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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912463
Clone id YMU001_000019_D12
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACTAGTCCTGCAGGTTAAACGAATTCGCCTTGAGATATTACCTGCAGGTACTCGGTGGT
GGCTCATGTGCTGTTGAAGTTGTCTCTTTTTCGAGAATGCATCTCAGTACTCGAGCAACT
ACTATGTATGACAAAAAAAAGATGCAGGTCAGTAGGGTGTTCTGGGAGGTCAAGCTATGT
GATGTTCAGCGATCCCATCAATGGAATTGCAAACCATTGAAGGGCTCAAGAGCAATGCAC
TGTGTGAATGGGTATTCTGAGAAAAACACTTGTGCATTGCGATCAAAATGGTTGTCATGC
TTTTGTTTTCCTTGCAGGCTTGGCCATTGGAGAATGTGTATGAATAGATCACATGTGGAG
ACGTGGGAATATCACACTTTGGAGCCACTTGCTAATGATTCTCAGTCATACGTAGACTCA
GACGATGAGGAGTTCCATGGTGCCACTTATGCAGGTCATTATGACTCCTTAAGCGATGCT
CTCACACCTGGAGACAATTGTGATGTCACTTATGAAGAGAATAATGAGGAGGTTG
■■Homology search results ■■ -
sp_hit_id Q96JM4
Definition sp|Q96JM4|LRIQ1_HUMAN Leucine-rich repeat and IQ domain-containing protein 1 OS=Homo sapiens
Align length 44
Score (bit) 30.0
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912463|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_D12.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96JM4|LRIQ1_HUMAN Leucine-rich repeat and IQ domain-containi...    30   6.5  
sp|A5PLF5|TM2D3_DANRE TM2 domain-containing protein 3 OS=Danio r...    30   8.4  
sp|A1SEK2|RPOC_NOCSJ DNA-directed RNA polymerase subunit beta' O...    30   8.4  

>sp|Q96JM4|LRIQ1_HUMAN Leucine-rich repeat and IQ domain-containing
           protein 1 OS=Homo sapiens GN=LRRIQ1 PE=2 SV=2
          Length = 1336

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 34  SCAVEVVSFSRMHLSTRATTMYDKKKMQVSRVFWEVKLCDVQRS 165
           SC+   VS + MHL T  +T Y++   Q+ ++  E++  +  RS
Sbjct: 82  SCSYGAVSNNHMHLRTGLSTEYEESSEQLIKILSEIEKEEFMRS 125


>sp|A5PLF5|TM2D3_DANRE TM2 domain-containing protein 3 OS=Danio
           rerio GN=tm2d3 PE=2 SV=2
          Length = 244

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = +1

Query: 148 CDVQRSHQWNCKPLKGSRAMHCVNGYSEKNTCALRSKWLSCFCFPCRLGHWRMCMNRSHV 327
           C   R H + C+P  G   +HCV+   E+      S  L  FCF      +R C N S  
Sbjct: 87  CSYGRPHNYTCRPRAG---VHCVSDQGERQQNFTLS-LLCRFCFQLDASQYR-CSNSSDC 141

Query: 328 ET 333
            T
Sbjct: 142 MT 143


>sp|A1SEK2|RPOC_NOCSJ DNA-directed RNA polymerase subunit beta'
           OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rpoC
           PE=3 SV=1
          Length = 1290

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 DEEFHGATYAGHYDSLSDALTPGDNCDV 477
           D  FH AT +G   S+ D  TPGD  D+
Sbjct: 702 DTGFHWATRSGVTVSIDDVTTPGDKADI 729
tr_hit_id A7SXG2
Definition tr|A7SXG2|A7SXG2_NEMVE Predicted protein OS=Nematostella vectensis
Align length 93
Score (bit) 35.4
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912463|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_D12.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SXG2|A7SXG2_NEMVE Predicted protein OS=Nematostella vectens...    35   1.6  
tr|Q4RZG8|Q4RZG8_TETNG Chromosome undetermined SCAF14928, whole ...    35   2.7  
tr|Q5TX73|Q5TX73_ANOGA AGAP011049-PA (Fragment) OS=Anopheles gam...    34   3.5  
tr|B4LSV5|B4LSV5_DROVI GJ17703 OS=Drosophila virilis GN=GJ17703 ...    34   4.6  
tr|Q24UV5|Q24UV5_DESHY Putative uncharacterized protein OS=Desul...    33   5.8  
tr|A7LUW7|A7LUW7_BACOV Putative uncharacterized protein OS=Bacte...    33   6.0  
tr|A7SPN6|A7SPN6_NEMVE Predicted protein OS=Nematostella vectens...    33   6.0  
tr|A7RMS7|A7RMS7_NEMVE Predicted protein OS=Nematostella vectens...    33   6.0  
tr|A3LUF3|A3LUF3_PICST Predicted protein OS=Pichia stipitis GN=P...    33   6.0  
tr|Q587L7|Q587L7_ONCKE Peroxisome proliferator-activated recepto...    33   7.8  
tr|Q587L5|Q587L5_ONCKE Peroxisome proliferator-activated recepto...    33   7.8  
tr|B6WJ74|B6WJ74_9BACE Putative uncharacterized protein OS=Bacte...    33   7.8  

