BP912454 |
Clone id |
YMU001_000019_G01 |
Library |
YMU01 |
Length |
580 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000019_G01. |
Accession |
BP912454 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGGTACTCCTGCACCCCAGATGGTGAAGGCAGTGGCACAGCTTATCATGTAAGGGGCAG GTCAAAGAAAAGGAACAATGTAGCTAACAGGGGGCAAGAGTAGAAGTAAGAGCAAGGGGC AATCTCAAGATATAAGTTGCTATCAATGTGGACGCAAAGGGCATAAAAAGCCTGATTGCA AATTTTACAAGCAAGAGCTTGAGAGGAAGAAGCAGCACAGCGGGGTAAGAAGAAGAAGGA TGCAAAAGATGCTAAAGGTGATGATGACACCTCCTCTTCTTCCAAGGATGTTGACAAGGC AAATGTGGCCTCTAGTGTGGTCATAGAGGAAATTGTTGATGTGGACGAAGCATTTGTCGT AGCTTCGAGTGTCTTTGATGATGTTGTGGCTATGGCAAGTGATATGTATATCACGAAGCC AGATCTTATTGACGCTTTGCTTTCAACTCATGATGGGCTATCCCAGTCTTGGATAGTAGA CAGTGGTGCCTCATTTCATGTAACTCCTTTGGAGTCTTTTGCCACATACACTGCAGGTAA CCTGGGTAAAGTTACTTGGGTAATAACTATGCATGTGACA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P04146 |
Definition |
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster |
Align length |
30 |
Score (bit) |
36.2 |
E-value |
0.12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912454|Adiantum capillus-veneris mRNA, clone: YMU001_000019_G01. (580 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 36 0.12 sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 OS... 35 0.21 sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 OS... 35 0.21 sp|Q3T106|SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 OS... 35 0.21 sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mu... 35 0.35 sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Ga... 35 0.35 sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Ratt... 34 0.46 sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Po... 34 0.46 sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Ho... 34 0.46 sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bo... 34 0.46 sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 34 0.60 sp|Q8VIG0|ZCH14_MOUSE Zinc finger CCHC domain-containing protein... 33 0.79 sp|P33458|GAG_CAEVC Gag polyprotein OS=Caprine arthritis encepha... 33 0.79 sp|Q8WYQ9|ZCH14_HUMAN Zinc finger CCHC domain-containing protein... 33 1.0 sp|Q08876|SUHW_DROVI Protein suppressor of hairy wing OS=Drosoph... 33 1.3 sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein... 33 1.3 sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain... 33 1.3 sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain... 33 1.3 sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain... 33 1.3 sp|P03352|GAG_VILV Gag polyprotein OS=Maedi visna virus (strain ... 33 1.3 sp|P46012|YKI5_CAEEL Uncharacterized protein C01G6.5 OS=Caenorha... 31 5.1 sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficienc... 31 5.1 sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficienc... 31 5.1 sp|Q69ZB8|ZCHC2_MOUSE Zinc finger CCHC domain-containing protein... 30 6.7 sp|Q9C0B9|ZCHC2_HUMAN Zinc finger CCHC domain-containing protein... 30 6.7 sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficienc... 30 6.7 sp|P04023|GAG_IPHA Retrovirus-related Gag polyprotein OS=Hamster... 30 6.7 sp|Q498S6|ZCHC2_RAT Zinc finger CCHC domain-containing protein 2... 30 8.7 sp|P16900|GAG_OMVVS Gag polyprotein OS=Ovine maedi visna related... 30 8.7
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 Length = 1409
Score = 36.2 bits (82), Expect = 0.12 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3
Query: 132 ISCYQCGRKGHKKPDCKFYKQELERKKQHS 221 + C+ CGR+GH K DC YK+ L K + + Sbjct: 230 VKCHHCGREGHIKKDCFHYKRILNNKNKEN 259
>sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1 Length = 267
Score = 35.4 bits (80), Expect = 0.21 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3
Query: 138 CYQCGRKGHKKPDCKFY---KQELERKKQHSGVRRRRMQK 248 CY+CG KGH DC Y ++ R + HS R RR + Sbjct: 135 CYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 174
>sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1 Length = 238
Score = 35.4 bits (80), Expect = 0.21 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3
Query: 138 CYQCGRKGHKKPDCKFY---KQELERKKQHSGVRRRRMQK 248 CY+CG KGH DC Y ++ R + HS R RR + Sbjct: 106 CYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 145
>sp|Q3T106|SFRS7_BOVIN Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1 Length = 235
Score = 35.4 bits (80), Expect = 0.21 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3
Query: 138 CYQCGRKGHKKPDCKFY---KQELERKKQHSGVRRRRMQK 248 CY+CG KGH DC Y ++ R + HS R RR + Sbjct: 106 CYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSR 145
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2 SV=2 Length = 178
Score = 34.7 bits (78), Expect = 0.35 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3
Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206 +D +CY CGR GH DCK K+E E+ Sbjct: 71 EDEACYNCGRGGHIAKDCKEPKREREQ 97
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 Length = 172
Score = 34.7 bits (78), Expect = 0.35 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3
Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206 +D +CY CGR GH DCK K+E E+ Sbjct: 65 EDKACYNCGRGGHIAKDCKEPKREREQ 91
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 Length = 177
Score = 34.3 bits (77), Expect = 0.46 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3
Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206 Q+ +CY CGR GH DCK K+E E+ Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQ 96
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 Length = 177
Score = 34.3 bits (77), Expect = 0.46 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3
Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206 Q+ +CY CGR GH DCK K+E E+ Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQ 96
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 Length = 177
Score = 34.3 bits (77), Expect = 0.46 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3
Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206 Q+ +CY CGR GH DCK K+E E+ Sbjct: 70 QEDACYNCGRGGHIAKDCKEPKREREQ 96
