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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912435
Clone id YMU001_000019_E05
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCGAACAGTCTCTTCGTTCGAGAGATGGCCTGGATTTTGGGAGGGCATTGCCAGCTTCC
TTGGATGATAAATAGCTATCATATTTGCCTCCTATGGACCGCTTCGGCCTGCATCCGACG
GGACAGACATCCTCCATGCATTGGAGGATTTATCATTGTAGATTCACTGGCTCAATACTC
TGAAGGCAGATAAGTTGGCTTATGTCAATGCCAACCTTCGAGGCTTGGAGAAGGTTGGAG
GATTAAACAGTGGAGGTACAGTGAGCTCGACAATAAAACAGGTCGACCATAAAAAAGTCG
TAGTGGAGGTTGCGGACATCTCGAAGCTTCAGCCACGCACTACAGAGGATGATGTCTATG
ACTTCATTTGAGAGTACATGATGCGCTTCGCTCGACAGACTTGCTCTACTATACGATGTC
G
■■Homology search results ■■ -
sp_hit_id P66713
Definition sp|P66713|RPOA_XYLFT DNA-directed RNA polymerase subunit alpha OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Align length 39
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912435|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_E05.
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P66713|RPOA_XYLFT DNA-directed RNA polymerase subunit alpha O...    32   1.3  
sp|P66712|RPOA_XYLFA DNA-directed RNA polymerase subunit alpha O...    32   1.3  
sp|Q64434|PTK6_MOUSE Tyrosine-protein kinase 6 OS=Mus musculus G...    30   3.9  
sp|Q5GWV9|RPOA_XANOR DNA-directed RNA polymerase subunit alpha O...    30   4.9  
sp|Q2P009|RPOA_XANOM DNA-directed RNA polymerase subunit alpha O...    30   4.9  
sp|P0A0Y1|RPOA_XANCP DNA-directed RNA polymerase subunit alpha O...    30   4.9  
sp|Q4URG3|RPOA_XANC8 DNA-directed RNA polymerase subunit alpha O...    30   4.9  
sp|Q3BWV9|RPOA_XANC5 DNA-directed RNA polymerase subunit alpha O...    30   4.9  
sp|P0A0Y2|RPOA_XANAC DNA-directed RNA polymerase subunit alpha O...    30   4.9  
sp|Q02280|KCNAE_DROME Potassium voltage-gated channel protein ea...    29   6.4  
sp|Q58DK4|DHAK_BOVIN Dihydroxyacetone kinase OS=Bos taurus GN=DA...    29   6.6  
sp|A5UNX8|GGR_METS3 Digeranylgeranylglycerophospholipid reductas...    29   8.4  
sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2       29   8.6  

>sp|P66713|RPOA_XYLFT DNA-directed RNA polymerase subunit alpha
           OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
           GN=rpoA PE=3 SV=1
          Length = 332

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G ++PAS G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GTVKPASSGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|P66712|RPOA_XYLFA DNA-directed RNA polymerase subunit alpha
           OS=Xylella fastidiosa GN=rpoA PE=3 SV=1
          Length = 332

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G ++PAS G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GTVKPASSGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|Q64434|PTK6_MOUSE Tyrosine-protein kinase 6 OS=Mus musculus
           GN=Ptk6 PE=1 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 192 YLPSEY*ASESTMINPPMHGGCLSRRMQAEAVHRRQ 85
           Y+P  Y A + T+ + P   GC+SR   +EA+HR Q
Sbjct: 61  YVPHNYLAEKETVESEPWFFGCISR---SEAMHRLQ 93


>sp|Q5GWV9|RPOA_XANOR DNA-directed RNA polymerase subunit alpha
           OS=Xanthomonas oryzae pv. oryzae GN=rpoA PE=3 SV=1
          Length = 332

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G  +PA+ G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GAAKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|Q2P009|RPOA_XANOM DNA-directed RNA polymerase subunit alpha
           OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
           GN=rpoA PE=3 SV=1
          Length = 332

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G  +PA+ G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GAAKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|P0A0Y1|RPOA_XANCP DNA-directed RNA polymerase subunit alpha
           OS=Xanthomonas campestris pv. campestris GN=rpoA PE=1
           SV=2
          Length = 332

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G  +PA+ G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GAAKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|Q4URG3|RPOA_XANC8 DNA-directed RNA polymerase subunit alpha
           OS=Xanthomonas campestris pv. campestris (strain 8004)
           GN=rpoA PE=3 SV=1
          Length = 332

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G  +PA+ G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GAAKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|Q3BWV9|RPOA_XANC5 DNA-directed RNA polymerase subunit alpha
           OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
           GN=rpoA PE=3 SV=1
          Length = 332

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G  +PA+ G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GAAKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|P0A0Y2|RPOA_XANAC DNA-directed RNA polymerase subunit alpha
           OS=Xanthomonas axonopodis pv. citri GN=rpoA PE=3 SV=2
          Length = 332

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 96  GPLRPASDGTD--ILHALEDLSL*IHWLNTLKADKLAYV 206
           G  +PA+ G D  +L  ++DL L +   N LKA+ + Y+
Sbjct: 239 GAAKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYI 277


>sp|Q02280|KCNAE_DROME Potassium voltage-gated channel protein eag
           OS=Drosophila melanogaster GN=eag PE=1 SV=2
          Length = 1174

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 237 GGLNSGGTVSSTIKQVDHKKVVVEVADISKLQPRTTEDDVYD 362
           GG  SGGTV + + + D    +     I     R T  D YD
Sbjct: 837 GGPGSGGTVVAIVTKADRNLALERERQIEMASSRATTSDTYD 878
tr_hit_id Q0CPU2
Definition tr|Q0CPU2|Q0CPU2_ASPTN Putative uncharacterized protein OS=Aspergillus terreus (strain NIH 2624)
Align length 56
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912435|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_E05.
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0CPU2|Q0CPU2_ASPTN Putative uncharacterized protein OS=Asper...    33   5.4  

>tr|Q0CPU2|Q0CPU2_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_04292
           PE=4 SV=1
          Length = 345

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 197 GLCQCQPSRLGEGWRIKQWRY---SELDNKTGRP*KSRSGGCGHLEASATHYRG*C 355
           G C C   RLG G+ I++W +   S L N  G P     G     E+S   YR  C
Sbjct: 221 GTCACTSCRLGSGFPIQEWAFIPKSNLFNADGSPLAFGVGTMQQYESSPEVYREFC 276