>tr|A7SXG2|A7SXG2_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g219019 PE=4 SV=1
          Length = 721

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +1

Query: 70  HLSTRATTMYDKKKMQVSRVFWEVKLCD---VQRSHQWNCKPLKGSRAMHCVNGYSEKNT 240
           +LS++ T           R+++ + +     V R      K LKG R +H V   +    
Sbjct: 546 YLSSKFTLPTTSNTSLSKRIYFHIPVKGEGAVARRSDRTFKELKGIRKLHSVK--TTPVQ 603

Query: 241 CALRSKWLSCFCFPCRLGHWRMCMNRSHVETWE 339
           C + ++  SC CF C  G    C NR  V+ W+
Sbjct: 604 CKISTRLRSCLCFGCIEG--EECENREFVDEWK 634


>tr|Q4RZG8|Q4RZG8_TETNG Chromosome undetermined SCAF14928, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00026494001 PE=4 SV=1
          Length = 233

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 346 TLEPLANDSQSYVDSDDEE----FHGATYAGHYDSLSDALTPG 462
           T+  L  D+ S VDS DE+     H A Y+GH D+ S  LT G
Sbjct: 80  TINRLLTDNPSLVDSCDEDGYTPLHRAAYSGHVDAASALLTAG 122


>tr|Q5TX73|Q5TX73_ANOGA AGAP011049-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP011049 PE=4 SV=3
          Length = 687

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 18/140 (12%)
 Frame = +1

Query: 136 EVKLCDVQRSHQWNCKPLKGSRA--MHCVNGYSEKNTCALRSKWLSCFCFPCRLGHWRMC 309
           E K+ ++  SHQ   K L+   +  +H +     KN   +++    C C        R+ 
Sbjct: 508 ENKIRELTTSHQRQLKDLQEEHSFVVHSLESRDTKNAQEIQTLHKKCRCLTNLFEEMRLR 567

Query: 310 MNRSHVETWEYHTLEPLAN--DSQSYVDSDDEEFHGATYAGHYDSLSDA----------- 450
             R      +   +E L    +SQ     ++++        + +SL DA           
Sbjct: 568 YERREPRMEDLQQIEELKTVIESQEQAPYEEDDHQQVDEIEYVESLGDAPQVVLIPPAQF 627

Query: 451 ---LTPGDNCDVTYEENNEE 501
              +     CDV YEEN EE
Sbjct: 628 IPPMVHRTPCDVIYEENEEE 647


>tr|B4LSV5|B4LSV5_DROVI GJ17703 OS=Drosophila virilis GN=GJ17703
           PE=4 SV=1
          Length = 328

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 67  MHLSTRATTMYDKKKMQVSRVFWEVKLCDVQRSHQWNCKPLKGSRAMHCVNGY 225
           +H   R    YDKK   ++ V+W + L D+   +   C+P + +  +  +NGY
Sbjct: 89  VHNGLRNKVAYDKKLANMNLVYWNMHLQDMAEQYLHLCRPYRDTCLIIGLNGY 141


>tr|Q24UV5|Q24UV5_DESHY Putative uncharacterized protein
           OS=Desulfitobacterium hafniense (strain Y51) GN=DSY2398
           PE=4 SV=1
          Length = 253

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 186 IEGLKSNALCEWVF*EKHLCIAIKMVVMLLFSLQAWPLENVYE*ITCGDVGIS 344
           + GL ++ LC WVF  +H  I   + ++ + SL   PLEN+     C   G+S
Sbjct: 189 LTGLGASVLCLWVFGPEHFIIPAMVAIIGILSLFRKPLENL-----CKSEGVS 236


>tr|A7LUW7|A7LUW7_BACOV Putative uncharacterized protein
           OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_01616 PE=4
           SV=1
          Length = 495

