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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912457
Clone id YMU001_000019_G04
Library
Length 140
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCTAAGAAGAGTGAGTTCTTTCTAAAAAAAATCCACTATTTGGGCCATATAGTATCTCA
CAATCAGGTGAGAATGGACCCTGATAAGATTCAAGCAGTTGTAGAATGGCCTACGCCAAC
TACATTACATGATGTACGAA
■■Homology search results ■■ -
sp_hit_id P10401
Definition sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster
Align length 45
Score (bit) 45.4
E-value 9.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912457|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G04.
         (140 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    45   9e-05
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra...    42   7e-04
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra...    41   0.002
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra...    38   0.014
sp|P92523|M860_ARATH Uncharacterized mitochondrial protein AtMg0...    38   0.014
sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen...    34   0.20 
sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (...    34   0.20 
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr...    33   0.57 
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ...    32   0.97 
sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia v...    31   2.2  
sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia vi...    31   2.2  
sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia vi...    31   2.2  
sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi...    31   2.2  
sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus...    31   2.2  
sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia...    30   2.8  

>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
           transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1035

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/45 (40%), Positives = 31/45 (68%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K+ FF + + YLG IVS +  + DP+K++A+ E+P P  ++ VR
Sbjct: 374 EKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVR 418


>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
           transposon 297 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1059

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 17/44 (38%), Positives = 31/44 (70%)
 Frame = +2

Query: 8   KSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           K EF  K+ ++LGHIV+ + ++ +P K++A+V +P PT   ++R
Sbjct: 399 KCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442


>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
           transposon opus OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1003

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/45 (33%), Positives = 32/45 (71%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +KS F   ++ +LG+IV+ + ++ DP K++A+ E P PT++ +++
Sbjct: 315 EKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359


>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
           transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1058

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 13/44 (29%), Positives = 31/44 (70%)
 Frame = +2

Query: 8   KSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           K EF  ++  +LGH+++ + ++ +P+KI+A+ ++P PT   +++
Sbjct: 400 KCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443


>sp|P92523|M860_ARATH Uncharacterized mitochondrial protein
           AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
          Length = 158

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGH--IVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           KK  F   +I YLGH  I+S   V  DP K++A+V WP P    ++R
Sbjct: 21  KKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELR 67


>sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogenous
           virus ECE1 GN=pol PE=3 SV=1
          Length = 1046

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   AKKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           AKK++    K+ YLG+I+S  +  + P +I+ V   P P    +VR
Sbjct: 231 AKKAQICQTKVTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVR 276


>sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus
           (strain M7) GN=pol PE=3 SV=1
          Length = 1189

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   AKKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           AKK++    K+ YLG+I+S  +  + P +I+ V   P P    +VR
Sbjct: 374 AKKAQICQTKVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVR 419


>sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus
           GN=pro-pol PE=3 SV=1
          Length = 1127

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 2   AKKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           AKK++   +++ YLG+++   +  + P +   V++ PTPTT   VR
Sbjct: 335 AKKAQLCREEVTYLGYLLKGGKRWLTPARKATVMKIPTPTTPRQVR 380


>sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus
           GN=pol PE=3 SV=1
          Length = 1165

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 2   AKKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           AKK++   +++ YLG+++   +  + P +   V++ P PTT   VR
Sbjct: 373 AKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVR 418


>sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia
           virus GN=pol PE=1 SV=2
          Length = 1199

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   AKKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           AKK++   K++ YLG+++   Q  +   + + V+  PTP T   +R
Sbjct: 376 AKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLR 421
tr_hit_id A8NMX0
Definition tr|A8NMX0|A8NMX0_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 45
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912457|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G04.
         (140 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NMX0|A8NMX0_COPC7 Putative uncharacterized protein OS=Copri...    60   7e-08
tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 ...    57   5e-07
tr|A8PFP3|A8PFP3_COPC7 Putative uncharacterized protein OS=Copri...    56   8e-07
tr|A8PFB6|A8PFB6_COPC7 Putative uncharacterized protein OS=Copri...    56   8e-07
tr|A8P1K0|A8P1K0_COPC7 Putative uncharacterized protein OS=Copri...    56   8e-07
tr|A8NLW6|A8NLW6_COPC7 Putative uncharacterized protein OS=Copri...    56   8e-07
tr|A8NGK0|A8NGK0_COPC7 Putative uncharacterized protein OS=Copri...    56   8e-07
tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris ...    55   1e-06
tr|A8P2A7|A8P2A7_COPC7 Putative uncharacterized protein OS=Copri...    55   1e-06
tr|A8P1A6|A8P1A6_COPC7 Putative uncharacterized protein OS=Copri...    55   1e-06
tr|A8P0M2|A8P0M2_COPC7 Putative uncharacterized protein OS=Copri...    55   1e-06
tr|A8N9N7|A8N9N7_COPC7 Putative uncharacterized protein OS=Copri...    55   2e-06
tr|A5X2S4|A5X2S4_9ERIC Polyprotein OS=Primula vulgaris PE=4 SV=1       54   4e-06
tr|Q4QXS8|Q4QXS8_HORVD Polyprotein OS=Hordeum vulgare var. disti...    54   5e-06
tr|A8N6R5|A8N6R5_COPC7 Putative uncharacterized protein OS=Copri...    54   5e-06
tr|Q8W5B7|Q8W5B7_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    53   7e-06
tr|Q10GH3|Q10GH3_ORYSJ Retrotransposon protein, putative, Ty3-gy...    53   7e-06
tr|A8NSZ1|A8NSZ1_COPC7 Putative uncharacterized protein OS=Copri...    53   7e-06
tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1               53   9e-06
tr|A8NDV7|A8NDV7_COPC7 Putative uncharacterized protein OS=Copri...    53   9e-06
tr|A5BSX6|A5BSX6_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A8PJ20|A8PJ20_COPC7 Putative uncharacterized protein OS=Copri...    52   1e-05
tr|A8NP93|A8NP93_COPC7 Putative uncharacterized protein OS=Copri...    52   1e-05
tr|A7BIS0|A7BIS0_LENED Pro-pol protein (Fragment) OS=Lentinula e...    52   1e-05
tr|O10377|O10377_9VIRU Polyprotein; reverse transcriptase, RNase...    52   1e-05
tr|B4YF15|B4YF15_ANACO Polyprotein (Fragment) OS=Ananas comosus ...    52   1e-05
tr|A5BU14|A5BU14_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5B322|A5B322_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|A5AVS3|A5AVS3_VITVI Putative uncharacterized protein OS=Vitis...    52   1e-05
tr|Q6R662|Q6R662_MELLI Polyprotein OS=Melampsora lini PE=4 SV=1        52   1e-05

