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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912451
Clone id YMU001_000019_F10
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGAAAAATGGACAACGGTACCAAACTCAGGTGGCCATTAAGAAAAGTTATGTACAAGGC
CCTTTCCATTTTGCAGTGGTCCTCATTGCTCAGAAACTTAGTTTACAAGGCTATAATACA
CAATTTTGGCTAGCTTGGTTTGCCCCAGATGATCTGGCTTTGTTACATTTACATTGTTTT
ACCTTGAAAGGTGAAGGATTGGATATAAAATTGCCAACCCACTTTTTGCAGCTCACATTC
TCATTCCACTGCATTACACTGCTTTTGTGCCTTCATTCCAAAAGCATGGATGACATTTTG
ACAACTATGGGCTCGGGTGCTTTCATGCCGCTCTTGGACTCCTTTGCCTGATGTCTCCGA
ACGAGAAATCCTCTGACTGCGGCTTGTATTTTCATCGTAGCCCCCGCTTTGTAAATCTTT
TGTATTTGCTTCTCTCTTTCAATCCTAACAGCTAGTTCCAAGCCCCTTGAACCAATTTTG
TAAAGAGTTAAAGTTTCCAGAAGCTCTCTAAAAGGGACCCCTTTTCTTTCAACATGAAGG
GTTAACACTTCCCACTCAATCCTTGCATACCATTGTGGAGCTGCGTTGTG
■■Homology search results ■■ -
sp_hit_id A2SKA3
Definition sp|A2SKA3|Y3039_METPP UPF0234 protein Mpe_A3039 OS=Methylibium petroleiphilum (strain PM1)
Align length 76
Score (bit) 36.6
E-value 0.096
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912451|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_F10.
         (590 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2SKA3|Y3039_METPP UPF0234 protein Mpe_A3039 OS=Methylibium p...    37   0.096
sp|P34298|DUOXA_CAEEL DUOXA-like protein C06E1.3 OS=Caenorhabdit...    33   1.4  
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mu...    32   3.1  
sp|Q6E0W6|L_MMV Large structural protein OS=Maize mosaic virus G...    31   4.0  
sp|O52200|PRIM_MYCS2 DNA primase OS=Mycobacterium smegmatis GN=d...    31   5.3  
sp|Q5GA85|L_TAVCV Large structural protein OS=Taro vein chlorosi...    31   5.3  
sp|Q86VI3|IQGA3_HUMAN Ras GTPase-activating-like protein IQGAP3 ...    31   5.3  
sp|O66442|ARGD_AQUAE Acetylornithine aminotransferase OS=Aquifex...    31   5.3  
sp|Q5PHN5|RSMF_SALPA Ribosomal RNA small subunit methyltransfera...    30   6.9  
sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thalia...    30   6.9  
sp|Q569U0|MYO19_XENLA Myosin-XIX OS=Xenopus laevis GN=myo19 PE=2...    30   9.0  

>sp|A2SKA3|Y3039_METPP UPF0234 protein Mpe_A3039 OS=Methylibium
           petroleiphilum (strain PM1) GN=Mpe_A3039 PE=3 SV=1
          Length = 162

 Score = 36.6 bits (83), Expect = 0.096
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
 Frame = -1

Query: 551 EVLTLHVERKGVPFRELLETLTLYKIGSRGLELAVRI------EREKQIQKIYKAGATMK 390
           ++LTL + ++ V  R L  +  + KIG   ++  +++      E  K+IQ++ KA + MK
Sbjct: 61  DILTLKLTKRSVDARFLDSSAKIEKIGGDKVKQVLKVKEGIDSETAKKIQQLIKA-SKMK 119

Query: 389 IQAAVRGFLVRRHQAK 342
           +QAA++G  VR   AK
Sbjct: 120 VQAAIQGDAVRVTGAK 135


>sp|P34298|DUOXA_CAEEL DUOXA-like protein C06E1.3 OS=Caenorhabditis
           elegans GN=C06E1.3 PE=2 SV=2
          Length = 397

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -3

Query: 414 LQSGGYDENTSRSQRISRSETSGKGVQERHESTRAHSCQNVIHAFGMKAQKQCNAVE*EC 235
           +Q G Y  NT+ S R     +S K        +R  +CQ+   +  +++Q     V  E 
Sbjct: 319 VQIGAYGTNTTNSSRDKNDISSDKTAGSSGFQSRTSTCQSSASSASLRSQSSIETVHDEA 378

Query: 234 ELQKVGWQF 208
           EL++    F
Sbjct: 379 ELERTHVHF 387


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus
           musculus GN=Ddx50 PE=2 SV=1
          Length = 734