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 313 NRSHVETWEYHTLEPLANDSQS---YVDSDDEEFHGATYAGHYDSLSDALTPGDNCDVTY 483
           +R H E  E   LE    ++ +   Y D+++ E    + A  YDSLSD LT  D  D   
Sbjct: 39  DRIHAELLENPALEEGKEENATDNEYSDTENAEDGMDSDANDYDSLSDYLTEDDIPDYKL 98

Query: 484 EENN 495
           +ENN
Sbjct: 99  QENN 102


>tr|A7SPN6|A7SPN6_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g215499 PE=4 SV=1
          Length = 644

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 181 KPLKGSRAMHCVNGYSEKNTCALRSKWLSCFCFPCRLGHWRMCMNRSHVETWEYHTL 351
           K  KG R  HCV    ++    +R +  +C+C  C +     C N++ ++ W+  T+
Sbjct: 448 KEAKGIRKWHCVKTLPQQEKVLVRHR--TCYCVSCIVKDEDSCTNKAWLDEWKEVTI 502


>tr|A7RMS7|A7RMS7_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g239440 PE=4 SV=1
          Length = 665

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 181 KPLKGSRAMHCVNGYSEKNTCALRSKWLSCFCFPCRLGHWRMCMNRSHVETWEYHTL 351
           K  KG R  HCV    ++    +R +  +C+C  C +     C N++ ++ W+  T+
Sbjct: 469 KEAKGIRKWHCVKTLPQQEKVLVRHR--TCYCVSCIVKDEDSCTNKAWLDEWKEVTI 523


>tr|A3LUF3|A3LUF3_PICST Predicted protein OS=Pichia stipitis
           GN=PICST_31745 PE=4 SV=2
          Length = 660

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +2

Query: 299 GECV*IDHMWRRGNITLWSHLLMILSHT*TQTMRSSMVPLMQVI-MTP*AMLSHLETIVM 475
           GEC+ I H+ +  ++TL  HL+    H  TQ  R  +V +  ++ +   + L +LE++ +
Sbjct: 259 GECLDISHLQKLTSVTLSKHLVF---HLPTQVRRLKLVSVCDLVGLDQLSELVNLESLKI 315

Query: 476 SLMKRIMRRL 505
           S   RI+ R+
Sbjct: 316 STTSRILDRI 325


>tr|Q587L7|Q587L7_ONCKE Peroxisome proliferator-activated receptor
           gamma OS=Oncorhynchus keta GN=PPARG PE=3 SV=1
          Length = 533

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 502 PPHYSLHK*HHNCLQV*EHRLRSHNDLHKWHHGTPHRLSLRMTENH*QVAPKCDIPTSPH 323
           P H+S +  HH+      H   SHN  H   H +PH  S     +H   +P      SPH
Sbjct: 53  PHHHSHNSPHHHSHNSPHHH--SHNSPHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPH 110



 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 502 PPHYSLHK*HHNCLQV*EHRLRSHNDLHKWHHGTPHRLSLRMTENH*QVAPKCDIPTSPH 323
           P H+S +  HH+      H   SHN  H   H +PH  S     +H   +P      SPH
Sbjct: 61  PHHHSHNSPHHHSHNSPHHH--SHNSPHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPH 118



 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 502 PPHYSLHK*HHNCLQV*EHRLRSHNDLHKWHHGTPHRLSLRMTENH*QVAPKCDIPTSPH 323
           P H+S +  HH+      H   SHN  H   H +PH  S     +H   +P      SPH
Sbjct: 69  PHHHSHNSPHHHSHNSPHHH--SHNSPHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPH 126



 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 502 PPHYSLHK*HHNCLQV*EHRLRSHNDLHKWHHGTPHRLSLRMTENH*QVAPKCDIPTSPH 323
           P H+S +  HH+      H   SHN  H   H +PH  S     +H   +P      SPH
Sbjct: 77  PHHHSHNSPHHHSHNSPHHH--SHNSPHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPH 134



 Score = 33.1 bits (74), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 502 PPHYSLHK*HHNCLQV*EHRLRSHNDLHKWHHGTPHRLSLRMTENH*QVAPKCDIPTSPH 323
           P H+S +  HH+      H   SHN  H   H +PH  S     +H   +P      SPH
Sbjct: 85  PHHHSHNSPHHHSHNSPHHH--SHNSPHHHSHNSPHHHSHNSPHHHSHNSPHHHSHNSPH 142