY9_9BILA Putative 60S ribosomal protein RPL13 (Fra...    33   7.5  
tr|Q6DE64|Q6DE64_XENLA Syk-prov protein OS=Xenopus laevis GN=syk...    33   9.8  

>tr|Q3A8Q8|Q3A8Q8_CARHZ Putative adenylylsulfate reductase, alpha
           subunit OS=Carboxydothermus hydrogenoformans (strain
           Z-2901 / DSM 6008) GN=CHY_2691 PE=4 SV=1
          Length = 532

 Score = 37.4 bits (85), Expect = 0.40
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 109 TLLLKHYQFRTKSLLPCSNSCGSYPG-ACDDFCL 207
           T L+KH  FRT+S LPC    G YPG A +D+ L
Sbjct: 473 TFLIKHMAFRTESRLPCYQERGDYPGKAPEDYLL 506


>tr|B0Z9L7|B0Z9L7_9BILA 60S ribosomal protein L13 OS=Lineus viridis
           PE=2 SV=1
          Length = 207

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 208 PGRNHHMPQDNYHKSWSKAIRIWF 137
           P RN+ +P  ++HK W K +R WF
Sbjct: 3   PKRNNMVPNGHFHKEWQKYVRTWF 26


>tr|B2YHY9|B2YHY9_9BILA Putative 60S ribosomal protein RPL13
           (Fragment) OS=Novocrania anomala PE=2 SV=1
          Length = 134

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 208 PGRNHHMPQDNYHKSWSKAIRIWF 137
           P RN+ +P  ++HK W + +R WF
Sbjct: 3   PKRNNMVPNGHFHKDWQRYVRTWF 26


>tr|Q6DE64|Q6DE64_XENLA Syk-prov protein OS=Xenopus laevis GN=syk
           PE=2 SV=1
          Length = 605

 Score = 32.7 bits (73), Expect = 9.8
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 19  CLERDFNILHLFLRASTYKKCHVPETRSFNTL--LLKHYQFRTKSLL-----PCSNSCG 174
           CL  D  I H  +      K  +P+ + F+TL  L++HY ++   LL     PCS + G
Sbjct: 201 CLLHDRKISHYRIDRDKTGKLSIPDGKKFDTLWQLVEHYSYKPDGLLRVLTEPCSRATG 259