BP912455
Clone id YMU001_000019_G02
Library
Length 462
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTTTGACAAACAGGTAACTAGTTTCCCAAACCTGAACACCCTAGGCATGTCCTCTGTACA
TCCCAAAACACAAGTCAAGAGTTCCATCACACAATGTATCTCACCCACCAGCTTCAACAC
TGCCAATGAAGTTTCTTTAAGGAAGGACCACGGCACCACACGCTGTTTGACATTTCTGTG
AACAGATAGACAGCGACCTTGTGGAAACTGGGCAAACACCGCTGCAACAGCTCCTCTCAC
CATGTCGATGGGTTGGTCTTGTTGCCTTTTCCAACCCCTAAAGCTTCCCATTGCATGTCA
ACGGCACGTATACCATCTAGCTCATTGTGCCTGGAATACTGGCACCTATCATATGGAGGC
CTTGCCATAGACGTATTTAAGTCAGAGCCCATGGACGCATACTGTAAATTACCAGCCTGA
TATCCTAGCACCTCAAGATCCCTTCTGCTGGAACGCACCTCA
■■Homology search results ■■ -
sp_hit_id P03365
Definition sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus (strain BR6)
Align length 78
Score (bit) 31.6
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912455|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G02.
(462 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus... 32 1.7
sp|Q1GE00|TRUA_SILST tRNA pseudouridine synthase A OS=Silicibact... 31 3.0
sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arterit... 30 5.0
sp|O76011|KRT34_HUMAN Keratin, type I cuticular Ha4 OS=Homo sapi... 30 5.0
sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog OS=Hae... 30 6.5
sp|P74296|SYFB_SYNY3 Phenylalanyl-tRNA synthetase beta chain OS=... 29 8.5
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1 29 8.5
sp|Q8IX30|SCUB3_HUMAN Signal peptide, CUB and EGF-like domain-co... 29 8.5
sp|Q8MSS1|LVA_DROME Protein lava lamp OS=Drosophila melanogaster... 29 8.5

>sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus
(strain BR6) GN=pol PE=3 SV=2
Length = 899

Score = 31.6 bits (70), Expect = 1.7
Identities = 19/78 (24%), Positives = 26/78 (33%)
Frame = +2

Query: 215 NTAATAPLTMSMGWSCCLFQPLKLPIACQRHVYHLAHCAWNTGTYHMEALP*TYLSQSPW 394
+TA L +S WS C+ + P A C W G W
Sbjct: 316 STARVKRLDLSQPWSLCILKTEYTPTA----------CLWQDGVVE-------------W 352

Query: 395 THTVNYQPDILAPQDPFC 448
H + P ++ P D FC
Sbjct: 353 IHLPHISPKVITPYDIFC 370


>sp|Q1GE00|TRUA_SILST tRNA pseudouridine synthase A OS=Silicibacter
sp. (strain TM1040) GN=truA PE=3 SV=1
Length = 259

Score = 30.8 bits (68), Expect = 3.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -1

Query: 282 FRGWKRQQDQPIDMVRGAVAAVFAQFPQG 196
F GW+RQ+DQP V+GA+ A A+ G
Sbjct: 15 FAGWQRQKDQP--SVQGAIEAALARIEPG 41


>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis
virus (strain Bucyrus) GN=rep PE=1 SV=3
Length = 3175

Score = 30.0 bits (66), Expect = 5.0
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +2

Query: 233 PLTMSMGWSCCLFQPLKLPIACQRHVYHLAHCAWNTGT-----YHMEALP*TYLSQ 385
P+ + W CCLF PL + + ++HL CA TG +++ A +YLS+
Sbjct: 1313 PVVTGLLWLCCLFTPLSMRLC----LFHLV-CATVTGNVISLWFYITAAGTSYLSE 1363


>sp|O76011|KRT34_HUMAN Keratin, type I cuticular Ha4 OS=Homo sapiens
GN=KRT34 PE=1 SV=2
Length = 436

Score = 30.0 bits (66), Expect = 5.0
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -3

Query: 304 PLTCNGKL*GLEKATR--PTHRHGERSCCSGVCPVSTRSLSIC--SQKCQTACGA 152
P T NG + GL++ R P H H ++ C + ST S S C S C+T+C +
Sbjct: 7 PPTING-IKGLQRKERLKPAHIHLQQLTCFSITCSSTMSYSCCLPSLGCRTSCSS 60


