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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912462
Clone id YMU001_000019_D11
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGCATGTTGGACTTATGGAAAGAGGAAGTAGCATGTAGAGGGCAATGGCGTAGAGGCTT
CTTGGAGTGACGTTGGGCTAAAAATTTAGCAAATGAAATTCTGTTCAAGTGAATGAAAGG
CTTGTATTTATAAGAGAGGTGGTCTCCTTTGTCATTTCAGTCCTCCTTTGAAATTTGAGA
CCTCCTTTGAAATTTGCGGCATTCTTTGAAAATTCGGGCCTTCTTTGAAATTTGAGGCCT
CTGAATTTTGAGGCCTTCTTTGAAATTTGATGCCTCTTTTGAAATTTGAGGCCAGTTTTT
AGAATCTTCTAAAACCATCTGTTTTTGGAAAATTGTTAACGGAAAATTGTTAACTATCAT
GAAATATCAACATGGGTATCAAATGAAAGCTCTTTTCGAGTAGAATACATGATACTGGTT
CAAGAGCTGATGAGAGAGACCTTTAGAGATTATCATGGAAGAAGCGTCAGACACTCTTCC
GCTTTCACCCAATGACACTCTTAACA
■■Homology search results ■■ -
sp_hit_id P35341
Definition sp|P35341|L_SV41 Large structural protein OS=Simian virus 41
Align length 90
Score (bit) 34.3
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912462|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_D11.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35341|L_SV41 Large structural protein OS=Simian virus 41 GN=...    34   0.34 
sp|P26676|L_PI2HT Large structural protein OS=Human parainfluenz...    34   0.34 
sp|Q9W742|FZ10B_XENLA Frizzled-10-B OS=Xenopus laevis GN=fzd10-B...    30   4.9  
sp|Q9DEB5|FZ10A_XENLA Frizzled-10-A OS=Xenopus laevis GN=fzd10-A...    30   4.9  
sp|Q9R216|FZD9_MOUSE Frizzled-9 OS=Mus musculus GN=Fzd9 PE=2 SV=1      30   8.4  
sp|O00144|FZD9_HUMAN Frizzled-9 OS=Homo sapiens GN=FZD9 PE=2 SV=1      30   8.4  
sp|Q8BKG4|FZD10_MOUSE Frizzled-10 OS=Mus musculus GN=Fzd10 PE=2 ...    30   8.4  

>sp|P35341|L_SV41 Large structural protein OS=Simian virus 41 GN=L
           PE=3 SV=1
          Length = 2269

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 23/90 (25%), Positives = 46/90 (51%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF+++   P  + + ++    ++NW QI+ E SN  E L   R +++++     + R  +
Sbjct: 25  YFLLLGKLPHNLSEDEITPLHNQNWDQIAHEESNLSERLFAVRSELTRR---IAQLRATR 81

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLNRI 97
            RS+I+     +   +L   +KP+  LN I
Sbjct: 82  WRSEIAVLLWPNSLPYLC-TFKPYNRLNTI 110


>sp|P26676|L_PI2HT Large structural protein OS=Human parainfluenza 2
           virus (strain Toshiba) GN=L PE=3 SV=1
          Length = 2262

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECR 196
           Y++++ +FP  +   ++    + +W QI++E SN  E L + + ++ K+   F+  R
Sbjct: 25  YYLLLGHFPHDLDISEISPLHNNDWDQIAREESNLAERLGVAKSELIKRVPAFRATR 81


>sp|Q9W742|FZ10B_XENLA Frizzled-10-B OS=Xenopus laevis GN=fzd10-B
           PE=2 SV=1
          Length = 580

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 220 GPNFQRMPQISKEVSNFKGGLK*QRRPPLL*IQAFHSLEQNFIC*IFSPTSLQEASTPLP 41
           G N  RMP +    +  +  ++     PL+     HS  + F+C +++P   ++ STP+P
Sbjct: 46  GYNMTRMPNLMGHENQKEAAIQLHEFAPLV-EYGCHSHLKFFLCSLYAPMCTEQVSTPIP 104

Query: 40  S 38
           +
Sbjct: 105 A 105


>sp|Q9DEB5|FZ10A_XENLA Frizzled-10-A OS=Xenopus laevis GN=fzd10-A
           PE=2 SV=1
          Length = 586

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 220 GPNFQRMPQISKEVSNFKGGLK*QRRPPLL*IQAFHSLEQNFIC*IFSPTSLQEASTPLP 41
           G N  RMP +    +  +  ++     PL+     HS  + F+C +++P   ++ STP+P
Sbjct: 52  GYNMTRMPNLMGHENQKEAAIQLHEFAPLV-EYGCHSHLKFFLCSLYAPMCTEQVSTPIP 110