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 Length = 170
Score = 34.3 bits (77), Expect = 0.46 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3
Query: 126 QDISCYQCGRKGHKKPDCKFYKQELER 206 Q+ +CY CGR GH DCK K+E E+ Sbjct: 63 QEDACYNCGRGGHIAKDCKEPKREREQ 89
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5B377 |
Definition |
tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
47 |
Score (bit) |
45.8 |
E-value |
0.002 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912454|Adiantum capillus-veneris mRNA, clone: YMU001_000019_G01. (580 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis... 46 0.002 tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh... 45 0.003 tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, who... 45 0.003 tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003 tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis... 45 0.004 tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005 tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis... 44 0.007 tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis... 44 0.007 tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis... 44 0.009 tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.009 tr|A5ADV4|A5ADV4_VITVI Putative uncharacterized protein OS=Vitis... 44 0.009 tr|A7R1U7|A7R1U7_VITVI Chromosome undetermined scaffold_377, who... 43 0.011 tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol... 43 0.011 tr|A7QAU0|A7QAU0_VITVI Chromosome chr5 scaffold_72, whole genome... 43 0.011 tr|A7Q4Q2|A7Q4Q2_VITVI Chromosome chr10 scaffold_50, whole genom... 43 0.011 tr|A7Q007|A7Q007_VITVI Chromosome chr8 scaffold_41, whole genome... 43 0.011 tr|A7PQ76|A7PQ76_VITVI Chromosome chr18 scaffold_24, whole genom... 43 0.011 tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ... 43 0.011 tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ... 43 0.011 tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome... 43 0.011 tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5CB53|A5CB53_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5BJ32|A5BJ32_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011 tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.011
>tr|A5B377|A5B377_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037906 PE=4 SV=1 Length = 1148
Score = 45.8 bits (107), Expect = 0.002 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +2
Query: 416 KPDLIDALLSTHDGLSQSWIVDSGASFHVTPL-ESFATYTAGNLGKV 553 + +++DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 267 REEVLDALLLAVDSPLDDWVLDSGASFHTTPYREIIQNYVAGDFGKV 313
>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009987001 PE=4 SV=1 Length = 466
Score = 45.1 bits (105), Expect = 0.003 Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +2
Query: 431 DALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 DALL T D W++DSGASFH TP E Y AG+ GKV Sbjct: 213 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 254
>tr|A7QMP4|A7QMP4_VITVI Chromosome undetermined scaffold_127, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002150001 PE=4 SV=1 Length = 315
Score = 45.1 bits (105), Expect = 0.003 Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +2
Query: 431 DALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 DALL T D W++DSGASFH TP E Y AG+ GKV Sbjct: 227 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 268
>tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010605 PE=4 SV=1 Length = 1146
Score = 45.1 bits (105), Expect = 0.003 Identities = 23/42 (54%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +2
Query: 431 DALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 DALL T D W++DSGASFH TP E Y AG+ GKV Sbjct: 273 DALLLTVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 314
>tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038889 PE=4 SV=1 Length = 925
Score = 44.7 bits (104), Expect = 0.004 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2
Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 D+ DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 271 DVQDALLFAIDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 315
>tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038864 PE=4 SV=1 Length = 1172
Score = 44.3 bits (103), Expect = 0.005 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2
Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 +L DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 202 ELQDALLLAVDNPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 246
>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044399 PE=4 SV=1 Length = 1264
Score = 43.9 bits (102), Expect = 0.007 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2
Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 ++ DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 314
>tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032634 PE=4 SV=1 Length = 1298
Score = 43.9 bits (102), Expect = 0.007 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2
Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 ++ DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKV 314
>tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035336 PE=4 SV=1 Length = 1244
Score = 43.5 bits (101), Expect = 0.009 Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +2
Query: 431 DALLSTHDGLSQSWIVDSGASFHVTPL-ESFATYTAGNLGKV 553 DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 273 DALLLAVDSPLDDWVLDSGASFHTTPXREIIQNYVAGDFGKV 314
>tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034720 PE=4 SV=1 Length = 1172
Score = 43.5 bits (101), Expect = 0.009 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2
Query: 422 DLIDALLSTHDGLSQSWIVDSGASFHVTP-LESFATYTAGNLGKV 553 ++ DALL D W++DSGASFH TP E Y AG+ GKV Sbjct: 270 EVXDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYXAGDFGKV 314
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