NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912452
Clone id YMU001_000019_G09
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGGGCTGTGGTAGAAGTCTTTAGCATTGGGGATTGAGCAGTTCACTCAACAGGAAAGGT
TAGGTGTGGCAGGACATTATTGTTTTCAGCGAGCGGGTTTTGTGCGTCCTTTTGAGCAGT
GAGTGGTTGCGCTCGTAACGGGCTGTGGATTCCCCCATTGGATTTGGGGTTGTTTTGGTC
TTTTCGGACGAGAGACATTGCATTACAGGTTTTGCTTTTTGCAGGACTTCAAGAGCCAGG
TCGAGGGAGCCGAGGTGTGCCCTCTCACTCTCTTTGCATTGATCTTGACTACCCGCAGTG
GGTTGTGGATTCTCTGCCCAGTCGGAAGTCTTGGCTGTTTACTTTGGTATTCATTACGCC
GCCCTGCAAGGCCAAATATTGCAGGTTAGAGCAAGCGCTCTCCACGAGTTATGTATTGGA
GGCCGTCTAGTCTTAGTGGAGCCAGAGTGTGCTGAGTNTTTGAGGATATTACAGGTTCTT
TGTGTGGATCGCGAAACCCATATTTTGTATGCTAGTTGATGTACGAGCCATAGAGCTCCT
GATTCA
■■Homology search results ■■ -
sp_hit_id Q5NCY0
Definition sp|Q5NCY0|JMJD3_MOUSE Histone demethylase JMJD3 OS=Mus musculus
Align length 42
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912452|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G09.
         (546 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5NCY0|JMJD3_MOUSE Histone demethylase JMJD3 OS=Mus musculus ...    31   3.4  
sp|Q23883|NDUS2_DICDI NADH-ubiquinone oxidoreductase 49 kDa subu...    30   5.8  
sp|Q2LCR5|NDUS2_DICCI NADH-ubiquinone oxidoreductase 49 kDa subu...    30   5.8  
sp|A4TE23|LEUC_MYCGI 3-isopropylmalate dehydratase large subunit...    30   5.9  
sp|Q1BAQ4|LEUC_MYCSS 3-isopropylmalate dehydratase large subunit...    30   7.7  
sp|A1UEA8|LEUC_MYCSK 3-isopropylmalate dehydratase large subunit...    30   7.7  
sp|A3PXR2|LEUC_MYCSJ 3-isopropylmalate dehydratase large subunit...    30   7.7  
sp|Q51647|YISX_BURM1 Insertion element IS401 uncharacterized 12....    30   9.9  
sp|O94573|YGDG_SCHPO Uncharacterized transcriptional regulatory ...    30   9.9  
sp|Q96KW2|PO122_HUMAN POM121-like protein 2 OS=Homo sapiens GN=P...    30   9.9  
sp|A0LLE6|NHAA_SYNFM Na(+)/H(+) antiporter nhaA OS=Syntrophobact...    30   9.9  
sp|Q5AW24|IML1_EMENI Vacuolar membrane-associated protein iml1 O...    30   9.9  

>sp|Q5NCY0|JMJD3_MOUSE Histone demethylase JMJD3 OS=Mus musculus
            GN=Jmjd3 PE=2 SV=1
          Length = 1641

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 275  KESERAHLGSLDLALEVLQ---KAKPVMQCLSSEKTKTTPNP 159
            KE  R  LG+LDL  E +Q   KA+P +  +S  KT T P P
Sbjct: 1009 KEKSRRVLGNLDLQSEEIQGREKARPDVGGVSKVKTPTAPAP 1050


>sp|Q23883|NDUS2_DICDI NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Dictyostelium discoideum GN=nad7 PE=3 SV=1
          Length = 406

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = -2

Query: 266 ERAHLGSLDLALEVLQKAKPVMQCLSSEKTKTTPNPMGEST 144
           ER +L SLD+ LE+ Q+AK V++ L SE T+   + M  +T
Sbjct: 93  ERLYLDSLDIELEIPQRAK-VIRVLFSEITRVLNHIMATTT 132


>sp|Q2LCR5|NDUS2_DICCI NADH-ubiquinone oxidoreductase 49 kDa subunit
           OS=Dictyostelium citrinum GN=nad7 PE=3 SV=1
          Length = 406

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = -2

Query: 266 ERAHLGSLDLALEVLQKAKPVMQCLSSEKTKTTPNPMGEST 144
           ER +L SLD+ LE+ Q+AK V++ L SE T+   + M  +T
Sbjct: 93  ERLYLDSLDIELEIPQRAK-VIRVLFSEITRVLNHIMATTT 132


>sp|A4TE23|LEUC_MYCGI 3-isopropylmalate dehydratase large subunit
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=leuC PE=3
           SV=1
          Length = 481