>sp|P45178|GLGX_HAEIN Glycogen operon protein glgX homolog
OS=Haemophilus influenzae GN=glgX PE=3 SV=1
Length = 659

Score = 29.6 bits (65), Expect = 6.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +2

Query: 245 SMGWSCCLF----QPLKLPIACQRHVYHLAHCAWNTGT-----YHMEALP*TYLSQSPWT 397
++G CLF Q +LP+ +V+HLA TGT H E L P+
Sbjct: 35 AIGVELCLFDEQNQETRLPMVRTENVWHLAVTGVKTGTEYAFRIHGEFANPQKLILDPYA 94

Query: 398 HTVNYQPDI 424
VN +PD+
Sbjct: 95 KAVNGKPDL 103


>sp|P74296|SYFB_SYNY3 Phenylalanyl-tRNA synthetase beta chain
OS=Synechocystis sp. (strain PCC 6803) GN=pheT PE=3 SV=1
Length = 810

Score = 29.3 bits (64), Expect = 8.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +3

Query: 171 HFCEQIDSDLVETGQTPLQQ----LLSPCRWVGL 260
HFCEQ+ S+ + G +P Q L CR VGL
Sbjct: 492 HFCEQLPSNTIAGGLSPSYQAELALREACRGVGL 525


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
Length = 4998

Score = 29.3 bits (64), Expect = 8.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3

Query: 171 HFCEQIDSDLVETGQTPLQQLLSPC 245
H+CEQI++ VE TP Q+ L PC
Sbjct: 18 HWCEQIETVHVEEEVTPRQEDLVPC 42


>sp|Q8IX30|SCUB3_HUMAN Signal peptide, CUB and EGF-like
domain-containing protein 3 OS=Homo sapiens GN=SCUBE3
PE=1 SV=1
Length = 993

Score = 29.3 bits (64), Expect = 8.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3

Query: 304 PLTCNGKL*GLEKATRPTHRHGERSCCSGVCPVSTRSLSICSQKCQTACG 155
PL C G G KA +R G++ C+ CP R L +CG
Sbjct: 400 PLKCQGSP-GASKAMLSCNRSGKKDTCALTCPSRARFLPESENGFTVSCG 448


>sp|Q8MSS1|LVA_DROME Protein lava lamp OS=Drosophila melanogaster
GN=lva PE=1 SV=2
Length = 2779

Score = 29.3 bits (64), Expect = 8.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2

Query: 20 SFPNLNTLGMSSVHPKTQVKSSITQCISPTSFNTANEVSLRKDHGTTRCL 169
S +L TLG KT+ S T +SPT + +VSL + G+ + L
Sbjct: 95 SMESLKTLGQKLTVLKTRSGDSSTPLVSPTKDSDPGDVSLLQTSGSEKLL 144


tr_hit_id A6GB09
Definition tr|A6GB09|A6GB09_9DELT Serine/threonine kinase family protein OS=Plesiocystis pacifica SIR-1
Align length 55
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912455|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G02.
(462 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6GB09|A6GB09_9DELT Serine/threonine kinase family protein OS... 35 1.4
tr|Q18HX5|Q18HX5_HALWD Putative uncharacterized protein OS=Haloq... 34 4.1
tr|A1CFN1|A1CFN1_ASPCL Putative uncharacterized protein OS=Asper... 33 5.4
tr|B0JNV0|B0JNV0_MICAN Ferric uptake regulation protein OS=Micro... 33 7.0
tr|Q6ISY1|Q6ISY1_MICAE Ferric uptake regulator (Fur protein) OS=... 33 7.0
tr|B7JZK5|B7JZK5_SYNP8 Ferric uptake regulator, Fur family OS=Sy... 33 7.0
tr|B4BUX8|B4BUX8_9CHRO Ferric uptake regulator, Fur family OS=Cy... 33 7.0
tr|A8WEV7|A8WEV7_MICAE Fur OS=Microcystis aeruginosa XW01 PE=4 SV=1 33 7.0
tr|B1WQG9|B1WQG9_CYAA5 Ferric uptake regulation protein OS=Cyano... 33 9.1
tr|A3IU10|A3IU10_9CHRO Ferric uptake regulation protein OS=Cyano... 33 9.1

>tr|A6GB09|A6GB09_9DELT Serine/threonine kinase family protein
OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_13310 PE=4 SV=1
Length = 499

Score = 35.4 bits (80), Expect = 1.4
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = -3