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 432 EANTKDLQSGGYDENTSRSQRISRSETSGKGVQERHESTRAHSCQNVIHAFGMKAQ 265
           ++  KDL +G  DE   RS+R+S SE S K   +  E+      +     F +  +
Sbjct: 89  KSRRKDLPNGDVDEYEKRSKRVSSSENSHKSSDKAEETLTREQKEGAFSNFSISEE 144


>sp|Q6E0W6|L_MMV Large structural protein OS=Maize mosaic virus GN=L
            PE=3 SV=1
          Length = 1922

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
 Frame = +2

Query: 71   LQWSSLLRNLVYKAIIHNFG*LGLPQMIWL-------CYIYIVLP 184
            + + S+L NL+Y+A+++     GLP+M+W        C I IV P
Sbjct: 1270 IHFQSVLINLLYRAMVYRGSLPGLPEMVWYSKERCSHCIIDIVEP 1314


>sp|O52200|PRIM_MYCS2 DNA primase OS=Mycobacterium smegmatis GN=dnaG
           PE=3 SV=1
          Length = 636

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 569 YARIEWEVLTLHVERKGVPFRELLETLTLYKIGSRG 462
           YA   W+ LT H+ RKG  F+E LE   L + G RG
Sbjct: 165 YAPSGWDKLTKHLLRKGFEFKE-LEAAGLSREGKRG 199


>sp|Q5GA85|L_TAVCV Large structural protein OS=Taro vein chlorosis
            virus GN=L PE=3 SV=1
          Length = 1928

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 71   LQWSSLLRNLVYKAIIHNFG*LGLPQMIW 157
            + + S+L NL+Y+A+++     GLP+MIW
Sbjct: 1271 IHFQSVLINLLYRAMVYRGSVPGLPEMIW 1299


>sp|Q86VI3|IQGA3_HUMAN Ras GTPase-activating-like protein IQGAP3
           OS=Homo sapiens GN=IQGAP3 PE=1 SV=1
          Length = 1631

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 422 QKIYKA--GATMKIQAAVRGFLVRRHQAKESKSGMKAPEPIVVKMSSMLLE*RHKSSVMQ 249
           Q+++KA  G  +++QA +RGFLVR+  A+ S   ++   P V+K+ +     R +   ++
Sbjct: 724 QQLWKANVGFVIQLQARLRGFLVRQKFAEHSHF-LRTWLPAVIKIQAHWRGYRQRKIYLE 782

Query: 248 W 246
           W
Sbjct: 783 W 783


>sp|O66442|ARGD_AQUAE Acetylornithine aminotransferase OS=Aquifex
           aeolicus GN=argD PE=1 SV=1
          Length = 376

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 557 EWEVLTLHVERKGVPFRELLETLTLYKIGSRGLELAVRIERE 432
           E E L  HV   G  F+E L+ L   K+  RGL L + +ERE
Sbjct: 288 EVEKLLPHVREVGNYFKEKLKELGKGKVKGRGLMLGLELERE 329


>sp|Q5PHN5|RSMF_SALPA Ribosomal RNA small subunit methyltransferase
           F OS=Salmonella paratyphi A GN=rsmF PE=3 SV=1
          Length = 479

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 369 ISRSETSGKGVQERHESTRAHSCQNVIHAFGMKAQK 262
           I  +E+  KG + +HE+T A +C    HAF + AQ+
Sbjct: 385 IKLAESHNKGYRWQHEATIALACPTHAHAFELSAQE 420


>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana
           GN=IQD32 PE=1 SV=2
          Length = 794

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 455 LAVRIEREKQIQKIYKAGATMKIQAAVRGFLVRRHQAKESK 333
           + VR E ++++ +       + IQAAVRGFL RR   +  K
Sbjct: 199 IIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKK 239
tr_hit_id A9TL69
Definition tr|A9TL69|A9TL69_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 72
Score (bit) 85.1
E-value 3.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912451|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_F10.
         (590 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TL69|A9TL69_PHYPA Predicted protein OS=Physcomitrella paten...    85   3e-15
tr|A4RQQ5|A4RQQ5_OSTLU VIC family transporter: calcium ion chann...    64   8e-09
tr|Q01GU7|Q01GU7_OSTTA Sodium channel (ISS) OS=Ostreococcus taur...    61   4e-08
tr|A4HTB9|A4HTB9_LEIIN Putative uncharacterized protein OS=Leish...    36   1.9  
tr|Q2TXH6|Q2TXH6_ASPOR Predicted protein OS=Aspergillus oryzae G...    35   2.4  
tr|B8NVM6|B8NVM6_ASPFL Putative uncharacterized protein OS=Asper...    35   2.4  
tr|Q0PAQ6|Q0PAQ6_CAMJE Putative acyltransferase family protein O...    35   3.2  
tr|A1VYX2|A1VYX2_CAMJJ Alginate O-acetyltransferase AlgI OS=Camp...    35   3.2  
tr|B1VGH0|B1VGH0_CORU7 DNA primase OS=Corynebacterium urealyticu...    35   4.1  
tr|Q8FNH5|Q8FNH5_COREF Putative DNA primase DnaG OS=Corynebacter...    34   5.4  
tr|A8XT19|A8XT19_CAEBR Putative uncharacterized protein OS=Caeno...    34   5.4  
tr|Q8NND6|Q8NND6_CORGL DNA primase (Bacterial type) OS=Corynebac...    33   9.2  
tr|Q4W584|Q4W584_NEIMB Polysialic acid capsule biosynthesis prot...    33   9.2  
tr|A4QFX6|A4QFX6_CORGB Putative uncharacterized protein OS=Coryn...    33   9.2  
tr|Q83TU5|Q83TU5_NEIME Sialyltransferase (SiaD) (Fragment) OS=Ne...    33   9.2  
tr|Q51281|Q51281_NEIME SiaD protein OS=Neisseria meningitidis GN...    33   9.2  
tr|B4M5B3|B4M5B3_DROVI GJ11084 OS=Drosophila virilis GN=GJ11084 ...    33   9.2  