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 GFSAQSEVLAVYFGIHYAALQGQILQVRASALHELCIGGRLVL 435
           G SA+  +LAV   I     QG +++ R SA+  L + GR+ +
Sbjct: 187 GVSAKDVILAVIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTI 229


>sp|Q1BAQ4|LEUC_MYCSS 3-isopropylmalate dehydratase large subunit
           OS=Mycobacterium sp. (strain MCS) GN=leuC PE=3 SV=1
          Length = 481

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 GFSAQSEVLAVYFGIHYAALQGQILQVRASALHELCIGGRLVL 435
           G SA+  +LAV   I     QG +++ R SA+  L + GR+ +
Sbjct: 187 GVSAKDIILAVIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTI 229


>sp|A1UEA8|LEUC_MYCSK 3-isopropylmalate dehydratase large subunit
           OS=Mycobacterium sp. (strain KMS) GN=leuC PE=3 SV=1
          Length = 481

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 GFSAQSEVLAVYFGIHYAALQGQILQVRASALHELCIGGRLVL 435
           G SA+  +LAV   I     QG +++ R SA+  L + GR+ +
Sbjct: 187 GVSAKDIILAVIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTI 229


>sp|A3PXR2|LEUC_MYCSJ 3-isopropylmalate dehydratase large subunit
           OS=Mycobacterium sp. (strain JLS) GN=leuC PE=3 SV=1
          Length = 481

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 GFSAQSEVLAVYFGIHYAALQGQILQVRASALHELCIGGRLVL 435
           G SA+  +LAV   I     QG +++ R SA+  L + GR+ +
Sbjct: 187 GVSAKDIILAVIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTI 229


>sp|Q51647|YISX_BURM1 Insertion element IS401 uncharacterized 12.4
           kDa protein OS=Burkholderia multivorans (strain ATCC
           17616 / 249) GN=Bmul_5725.1 PE=3 SV=1
          Length = 107

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 323 DWAENPQPTAGSQDQCKESERAHLGSLDLALEVLQKAKPVMQCLSS 186
           DW +  +  +G +D    SER  L +L+  ++ L++A  +++  S+
Sbjct: 49  DWVKREEVDSGQRDGLSSSERERLKALEREVKELRRANEILKTASA 94


>sp|O94573|YGDG_SCHPO Uncharacterized transcriptional regulatory
           protein C1773.16c OS=Schizosaccharomyces pombe
           GN=SPBC1773.16c PE=2 SV=1
          Length = 595

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +3

Query: 156 HWIWGCFGLFGRETLHYRFCFLQDFKSQVEGAEVCPLTLFALILTTRSGLWILCPVGSLG 335
           H+   C  ++        + +L D    +EG+++C  T  A I   +  L +L P+    
Sbjct: 443 HFFTACVEIYLSYCNTLIYLYLAD--DSIEGSKICLSTARAAIDVIKGFLVVLDPISKNI 500

Query: 336 CLLWYSLRRPARP 374
           C LW  L  P  P
Sbjct: 501 CYLWLFLYCPFTP 513


>sp|Q96KW2|PO122_HUMAN POM121-like protein 2 OS=Homo sapiens
           GN=POM121L2 PE=1 SV=1
          Length = 971

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -3

Query: 244 STWLLKSCKKQNL*CNVSRP----KRPKQPQIQWGNPQPVTSATTHCSKGRTKPA 92
           + WL  +    NL   ++ P     RP  P  Q  NPQP   AT    +G ++PA
Sbjct: 672 TNWLASTPSISNLTPAITSPLGSSSRPPFPLSQGANPQPAFGATNGQKQGPSQPA 726
tr_hit_id Q5CFF9
Definition tr|Q5CFF9|Q5CFF9_CRYHO Putative uncharacterized protein OS=Cryptosporidium hominis
Align length 73
Score (bit) 34.3
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912452|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G09.
         (546 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5CFF9|Q5CFF9_CRYHO Putative uncharacterized protein OS=Crypt...    34   4.4  
tr|Q5AL64|Q5AL64_CANAL Putative uncharacterized protein OS=Candi...    34   4.4  
tr|A2QET4|A2QET4_ASPNC Contig An02c0390, complete genome OS=Aspe...    34   4.4  
tr|B7RLT4|B7RLT4_9RHOB Major facilitator superfamily protein OS=...    33   7.6  
tr|Q1JMB8|Q1JMB8_STRPC Cell surface protein OS=Streptococcus pyo...    33   9.8  
tr|Q1JCD7|Q1JCD7_STRPB Cell surface protein OS=Streptococcus pyo...    33   9.8  
tr|B6KUD4|B6KUD4_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.9  

>tr|Q5CFF9|Q5CFF9_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.50089 PE=4 SV=1
          Length = 668

