BP912454
Clone id YMU001_000019_G01
Library
Length 580
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAGGTACTCCTGCACCCCAGATGGTGAAGGCAGTGGCACAGCTTATCATGTAAGGGGCAG
GTCAAAGAAAAGGAACAATGTAGCTAACAGGGGGCAAGAGTAGAAGTAAGAGCAAGGGGC
AATCTCAAGATATAAGTTGCTATCAATGTGGACGCAAAGGGCATAAAAAGCCTGATTGCA
AATTTTACAAGCAAGAGCTTGAGAGGAAGAAGCAGCACAGCGGGGTAAGAAGAAGAAGGA
TGCAAAAGATGCTAAAGGTGATGATGACACCTCCTCTTCTTCCAAGGATGTTGACAAGGC
AAATGTGGCCTCTAGTGTGGTCATAGAGGAAATTGTTGATGTGGACGAAGCATTTGTCGT
AGCTTCGAGTGTCTTTGATGATGTTGTGGCTATGGCAAGTGATATGTATATCACGAAGCC
AGATCTTATTGACGCTTTGCTTTCAACTCATGATGGGCTATCCCAGTCTTGGATAGTAGA
CAGTGGTGCCTCATTTCATGTAACTCCTTTGGAGTCTTTTGCCACATACACTGCAGGTAA
CCTGGGTAAAGTTACTTGGGTAATAACTATGCATGTGACA
■■Homology search results ■■ -
sp_hit_id P04146
Definition sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
Align length 30
Score (bit) 36.2
E-value 0.12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912454|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G01.
(580 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 36 0.12
sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 OS... 35 0.21
sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 OS... 35 0.21
sp|Q3T106|SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 OS... 35 0.21
sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mu... 35 0.35
sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga... 35 0.35
sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Ratt... 34 0.46
sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Po... 34 0.46
sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Ho... 34 0.46
sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bo... 34 0.46
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 34 0.60
sp|Q8VIG0|ZCH14_MOUSE Zinc finger CCHC domain-containing protein... 33 0.79
sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encepha... 33 0.79
sp|Q8WYQ9|ZCH14_HUMAN Zinc finger CCHC domain-containing protein... 33 1.0
sp|Q08876|SUHW_DROVI Protein suppressor of hairy wing OS=Drosoph... 33 1.3
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein... 33 1.3
sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain... 33 1.3
sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain... 33 1.3
sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain... 33 1.3
sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ... 33 1.3
sp|P46012|YKI5_CAEEL Uncharacterized protein C01G6.5 OS=Caenorha... 31 5.1
sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficienc... 31 5.1
sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficienc... 31 5.1
sp|Q69ZB8|ZCHC2_MOUSE Zinc finger CCHC domain-containing protein... 30 6.7
sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein... 30 6.7
sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficienc... 30 6.7
sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein OS=Hamster... 30 6.7
sp|Q498S6|ZCHC2_RAT Zinc finger CCHC domain-containing protein 2... 30 8.7
sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related... 30 8.7

>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
GN=GIP PE=1 SV=3
Length = 1409

Score = 36.2 bits (82), Expect = 0.12
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3

Query: 132 ISCYQCGRKGHKKPDCKFYKQELERKKQHS 221
+ C+ CGR+GH K DC YK+ L K + +
Sbjct: 230 VKCHHCGREGHIKKDCFHYKRILNNKNKEN 259


>sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7
OS=Mus musculus GN=Sfrs7 PE=1 SV=1
Length = 267

Score = 35.4 bits (80), Expect = 0.21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3

Query: 138 CYQCGRKGHKKPDCKFY---KQELERKKQHSGVRRRRMQK 248
CY+CG KGH DC Y ++ R + HS R RR +
Sbjct: 135 CYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 174


>sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7
OS=Homo sapiens GN=SFRS7 PE=1 SV=1
Length = 238

Score = 35.4 bits (80), Expect = 0.21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3

Query: 138 CYQCGRKGHKKPDCKFY---KQELERKKQHSGVRRRRMQK 248
CY+CG KGH DC Y ++ R + HS R RR +
Sbjct: 106 CYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 145


>sp|Q3T106|SFRS7_BOVIN Splicing factor, arginine/serine-rich 7
OS=Bos taurus GN=SFRS7 PE=2 SV=1
Length = 235

Score = 35.4 bits (80), Expect = 0.21
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3

Query: 138 CYQCGRKGHKKPDCKFY---KQELERKKQHSGVRRRRMQK 248
CY+CG KGH DC Y ++ R + HS R RR +
Sbjct: 106 CYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 145


>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus
musculus GN=Cnbp PE=2 SV=2
Length = 178

Score = 34.7 bits (78), Expect = 0.35
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3

Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206
+D +CY CGR GH DCK K+E E+
Sbjct: 71 EDEACYNCGRGGHIAKDCKEPKREREQ 97


>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein
OS=Gallus gallus GN=CNBP PE=2 SV=1
Length = 172

Score = 34.7 bits (78), Expect = 0.35
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3

Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206
+D +CY CGR GH DCK K+E E+
Sbjct: 65 EDKACYNCGRGGHIAKDCKEPKREREQ 91


>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus
norvegicus GN=Cnbp PE=2 SV=1
Length = 177

Score = 34.3 bits (77), Expect = 0.46
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3

Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206
Q+ +CY CGR GH DCK K+E E+
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQ 96


>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo
abelii GN=CNBP PE=2 SV=1
Length = 177

Score = 34.3 bits (77), Expect = 0.46
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3

Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206
Q+ +CY CGR GH DCK K+E E+
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQ 96


>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo
sapiens GN=CNBP PE=1 SV=1
Length = 177

Score = 34.3 bits (77), Expect = 0.46
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3

Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206
Q+ +CY CGR GH DCK K+E E+
Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQ 96


>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos
taurus GN=CNBP PE=2 SV=1
Length = 170

Score = 34.3 bits (77), Expect = 0.46
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3

Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206
Q+ +CY CGR GH DCK K+E E+
Sbjct: 63 QEDACYNCGRGGHIAKDCKEPKREREQ 89


tr_hit_id A5B377
Definition tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 47
Score (bit) 45.8
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912454|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G01.
(580 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis... 46 0.002
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh... 45 0.003
tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, who... 45 0.003
tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis... 45 0.004
tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis... 44 0.007
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis... 44 0.007
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis... 44 0.009
tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.009
tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.009
tr|A7R1U7|A7R1U7_VITVI Chromosome undetermined scaffold_377, who... 43 0.011
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol... 43 0.011
tr|A7QAU0|A7QAU0_VITVI Chromosome chr5 scaffold_72, whole genome... 43 0.011
tr|A7Q4Q2|A7Q4Q2_VITVI Chromosome chr10 scaffold_50, whole genom... 43 0.011
tr|A7Q007|A7Q007_VITVI Chromosome chr8 scaffold_41, whole genome... 43 0.011
tr|A7PQ76|A7PQ76_VITVI Chromosome chr18 scaffold_24, whole genom... 43 0.011
tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ... 43 0.011
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ... 43 0.011
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome... 43 0.011
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011

>tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037906 PE=4 SV=1
Length = 1148

Score = 45.8 bits (107), Expect = 0.002
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2

Query: 416 KPDLIDALLSTHDGLSQSWIVDSGASFHVTPL-ESFATYTAGNLGKV 553
+ +++DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 267 REEVLDALLLAVDSPLDDWVLDSGASFHTTPYREIIQNYVAGDFGKV 313


>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00009987001 PE=4 SV=1
Length = 466

Score = 45.1 bits (105), Expect = 0.003
Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2

Query: 431 DALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
DALL T D W++DSGASFH TP E Y AG+ GKV
Sbjct: 213 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 254


>tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00002150001 PE=4 SV=1
Length = 315

Score = 45.1 bits (105), Expect = 0.003
Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2

Query: 431 DALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
DALL T D W++DSGASFH TP E Y AG+ GKV
Sbjct: 227 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 268


>tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_010605 PE=4 SV=1
Length = 1146

Score = 45.1 bits (105), Expect = 0.003
Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2

Query: 431 DALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
DALL T D W++DSGASFH TP E Y AG+ GKV
Sbjct: 273 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 314


>tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_038889 PE=4 SV=1
Length = 925

Score = 44.7 bits (104), Expect = 0.004
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2

Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
D+ DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 271 DVQDALLFAIDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 315


>tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_038864 PE=4 SV=1
Length = 1172

Score = 44.3 bits (103), Expect = 0.005
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2

Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
+L DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 202 ELQDALLLAVDNPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 246


>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_044399 PE=4 SV=1
Length = 1264

Score = 43.9 bits (102), Expect = 0.007
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2

Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
++ DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 314


>tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_032634 PE=4 SV=1
Length = 1298

Score = 43.9 bits (102), Expect = 0.007
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2

Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
++ DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 314


>tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_035336 PE=4 SV=1
Length = 1244

Score = 43.5 bits (101), Expect = 0.009
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2

Query: 431 DALLSTHDGLSQSWIVDSGASFHVTPL-ESFATYTAGNLGKV 553
DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 273 DALLLAVDSPLDDWVLDSGASFHTTPXREIIQNYVAGDFGKV 314


>tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_034720 PE=4 SV=1
Length = 1172

Score = 43.5 bits (101), Expect = 0.009
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2

Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553
++ DALL D W++DSGASFH TP E Y AG+ GKV
Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYXAGDFGKV 314