>tr|A8NMX0|A8NMX0_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_12530 PE=4 SV=1
          Length = 377

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K  F  K++ YLG IVSHNQVRMDP K+ AV +WPTP + H+V+
Sbjct: 19  EKCAFKAKEVEYLGVIVSHNQVRMDPAKVDAVRDWPTPRSKHEVQ 63


>tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4
           SV=1
          Length = 1542

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 24/45 (53%), Positives = 34/45 (75%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K EF  ++I +LGH+VS NQVRMDP K+QA+V+W  P  + D+R
Sbjct: 799 EKCEFAQQEIKFLGHLVSKNQVRMDPKKVQAIVDWQAPRHVKDLR 843


>tr|A8PFP3|A8PFP3_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04821 PE=4 SV=1
          Length = 819

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K  F  K++ YLG IVSHNQVRMDP K+ AV +WPTP +  +V+
Sbjct: 509 EKCVFEAKEVEYLGVIVSHNQVRMDPAKVDAVRDWPTPRSKREVQ 553


>tr|A8PFB6|A8PFB6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_13063 PE=4 SV=1
          Length = 723

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K  F  K++ YLG IVSHNQVRMDP K+ AV +WPTP +  +V+
Sbjct: 413 EKCVFEAKEVEYLGVIVSHNQVRMDPAKVDAVRDWPTPRSKREVQ 457


>tr|A8P1K0|A8P1K0_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_05595 PE=4 SV=1
          Length = 788

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K  F  K++ YLG IVSHNQVRMDP K+ AV +WPTP +  +V+
Sbjct: 509 EKCVFEAKEVEYLGVIVSHNQVRMDPAKVDAVRDWPTPRSKREVQ 553


>tr|A8NLW6|A8NLW6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_13300 PE=4 SV=1
          Length = 1240

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K  F  K++ YLG IVSHNQVRMDP K+ AV +WPTP +  +V+
Sbjct: 424 EKCVFEAKEVEYLGVIVSHNQVRMDPAKVDAVRDWPTPRSKREVQ 468


>tr|A8NGK0|A8NGK0_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_11748 PE=4 SV=1
          Length = 724

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K  F  K++ YLG IVSHNQVRMDP K+ AV +WPTP +  +V+
Sbjct: 53  EKCVFKAKEVEYLGVIVSHNQVRMDPAKVDAVRDWPTPRSKREVQ 97


>tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris
           PE=4 SV=1
          Length = 1501

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +2

Query: 8   KSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           K EF L+K+ +LGH VS   V +DP KIQAV EWPTP ++ D+R
Sbjct: 748 KCEFRLEKVAFLGHFVSKEGVSVDPAKIQAVSEWPTPKSVTDIR 791


>tr|A8P2A7|A8P2A7_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04718 PE=4 SV=1
          Length = 262

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 21/45 (46%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K +F   +I YLG I+ H+++ MDP+K++ + EWPTPTT+  VR
Sbjct: 112 EKCQFAQTRIEYLGMIIEHDKIMMDPEKVKGMAEWPTPTTVKQVR 156


>tr|A8P1A6|A8P1A6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_07552 PE=4 SV=1
          Length = 1053

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 21/45 (46%), Positives = 33/45 (73%)
 Frame = +2

Query: 5   KKSEFFLKKIHYLGHIVSHNQVRMDPDKIQAVVEWPTPTTLHDVR 139
           +K +F   +I YLG I+ H+++ MDP+K++ + EWPTPTT+  VR
Sbjct: 302 EKCQFAQTRIEYLGMIIEHDKIMMDPEKVKGLAEWPTPTTVKQVR 346