>tr|A9TL69|A9TL69_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_94200 PE=4 SV=1
          Length = 1226

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 41/72 (56%), Positives = 56/72 (77%)
 Frame = -1

Query: 569  YARIEWEVLTLHVERKGVPFRELLETLTLYKIGSRGLELAVRIEREKQIQKIYKAGATMK 390
            Y  I++EV   HV  KG+PFR  LETL LYKIGS+GL L++RIEREKQ+++I++ GA + 
Sbjct: 1109 YRFIQYEVYNFHVYGKGIPFRNFLETLVLYKIGSQGLILSLRIEREKQLKQIFRNGAAIV 1168

Query: 389  IQAAVRGFLVRR 354
            IQ+ +R FLV+R
Sbjct: 1169 IQSHIRRFLVQR 1180


>tr|A4RQQ5|A4RQQ5_OSTLU VIC family transporter: calcium ion channel
            OS=Ostreococcus lucimarinus (strain CCE9901)
            GN=OSTLU_13647 PE=3 SV=1
          Length = 1546

 Score = 63.5 bits (153), Expect = 8e-09
 Identities = 30/77 (38%), Positives = 49/77 (63%)
 Frame = -1

Query: 584  AAPQWYARIEWEVLTLHVERKGVPFRELLETLTLYKIGSRGLELAVRIEREKQIQKIYKA 405
            AA  W  RI +E +++HV  +G+PF  LLE+L   K+G+  L LA R+ R+K+++ +   
Sbjct: 1455 AAALWRRRIMYESISIHVPGRGIPFTPLLESLLATKLGAAALSLAERLARQKRLRDVEAW 1514

Query: 404  GATMKIQAAVRGFLVRR 354
            GA +  Q+ +RG + RR
Sbjct: 1515 GAAVVAQSYIRGHITRR 1531


>tr|Q01GU7|Q01GU7_OSTTA Sodium channel (ISS) OS=Ostreococcus tauri
            GN=Ot01g01360 PE=3 SV=1
          Length = 1485

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 34/90 (37%), Positives = 54/90 (60%)
 Frame = -1

Query: 587  NAAPQWYARIEWEVLTLHVERKGVPFRELLETLTLYKIGSRGLELAVRIEREKQIQKIYK 408
            +AA  W  RI +E + +    +GVPF +LLE+L   K+G+  L L  R+ R ++++ I  
Sbjct: 1374 HAASLWRRRIAYEAIVVREPGRGVPFTQLLESLLATKLGASALALEARLTRRRRLRDIDH 1433

Query: 407  AGATMKIQAAVRGFLVRRHQAKESKSGMKA 318
              A +  QA VRGF+VRR + +  +S +KA
Sbjct: 1434 WAAAVVTQAHVRGFIVRR-RLRIERSRLKA 1462


>tr|A4HTB9|A4HTB9_LEIIN Putative uncharacterized protein OS=Leishmania
            infantum GN=LinJ07.1000 PE=4 SV=1
          Length = 2034

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 41   RKVMYKALSILQWSSLLRNLVYKAIIHNFG*LGLPQMIWLCYIYIVLP*KVKD 199
            ++V+++A      SS LR   + A+ H  G   LP M+W   +Y +LP  +KD
Sbjct: 1432 QEVVWRASGAAGVSSALRYFQHAAVAHRVGRAALPVMMWSWQLYSLLPVVIKD 1484


>tr|Q2TXH6|Q2TXH6_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090010000140 PE=4 SV=1
          Length = 284

