BP912431
Clone id YMU001_000018_H11
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000018_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTACTCAACTGGAAGTACGTAGTCGAACTTATGAAGGACCCTGCTAGGGAGTCTCTGAGA
GTCCTATCTTTGAATGAGCTACCCGATATACGTCCTACTGTGGATGCGTGGGATAAGAGG
AAGTGCATTAGAGAGACTTATATTGATGGAGGTGCACAAGTATGTGTTATCACTCAAACT
TGTGTATCAAAGTTGGAACTCAACATGGTGAAGAATTCAGGTTTTCGTAAAAAGCTTGTA
AACCAATCAAAGGTGAAGTGTTTGGGAGTTATAAGGGATTTGGAGGTGGATGTATTTGAT
GTTAAAGCGTTGGTAAATTGTCATGTTATGCCCACAGGTATCGGTGCTTTCTCTCTCATC
CTTGGAAGACCATGATTACAGGCAACCAAAGCTGTATAGGATCGCGGACATGGTACCATC
ACTCCCGAAGTCCCAGTCTTCTGTTGGCTTATAGTATCTGGCCTTGCAGCTACATCATAA
ACTTCCTTGAGTAGCAGTTGTAACTCCACCTGGTGTCCATCTTCACTCTTGAACCTGCCG
■■Homology search results ■■ -
sp_hit_id P06779
Definition sp|P06779|RAD7_YEAST DNA repair protein RAD7 OS=Saccharomyces cerevisiae
Align length 50
Score (bit) 35.0
E-value 0.24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912431|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_H11.
(540 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P06779|RAD7_YEAST DNA repair protein RAD7 OS=Saccharomyces ce... 35 0.24
sp|Q5YQS0|COFE_NOCFA F420-0:gamma-glutamyl ligase OS=Nocardia fa... 33 0.69
sp|Q12U25|SYA_METBU Alanyl-tRNA synthetase OS=Methanococcoides b... 33 1.2
sp|P03894|NU2M_XENLA NADH-ubiquinone oxidoreductase chain 2 OS=X... 32 2.0
sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kin... 32 2.6

>sp|P06779|RAD7_YEAST DNA repair protein RAD7 OS=Saccharomyces
cerevisiae GN=RAD7 PE=1 SV=3
Length = 565

Score = 35.0 bits (79), Expect = 0.24
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +1

Query: 19 VVELMKDPARESLRVLSLNELPDIRPTVDAWDKRKCIRETYIDGGAQVCV 168
++EL+ + AR+SLR L+LN L ++ T +A+ C TY+D G CV
Sbjct: 472 IIELLLNGARDSLRSLNLNSLKEL--TKEAFVALACPNLTYLDLGFVRCV 519


>sp|Q5YQS0|COFE_NOCFA F420-0:gamma-glutamyl ligase OS=Nocardia
farcinica GN=cofE PE=3 SV=1
Length = 452

Score = 33.5 bits (75), Expect = 0.69
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +1

Query: 43 ARESLRVLSLNELPDIRPTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELNMV---- 210
+RE LR+L + LP+ RP D ++ DG + V+T ++K E +V
Sbjct: 12 SREGLRILPVTGLPEFRPGDDVAERIAAAAPWLADG--DILVVTSKIIAKAEGRVVPAPV 69

Query: 211 ---KNSGFRKKLVNQSKVKCL 264
+ R+ LV Q V+ L
Sbjct: 70 DPEERDAVRRALVEQEAVRVL 90


>sp|Q12U25|SYA_METBU Alanyl-tRNA synthetase OS=Methanococcoides
burtonii (strain DSM 6242) GN=alaS PE=3 SV=1
Length = 923

Score = 32.7 bits (73), Expect = 1.2
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -2

Query: 536 RFKSEDGHQVELQLLLKEVYDVAARPDTISQQKTGTSGVMVPCPRSYTALVACNHGLPRM 357
R E G ++ L+ ++ ++YD P IS+ GV V P ++ +LVA H
Sbjct: 435 RHYKESGEKMPLETII-DMYDSHGIPPEISKAVASDVGVEVDLPDNFYSLVADKHSQSEE 493

Query: 356 REKAPIP 336
+E+ +P
Sbjct: 494 KEEKVVP 500


>sp|P03894|NU2M_XENLA NADH-ubiquinone oxidoreductase chain 2
OS=Xenopus laevis GN=mt-nd2 PE=3 SV=1
Length = 345

Score = 32.0 bits (71), Expect = 2.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3

Query: 369 TMITGNQSCIGSRTWYHHSRSPSLLLAYSIWPCSYII 479
T+ + + S TW HHS+ P+LLL+ ++ S+II
Sbjct: 301 TLTSSPNTSNASLTWRHHSKQPTLLLSIALILSSFII 337


>sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kinase
7 OS=Drosophila melanogaster GN=Tak1 PE=2 SV=1
Length = 678

Score = 31.6 bits (70), Expect = 2.6
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -2

Query: 509 VELQLLLKEVYD-VAARPDTISQQKTGTSGVMVPCPRSYTALVACNHGLPRMREKAPIPV 333
V Q++ KE VAA+PD++S Q+ G + P T A N + +
Sbjct: 286 VNQQIVTKESDGTVAAQPDSLSSQE----GELSPSSTQLTPTTAANANVNA--------I 333

Query: 332 GIT*QFTNALTSNTSTSKSLITP 264
I+ T+++T NTS++ S ITP
Sbjct: 334 AISKTTTSSMTENTSSTSSDITP 356


tr_hit_id A8NJA7
Definition tr|A8NJA7|A8NJA7_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 123
Score (bit) 42.0
E-value 0.021
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912431|Adiantum capillus-veneris mRNA, clone:
YMU001_000018_H11.
(540 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8NJA7|A8NJA7_COPC7 Predicted protein OS=Coprinopsis cinerea ... 42 0.021
tr|A8N8J9|A8N8J9_COPC7 Putative uncharacterized protein OS=Copri... 42 0.021
tr|A5C062|A5C062_VITVI Putative uncharacterized protein OS=Vitis... 41 0.046
tr|A5C3V8|A5C3V8_VITVI Putative uncharacterized protein OS=Vitis... 39 0.14
tr|A5AFC7|A5AFC7_VITVI Putative uncharacterized protein OS=Vitis... 39 0.18
tr|Q2R8K8|Q2R8K8_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.23
tr|A5B066|A5B066_VITVI Putative uncharacterized protein OS=Vitis... 39 0.23
tr|Q8S5F9|Q8S5F9_ORYSA Putative uncharacterized protein OSJNBb00... 38 0.39
tr|Q8LM79|Q8LM79_ORYSJ Putative uncharacterized protein OSJNAa00... 38 0.39
tr|Q53KJ4|Q53KJ4_ORYSJ Transposable element protein, putative, R... 38 0.39
tr|Q33A54|Q33A54_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.39
tr|A5C5I1|A5C5I1_VITVI Putative uncharacterized protein OS=Vitis... 38 0.39
tr|A5AEN6|A5AEN6_VITVI Putative uncharacterized protein OS=Vitis... 38 0.39
tr|Q7QGM7|Q7QGM7_ANOGA AGAP010825-PA (Fragment) OS=Anopheles gam... 37 0.50
tr|A5CAV0|A5CAV0_VITVI Putative uncharacterized protein OS=Vitis... 37 0.51
tr|A9S6S4|A9S6S4_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.67
tr|A7QK21|A7QK21_VITVI Chromosome chr16 scaffold_110, whole geno... 37 0.67
tr|A5BD94|A5BD94_VITVI Putative uncharacterized protein OS=Vitis... 37 0.67
tr|Q8S6X7|Q8S6X7_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 36 1.1
tr|Q7XG75|Q7XG75_ORYSJ Zinc knuckle family protein OS=Oryza sati... 36 1.1
tr|A8PDI4|A8PDI4_COPC7 Putative uncharacterized protein OS=Copri... 36 1.1
tr|A9SY35|A9SY35_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.5
tr|A5BUI8|A5BUI8_VITVI Putative uncharacterized protein OS=Vitis... 36 1.5
tr|Q7XRT2|Q7XRT2_ORYSJ OSJNBa0042F21.11 protein OS=Oryza sativa ... 35 2.0
tr|A7QSF7|A7QSF7_VITVI Chromosome chr12 scaffold_159, whole geno... 35 2.0
tr|A5BRI5|A5BRI5_VITVI Putative uncharacterized protein OS=Vitis... 35 2.0
tr|A5C5K2|A5C5K2_VITVI Putative uncharacterized protein OS=Vitis... 35 2.6
tr|A5BJ10|A5BJ10_VITVI Putative uncharacterized protein OS=Vitis... 35 2.6
tr|A5B295|A5B295_VITVI Putative uncharacterized protein OS=Vitis... 35 2.6
tr|A5AQG7|A5AQG7_VITVI Putative uncharacterized protein OS=Vitis... 35 2.6

>tr|A8NJA7|A8NJA7_COPC7 Predicted protein OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_13172 PE=4
SV=1
Length = 536

Score = 42.0 bits (97), Expect = 0.021
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Frame = +1

Query: 37 DPARESLRVLSLNELPDIRPTVDAWDKRKC-----------IRETYIDGGAQVCVITQTC 183
DP + ++ L NE P RP V A + I E+ +D G+Q+C +++
Sbjct: 347 DPVEQYVQSLPENEEP--RPIVVARESLPLRAIYPEINSSGIEESLLDPGSQICSMSEEV 404