Query: 40  S 38
           +
Sbjct: 111 A 111


>sp|Q9R216|FZD9_MOUSE Frizzled-9 OS=Mus musculus GN=Fzd9 PE=2 SV=1
          Length = 592

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 220 GPNFQRMPQISKEVSNFKGGLK*QRRPPLL*IQAFHSLEQNFIC*IFSPTSLQEASTPLP 41
           G N  RMP +    S  +   +     PL+     HS  + F+C +++P    + STP+P
Sbjct: 52  GYNLTRMPNLLGHTSQGEAAAQLAEFSPLV-QYGCHSHLRFFLCSLYAPMCTDQVSTPIP 110

Query: 40  S 38
           +
Sbjct: 111 A 111


>sp|O00144|FZD9_HUMAN Frizzled-9 OS=Homo sapiens GN=FZD9 PE=2 SV=1
          Length = 591

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 220 GPNFQRMPQISKEVSNFKGGLK*QRRPPLL*IQAFHSLEQNFIC*IFSPTSLQEASTPLP 41
           G N  RMP +    S  +   +     PL+     HS  + F+C +++P    + STP+P
Sbjct: 51  GYNLTRMPNLLGHTSQGEAAAELAEFAPLV-QYGCHSHLRFFLCSLYAPMCTDQVSTPIP 109

Query: 40  S 38
           +
Sbjct: 110 A 110


>sp|Q8BKG4|FZD10_MOUSE Frizzled-10 OS=Mus musculus GN=Fzd10 PE=2
           SV=1
          Length = 582

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 220 GPNFQRMPQISKEVSNFKGGLK*QRRPPLL*IQAFHSLEQNFIC*IFSPTSLQEASTPLP 41
           G N  RMP +    +  +  ++     PL+     HS  + F+C +++P   ++ STP+P
Sbjct: 47  GYNTTRMPNLMGHENQREAAIQLHEFAPLV-EYGCHSHLRFFLCSLYAPMCTEQVSTPIP 105

Query: 40  S 38
           +
Sbjct: 106 A 106
tr_hit_id Q8NWM1
Definition tr|Q8NWM1|Q8NWM1_STAAW Putative uncharacterized protein MW1376 OS=Staphylococcus aureus (strain MW2)
Align length 88
Score (bit) 37.0
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912462|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_D11.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8NWM1|Q8NWM1_STAAW Putative uncharacterized protein MW1376 O...    37   0.54 
tr|Q6G976|Q6G976_STAAS Putative lipoprotein OS=Staphylococcus au...    37   0.54 
tr|Q99U02|Q99U02_STAAM Putative uncharacterized protein OS=Staph...    37   0.71 
tr|Q7A5I0|Q7A5I0_STAAN Putative uncharacterized protein SA1319 O...    37   0.71 
tr|A7X2J9|A7X2J9_STAA1 Putative uncharacterized protein OS=Staph...    37   0.71 
tr|A6U1V7|A6U1V7_STAA2 Putative uncharacterized protein OS=Staph...    37   0.71 
tr|A5IT16|A5IT16_STAA9 Putative uncharacterized protein OS=Staph...    37   0.71 
tr|Q6GGS5|Q6GGS5_STAAR Putative lipoprotein OS=Staphylococcus au...    36   0.92 
tr|A0C6J2|A0C6J2_PARTE Chromosome undetermined scaffold_152, who...    35   2.1  
tr|Q4R4G3|Q4R4G3_PI2H Large protein OS=Human parainfluenza 2 vir...    34   3.5  
tr|B8QTR4|B8QTR4_9CAUD Hypothetical phage protein OS=Erwinia pha...    34   3.5  
tr|Q6FPV2|Q6FPV2_CANGA Similar to uniprot|P08964 Saccharomyces c...    34   3.5  
tr|B1BHS4|B1BHS4_CLOPE Putative uncharacterized protein OS=Clost...    34   4.6  
tr|B6MNA9|B6MNA9_BRAFL Putative uncharacterized protein OS=Branc...    34   4.6  
tr|B6LLB0|B6LLB0_BRAFL Putative uncharacterized protein OS=Branc...    34   4.6  
tr|B6AEP5|B6AEP5_9CRYT Ubiquitin-activating enzyme, putative OS=...    34   4.6  
tr|B1RRY0|B1RRY0_CLOPE Putative uncharacterized protein OS=Clost...    33   6.0  
tr|B6AFH5|B6AFH5_9CRYT Putative uncharacterized protein OS=Crypt...    33   6.0  
tr|Q8XHG9|Q8XHG9_CLOPE Putative uncharacterized protein CPE2516 ...    33   7.8  
tr|Q67MB8|Q67MB8_SYMTH Putative long-chain fatty-acid-CoA ligase...    33   7.8  
tr|Q0TMD7|Q0TMD7_CLOP1 Putative uncharacterized protein OS=Clost...    33   7.8  
tr|Q0SQ35|Q0SQ35_CLOPS Putative uncharacterized protein OS=Clost...    33   7.8  
tr|B1UZX5|B1UZX5_CLOPE Putative uncharacterized protein OS=Clost...    33   7.8  
tr|B1RFN9|B1RFN9_CLOPE Putative uncharacterized protein OS=Clost...    33   7.8  
tr|B1R627|B1R627_CLOPE Putative uncharacterized protein OS=Clost...    33   7.8  
tr|B1BSC9|B1BSC9_CLOPE Putative uncharacterized protein OS=Clost...    33   7.8  
tr|Q550Y2|Q550Y2_DICDI Putative uncharacterized protein OS=Dicty...    33   7.8  