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 354 MNTKVNSQDFRLGRESTTHCG*SRSMQRE*EGTPRLPRPGS*SPAKSKT-CNAMSLVRKD 178
           MNTK+N Q+ RL ++S++ C  S+S  R    +    +P S S ++SK+   + S  +  
Sbjct: 539 MNTKLNIQNSRLEKKSSSSCSKSKSRSRSRSKSRSRSKPRSKSRSRSKSHSRSRSKSKTR 598

Query: 177 QNNPKSNGGIHSP 139
             +  S   I SP
Sbjct: 599 SKSYSSRSSISSP 611


>tr|Q5AL64|Q5AL64_CANAL Putative uncharacterized protein OS=Candida
            albicans GN=CaO19.12379 PE=4 SV=1
          Length = 1209

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
 Frame = -3

Query: 385  PAIFGLAGRRNEYQSKQPRLPTGQRI--HNPLRVVKI----------NAKRVRGHTSAPS 242
            P+   + G+ N+   K P L +  ++  HN LRV KI            K ++     PS
Sbjct: 1108 PSYLKIGGKSNKKIKKLPELESSIKLTSHNMLRVSKILNYLVEKFANTTKEMKDKNLIPS 1167

Query: 241  TWLLKSCKKQNL 206
             WL+  CK Q L
Sbjct: 1168 DWLVLQCKGQEL 1179


>tr|A2QET4|A2QET4_ASPNC Contig An02c0390, complete genome
            OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
            GN=An02g12170 PE=4 SV=1
          Length = 1015

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = -3

Query: 382  AIFGLAGRRNEYQSKQPRLPTGQRIHNPLRVVKINAKRVRGHTSAPSTWLLKSCKKQNL* 203
            ++FG   ++NE + K P  PTG  +      ++  A+  +  T  PST    + KK+ + 
Sbjct: 765  SMFGTVKKKNEPEPKPPMKPTGSAVAAARAALEDKARAAQEQTIRPSTNGKPTLKKKPVP 824

Query: 202  CN--VSRPK-----RPKQPQIQWGNPQP 140
                V  PK     +P +P +Q   P+P
Sbjct: 825  ITVPVEAPKPAESPKPAEPAVQEKAPKP 852


>tr|B7RLT4|B7RLT4_9RHOB Major facilitator superfamily protein
           OS=Roseobacter sp. GAI101 GN=RGAI101_3682 PE=4 SV=1
          Length = 391

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
 Frame = +3

Query: 123 VVALVTGCGFPHWIWGCFGLFGRETLHYRFCFLQDFKSQVEGAEVC-------PLTLFAL 281
           +  ++ G G    +   + +F RE    RF  +    S + G   C       P+ + A 
Sbjct: 97  IAMVLIGIGCAPVLMAAYYIFAREYPPARFVVMA---SVMVGVGTCGNLVASYPMAIAAE 153

Query: 282 ILTTRSGLWILCPVGSLGCL-LWYSLRRPARP 374
            +  R+ LW LC + SL  L +W  +R P RP
Sbjct: 154 TIGWRASLWGLCAITSLTALGIWTVVRDPVRP 185


>tr|Q1JMB8|Q1JMB8_STRPC Cell surface protein OS=Streptococcus pyogenes
            serotype M12 (strain MGAS9429) GN=MGAS9429_Spy0706 PE=4
            SV=1
          Length = 1008

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -1

Query: 264  EGTPRLPRPGS*SPAKSKTCNAMSLVRKDQNNPKSNGGIHSPL 136
            E    LP+PG+ S   S + +A S  R  Q+NPK+N G HS +
Sbjct: 932  EAEQLLPKPGTHSEKSSSSESANSKDRALQSNPKTNRGRHSAI 974


>tr|Q1JCD7|Q1JCD7_STRPB Cell surface protein OS=Streptococcus pyogenes
            serotype M12 (strain MGAS2096) GN=MGAS2096_Spy0719 PE=4
            SV=1
          Length = 1008

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = -1

Query: 264  EGTPRLPRPGS*SPAKSKTCNAMSLVRKDQNNPKSNGGIHSPL 136
            E    LP+PG+ S   S + +A S  R  Q+NPK+N G HS +
Sbjct: 932  EAEQLLPKPGTHSEKSSSSESANSKDRALQSNPKTNRGRHSAI 974


>tr|B6KUD4|B6KUD4_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_080630 PE=4 SV=1
          Length = 3996

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 308  DSLPSRKSWLFTLVFITPPCKAKYCRLEQALSTSYVLE 421
            DSL   +SWL   +F+ PP  A Y R+ Q     Y+LE
Sbjct: 3194 DSLDGDRSWLRESLFMLPPSSAAYRRVSQESCCIYLLE 3231