Query: 184 VSKLELNMVKNSGFRKKLVNQSKVKCLGVIRDLEVDVFDVKALVNCHVMPTGIGAFSLIL 363
+ ++ + + NQS K LG+ R++ + + A + HV+P A+ ++L
Sbjct: 405 AKEKNISYDPSITVFLQSANQSLAKTLGLARNVPFKIGNTIAYLQLHVIPK--VAYKVLL 462

Query: 364 GRP 372
GRP
Sbjct: 463 GRP 465


>tr|A8N8J9|A8N8J9_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_04046 PE=4 SV=1
Length = 923

Score = 42.0 bits (97), Expect = 0.021
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Frame = +1

Query: 37 DPARESLRVLSLNELPDIRPTVDAWDKRKC-----------IRETYIDGGAQVCVITQTC 183
DP + ++ L NE P RP V A + I E+ +D G+Q+C +++
Sbjct: 78 DPVEQYVQSLPENEEP--RPIVVARESLPLRAIYPEINSSGIEESLLDPGSQICSMSEEV 135

Query: 184 VSKLELNMVKNSGFRKKLVNQSKVKCLGVIRDLEVDVFDVKALVNCHVMPTGIGAFSLIL 363
+ ++ + + NQS K LG+ R++ + + A + HV+P A+ ++L
Sbjct: 136 AKEKNISYDPSITVFLQSANQSLAKTLGLARNVPFKIGNTIAYLQLHVIPK--VAYKVLL 193

Query: 364 GRP 372
GRP
Sbjct: 194 GRP 196


>tr|A5C062|A5C062_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_029494 PE=4 SV=1
Length = 1720

Score = 40.8 bits (94), Expect = 0.046
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Frame = +1

Query: 94 PTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELNMVKNSGFRKKLVNQSKVKCLGVI 273
PT+ C+ + +D GA V ++ + +L L +K + L N+S +G+I
Sbjct: 639 PTISVNIGGTCVEKALLDLGASVNLLPYSVYKQLGLRRLKPTSITLSLANRSVKIPMGII 698

Query: 274 RD--LEVDVFDVK---ALVNCHVMPTGIGAFSLILGRP*LQATKAV 396
D ++VD F +++ + TG S+ILGRP L + A+
Sbjct: 699 EDVLVQVDKFYYSVDFVVLDTDPVVTGTNYVSIILGRPFLATSNAI 744


>tr|A5C3V8|A5C3V8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_027189 PE=4 SV=1
Length = 1333

Score = 39.3 bits (90), Expect = 0.14
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Frame = +1

Query: 94 PTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELNMVKNSGFRKKLVNQSKVKCLGVI 273
PT+ C+ + +D GA V ++ + KL L +K + L ++S G+I
Sbjct: 346 PTISVMIGGTCVEKALLDLGASVNLLPYSVYKKLGLGELKPTSITLSLADRSVKIPRGMI 405

Query: 274 RDLEVDVFDVK-----ALVNCHVMPTGIGAFSLILGRP*LQATKAV*D-RGHGTITPEV 432
D+ V V ++N + G +ILGRP L + A+ + R G + P++
Sbjct: 406 EDVLVQVHKFYYPMDFVVLNTDPVAKGTNCVPIILGRPFLATSDAIINCRNGGYLNPQI 464


>tr|A5AFC7|A5AFC7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_000409 PE=4 SV=1
Length = 1717

Score = 38.9 bits (89), Expect = 0.18
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Frame = +1

Query: 118 RKCIRETYIDGGAQVCVITQTCVSKLELNMVKNSGFRKKLVNQSKVKCLGVIRDLEVDVF 297
+ C+ + +D GA V ++ + KL L +K + L ++S G+I D+ V V
Sbjct: 444 KTCVGKALLDFGASVNLLPYSVYKKLGLGELKPTSITLSLADRSMKIPRGMIEDVLVQVD 503

Query: 298 DVKALVNCHVMPTGIGAFS-----LILGRP*LQATKAV*DRGHGTI 420
+V+ V+ T + A +ILGRP L + + + G+G +
Sbjct: 504 KFYYIVDFVVLDTNLVAIGTNCILIILGRPFLATSNTIINCGNGVM 549


>tr|Q2R8K8|Q2R8K8_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=LOC_Os11g11840 PE=4 SV=1
Length = 491

Score = 38.5 bits (88), Expect = 0.23
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Frame = +1

Query: 13 KYVVELMKD----PARESLRV------LSLNELPDIR-----PTVDAWDKRKCIRETYID 147
+Y+ +++K+ P E +++ + L++LP+ + PT+ + + + D
Sbjct: 238 RYLKDILKNKRPLPTTEVVKLTEHYSNIILHKLPEKKKDPGCPTITCSIEAQQFDQALCD 297