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 272 RH-KSSVMQWNENVSCK-KWVGNFISNPSPFKVKQCKCNKARSSGANQASQNCVL*PCKL 99
           RH K     WN +  CK KW GN+ SN + +   +CKC K      N+A ++C   P   
Sbjct: 108 RHCKPGDWDWN-SCRCKGKWCGNYDSNCNNWSWNKCKCKKV----CNEADRHCK--PGDW 160

Query: 98  SF*AMRTTAKWKG 60
            + + R   KW G
Sbjct: 161 DWNSCRCKGKWCG 173



 Score = 33.9 bits (76), Expect = 7.1
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -1

Query: 272 RH-KSSVMQWNENVSCK-KWVGNFISNPSPFKVKQCKCNKARSSGANQASQNCVL*PCKL 99
           RH K     WN +  CK KW GN+ SN + +   +CKC K      N+A  +C   P   
Sbjct: 153 RHCKPGDWDWN-SCRCKGKWCGNYDSNCNNWSWNKCKCKKV----CNEADCHCK--PSDC 205

Query: 98  SF*AMRTTAKWKG 60
            + + R   +W G
Sbjct: 206 DWNSCRCKGRWCG 218


>tr|B8NVM6|B8NVM6_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_117130 PE=4 SV=1
          Length = 284

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 272 RH-KSSVMQWNENVSCK-KWVGNFISNPSPFKVKQCKCNKARSSGANQASQNCVL*PCKL 99
           RH K     WN +  CK KW GN+ SN + +   +CKC K      N+A ++C   P   
Sbjct: 108 RHCKPGDWDWN-SCRCKGKWCGNYDSNCNNWSWNKCKCKKV----CNEADRHCK--PGDW 160

Query: 98  SF*AMRTTAKWKG 60
            + + R   KW G
Sbjct: 161 DWNSCRCKGKWCG 173



 Score = 35.0 bits (79), Expect = 3.2
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 272 RH-KSSVMQWNENVSCK-KWVGNFISNPSPFKVKQCKCNKARSSGANQASQNCVL*PCKL 99
           RH K     WN +  CK KW GN+ SN + +   +CKC K      N+A ++C   P   
Sbjct: 153 RHCKPGDWDWN-SCRCKGKWCGNYDSNCNNWSWNKCKCKKV----CNEADRHCK--PSDW 205

Query: 98  SF*AMRTTAKWKG 60
            + + R   +W G
Sbjct: 206 DWNSCRCKGRWCG 218


>tr|Q0PAQ6|Q0PAQ6_CAMJE Putative acyltransferase family protein
           OS=Campylobacter jejuni GN=Cj0611c PE=4 SV=1
          Length = 458

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 61  PFHFAVVLIAQKLSLQGY-NTQFWLAWFAPDDLALLHLHCFTLKGEGLDIKLPTHFLQLT 237
           P   A +LIA  LS   + NT  ++ W     + ++ +H  TL    L  K+P     LT
Sbjct: 298 PRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVFIHLLTLSKFSLQ-KIPALGRFLT 356

Query: 238 FSFHCITLLLCLHSKSMDDIL 300
           F F C T +   +SK+++D +
Sbjct: 357 FQFVCFTWIFFYYSKNLEDAI 377


>tr|A1VYX2|A1VYX2_CAMJJ Alginate O-acetyltransferase AlgI
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=algI PE=4 SV=1
          Length = 458

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 61  PFHFAVVLIAQKLSLQGY-NTQFWLAWFAPDDLALLHLHCFTLKGEGLDIKLPTHFLQLT 237
           P   A +LIA  LS   + NT  ++ W     + ++ +H  TL    L  K+P     LT
Sbjct: 298 PRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVFIHLLTLSKFSLQ-KIPALGRFLT 356

Query: 238 FSFHCITLLLCLHSKSMDDIL 300
           F F C T +   +SK+++D +
Sbjct: 357 FQFVCFTWIFFYYSKNLEDAI 377


>tr|B1VGH0|B1VGH0_CORU7 DNA primase OS=Corynebacterium urealyticum
           (strain ATCC 43042 / DSM 7109) GN=cu1317 PE=4 SV=1
          Length = 670

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -1

Query: 569 YARIEWEVLTLHVERKGVPFRELLETLTLYKIGSRG 462
           YA + W+ LT H+ RKG  F+E LE   L ++GS+G
Sbjct: 167 YAPLGWDTLTKHLLRKGFEFQE-LEAAGLSRMGSKG 201


>tr|Q8FNH5|Q8FNH5_COREF Putative DNA primase DnaG OS=Corynebacterium
           efficiens GN=CE2169 PE=4 SV=1
          Length = 645

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -1

Query: 569 YARIEWEVLTLHVERKGVPFRELLETLTLYKIGSRG 462
           YA   W+ LT H+ +KG  FRE LE   L K+G RG
Sbjct: 175 YAPAGWDTLTKHLLKKGFEFRE-LEAAGLSKMGRRG 209