Query: 298 TCNGKL*GLEKATRPTHRHGERSCCSGVCPVSTRSLSICSQKCQT------ACGA 152
TC G+ G + TRP+ R CC+G+ S R S + C T CGA
Sbjct: 443 TCGGRTSGSRRRTRPSRSRSARRCCAGIERWSRRWSSTSRRACSTRRTGPGRCGA 497


>tr|Q18HX5|Q18HX5_HALWD Putative uncharacterized protein
OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ2282A
PE=4 SV=1
Length = 390

Score = 33.9 bits (76), Expect = 4.1
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -2

Query: 302 VDMQWEALGVGKGNKTNPSTW*EELLQRCLPSFHKVAVYLFTEMSNSVWCRGPSLKKL 129
VD+ ALG G G+ +P+ W +E ++R +P +AV F S+ R P L L
Sbjct: 206 VDLSRGALGFGLGSSLSPADWADESVERQVPDGDPIAV--FETDRRSLLIRAPGLTPL 261


>tr|A1CFN1|A1CFN1_ASPCL Putative uncharacterized protein
OS=Aspergillus clavatus GN=ACLA_093790 PE=4 SV=1
Length = 434

Score = 33.5 bits (75), Expect = 5.4
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +2

Query: 158 TRCLTFL*TDRQRPCGNWANTAATAPLTMSMGWSCCLFQPLKLPIACQRHVYHLAHCAWN 337
TR +F+ D P NWA A P + M ++ + +P A H YH W
Sbjct: 85 TRLPSFIQNDILNPYINWAKRVARFPTDVVMVTHLLIYMTISVPSAIWLHYYHF---TWG 141

Query: 338 TGTYH 352
G H
Sbjct: 142 HGLLH 146


>tr|B0JNV0|B0JNV0_MICAN Ferric uptake regulation protein
OS=Microcystis aeruginosa (strain NIES-843) GN=fur PE=4
SV=1
Length = 183

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF++ L H L+ C+ KEG
Sbjct: 91 PYPHHHHHLVCIQCNKTIEFNNDSILKHSLKQCE----KEG 127


>tr|Q6ISY1|Q6ISY1_MICAE Ferric uptake regulator (Fur protein)
OS=Microcystis aeruginosa PCC 7806 GN=fur PE=4 SV=1
Length = 183

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF++ L H L+ C+ KEG
Sbjct: 91 PYPHHHHHLVCIQCNKTIEFNNDSILKHSLKQCE----KEG 127


>tr|B7JZK5|B7JZK5_SYNP8 Ferric uptake regulator, Fur family
OS=Synechococcus sp. (strain PCC 8801 / RF-1)
GN=PCC8801_0870 PE=4 SV=1
Length = 169

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF + L H L+ C+ KEG
Sbjct: 91 PSPNHHHHMVCIQCNKTIEFKNDSILKHSLKQCE----KEG 127


>tr|B4BUX8|B4BUX8_9CHRO Ferric uptake regulator, Fur family
OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_0595 PE=4
SV=1
Length = 169

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF + L H L+ C+ KEG
Sbjct: 91 PSPNHHHHMVCIQCNKTIEFKNDSILKHSLKQCE----KEG 127


>tr|A8WEV7|A8WEV7_MICAE Fur OS=Microcystis aeruginosa XW01 PE=4 SV=1
Length = 183

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF++ L H L+ C+ KEG
Sbjct: 91 PYPHHHHHLVCIQCNKTIEFNNDSILKHSLKQCE----KEG 127


>tr|B1WQG9|B1WQG9_CYAA5 Ferric uptake regulation protein
OS=Cyanothece (strain ATCC 51142) GN=fur1 PE=4 SV=1
Length = 177

Score = 32.7 bits (73), Expect = 9.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF + L H L+ C KEG
Sbjct: 91 PHPNHHHHMVCIQCNKTTEFKNDSILKHSLKQCD----KEG 127


>tr|A3IU10|A3IU10_9CHRO Ferric uptake regulation protein
OS=Cyanothece sp. CCY 0110 GN=CY0110_20615 PE=4 SV=1
Length = 179

Score = 32.7 bits (73), Expect = 9.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1

Query: 25 PKPEHPRHVLCTSQNTSQEFHHTMYLTHQLQHCQ*SFFKEG 147
P P H H++C N + EF + L H L+ C KEG
Sbjct: 91 PHPNHHHHMVCIQCNKTTEFKNDSILKHSLKQCD----KEG 127