Query: 148 GGAQVCVITQTCVSKLELNMVKNSGFRKKLVNQSKVKCLGVIRDLEVDVFDVKALVNCHV 327
GA V V+ + KL ++ + R +L N S G+ D+ V + D V+ V
Sbjct: 298 LGASVSVMPKDVFDKLNFTVLTPTPMRLQLANSSVRYPAGIAEDVPVKIRDFFIPVDFVV 357

Query: 328 MPTGIGAFS-LILGRP*LQATKAV*DRGHGTI 420
+ G LILGRP L A D G G+I
Sbjct: 358 LDMDTGKEKPLILGRPFLSTVGANIDVGTGSI 389


>tr|A5B066|A5B066_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013957 PE=4 SV=1
Length = 1229

Score = 38.5 bits (88), Expect = 0.23
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1

Query: 94 PTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELNMVKNSGFRKKLVNQSKVKCLGVI 273
PT+ + K + + +D GA V ++ + +L L +K + L ++S GVI
Sbjct: 178 PTISVMIEGKVVEKALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSVKIPRGVI 237

Query: 274 RDLEVDVFDVKALVNCHVMPTG-----IGAFSLILGRP*LQATKAV 396
D+ V V + LVN V+ T +ILGRP L + A+
Sbjct: 238 EDVLVQVDNFYYLVNFVVLDTDPIVKEANFVPIILGRPFLATSNAI 283


>tr|Q8S5F9|Q8S5F9_ORYSA Putative uncharacterized protein
OSJNBb0047B19.5 OS=Oryza sativa GN=OSJNBb0047B19.5 PE=4
SV=1
Length = 276

Score = 37.7 bits (86), Expect = 0.39
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Frame = +1

Query: 40 PARESLRVLSLNELPDIR-----PTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELN 204
P E + L++LP+ + PT+ + + D GA V V+ + KL
Sbjct: 119 PTTEHCSNVILHKLPEKKKDPRCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFT 178

Query: 205 MVKNSGFRKKLVNQSKVKCLGVIRDLEVDVFDVKALVNCHVMPTGIGA-FSLILGRP*LQ 381
++ + R +L + S +G+ D+ V ++D V+ V+ G SLILG P L
Sbjct: 179 VLAPTPMRLQLADSSVHCPVGIEEDVPVKIWDFFIPVDFVVLDMDTGKETSLILGHPFLS 238

Query: 382 ATKAV*DRGHGTI 420
A D G G+I
Sbjct: 239 TAGANIDVGMGSI 251


>tr|Q8LM79|Q8LM79_ORYSJ Putative uncharacterized protein
OSJNAa0082N11.11 OS=Oryza sativa subsp. japonica
GN=OSJNAa0082N11.11 PE=4 SV=1
Length = 322

Score = 37.7 bits (86), Expect = 0.39
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Frame = +1

Query: 40 PARESLRVLSLNELPDIR-----PTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELN 204
P E + L++LP+ + PT+ + + D GA V V+ + KL
Sbjct: 165 PTTEHCSNVILHKLPEKKKDPRCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFT 224

Query: 205 MVKNSGFRKKLVNQSKVKCLGVIRDLEVDVFDVKALVNCHVMPTGIGA-FSLILGRP*LQ 381
++ + R +L + S +G+ D+ V ++D V+ V+ G SLILG P L
Sbjct: 225 VLAPTPMRLQLADSSVHCPVGIEEDVPVKIWDFFIPVDFVVLDMDTGKETSLILGHPFLS 284

Query: 382 ATKAV*DRGHGTI 420
A D G G+I
Sbjct: 285 TAGANIDVGMGSI 297


>tr|Q53KJ4|Q53KJ4_ORYSJ Transposable element protein, putative,
Retrotrans_gag OS=Oryza sativa subsp. japonica
GN=LOC_Os11g26000 PE=4 SV=1
Length = 689

Score = 37.7 bits (86), Expect = 0.39
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = +1

Query: 70 LNELPDIR-----PTVDAWDKRKCIRETYIDGGAQVCVITQTCVSKLELNMVKNSGFRKK 234
L++LP+ + PT+ + + + D GA V V+ + KL+ ++ + R +
Sbjct: 449 LHKLPEKKKYPGCPTITCSIRAQQFDQALCDLGASVSVMPKDVFDKLKFTVLAPTPMRLQ 508

Query: 235 LVNQSKVKCLGVIRDLEVDVFDVKALVNCHVMPTGIGAFS-LILGRP*LQATKAV*DRGH 411
L + S G+ D+ V + D V+ V+ G + LILGRP L A D G
Sbjct: 509 LADSSVRYPAGIAEDVPVKIRDFFTPVDFVVLDMDTGKETPLILGRPFLSTGGANIDMGT 568

Query: 412 GTI 420
G+I
Sbjct: 569 GSI 571