>tr|Q8NWM1|Q8NWM1_STAAW Putative uncharacterized protein MW1376
           OS=Staphylococcus aureus (strain MW2) GN=MW1376 PE=4
           SV=1
          Length = 301

 Score = 37.0 bits (84), Expect = 0.54
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVIDLSESTKK-LHLN 268


>tr|Q6G976|Q6G976_STAAS Putative lipoprotein OS=Staphylococcus
           aureus (strain MSSA476) GN=SAS1428 PE=4 SV=1
          Length = 301

 Score = 37.0 bits (84), Expect = 0.54
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVIDLSESTKK-LHLN 268


>tr|Q99U02|Q99U02_STAAM Putative uncharacterized protein
           OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
           GN=SAV1488 PE=4 SV=1
          Length = 301

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVLDLSESTKK-LHLN 268


>tr|Q7A5I0|Q7A5I0_STAAN Putative uncharacterized protein SA1319
           OS=Staphylococcus aureus (strain N315) GN=SA1319 PE=4
           SV=1
          Length = 301

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVLDLSESTKK-LHLN 268


>tr|A7X2J9|A7X2J9_STAA1 Putative uncharacterized protein
           OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
           GN=SAHV_1476 PE=4 SV=1
          Length = 301

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVLDLSESTKK-LHLN 268


>tr|A6U1V7|A6U1V7_STAA2 Putative uncharacterized protein
           OS=Staphylococcus aureus (strain JH1) GN=SaurJH1_1576
           PE=3 SV=1
          Length = 301

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVLDLSESTKK-LHLN 268


>tr|A5IT16|A5IT16_STAA9 Putative uncharacterized protein
           OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_1545
           PE=3 SV=1
          Length = 301

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 32/88 (36%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           R S  SK+   D    LS   K  +HLN
Sbjct: 242 RSSNFSKDKKLDDVLDLSESTKK-LHLN 268


>tr|Q6GGS5|Q6GGS5_STAAR Putative lipoprotein OS=Staphylococcus
           aureus (strain MRSA252) GN=SAR1495 PE=4 SV=1
          Length = 301

 Score = 36.2 bits (82), Expect = 0.92
 Identities = 31/88 (35%), Positives = 40/88 (45%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQ 187
           YF IV N P T+ + +   E     P I K   NFK+G+K  R  +  KA I      F 
Sbjct: 188 YFYIVANIP-TLQEYRKYYE-----PLIKKNNLNFKKGMKEARKGVGYKAEIEVHTTLFS 241

Query: 186 RRSQISKED*NDKGDHLSYKYKPFIHLN 103
           + S  SK+   D    LS   K  +HLN
Sbjct: 242 KSSNFSKDKKLDDVIDLSESTKK-LHLN 268


>tr|A0C6J2|A0C6J2_PARTE Chromosome undetermined scaffold_152, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00035538001 PE=4 SV=1
          Length = 357

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 20/79 (25%), Positives = 40/79 (50%)
 Frame = -3

Query: 318 MVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECRKFQRRSQISKED*NDKGDH 139
           M++E  +    I+K+ +NF +GL +++    +    F + RK+ +  Q S +    K D 
Sbjct: 1   MIIEPLQQQVLINKDKNNF-QGLTVRQKNNYQGTNQFVQRRKYSKPKQFSTQFPQIKKDD 59

Query: 138 LSYKYKPFIHLNRISFAKF 82
             Y++K F H+  +  A +
Sbjct: 60  TQYEFKMFHHVQNMKSAHY 78


>tr|Q4R4G3|Q4R4G3_PI2H Large protein OS=Human parainfluenza 2 virus
           GN=L PE=4 SV=1
          Length = 2263

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 14/57 (24%), Positives = 32/57 (56%)
 Frame = -3

Query: 366 YFMIVNNFPLTIFQKQMVLEDSKNWPQISKEASNFKEGLKIQRPQISKKARIFKECR 196
           Y++++ +FP  +   ++    + +W QI++E SN  E L + + ++ K+   F+  R
Sbjct: 25  YYLLLGHFPHDLDISEISPLHNNDWDQIAREESNLAERLGVAKSELIKRVPAFRATR 81