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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912467
Clone id YMU001_000019_H06
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCAGGAGGTCTGGTTCGAAGTCACCGGTACATCGAAGGGGGCGTGGTTAACAAATTGCA
CGAGTGATTGCTGGTGGTTCGGTTTCTTACCGTAATTGATCTTGCTCAAAGAAAGGTCAC
AGAATACGTGTGAGGTACTTGCTATCCATGACATTTCGACTTCACAAGACACCAGAAGGT
TTTGTATGCGAAACGTTGACGTGGAAAGATCTGACGAAGTCCACATGTTTGTGGCAGTTG
CGGCCCCATATAATCCTTCTTTGAGGTCAAAGAGGCGATGAGCTTTTTGCAGTATTCTGA
CCAGCTCCGTTGATGGTTTTGTAAATAGTGTAGTCAGACTGCCAGAGATGGGCTGTGGCC
TTATCCGATAGGGTGTACGAGTCTCTGTATAGTAATGGGTACTCCCACAAGCATCATGAT
TCATGCCAACATTGTTATTGTCACTAAATTGTCATCCTGAGGAAAATGTAAGTTAAAACT
GTGACTGGGCTGTTGAGGAGCATGCTGCAGAATGGTAATATCATTATTTGGTCTTAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id Q54QC0
Definition sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoideum
Align length 129
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912467|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H06.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoid...    32   1.5  
sp|Q63273|GRIK5_RAT Glutamate receptor, ionotropic kainate 5 OS=...    32   1.5  
sp|Q61626|GRIK5_MOUSE Glutamate receptor, ionotropic kainate 5 O...    32   1.5  
sp|Q16478|GRIK5_HUMAN Glutamate receptor, ionotropic kainate 5 O...    32   1.5  
sp|Q5B1X5|UTP10_EMENI U3 small nucleolar RNA-associated protein ...    31   3.3  
sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protei...    31   4.3  
sp|Q08358|PP220_ASFB7 Polyprotein pp220 OS=African swine fever v...    31   4.3  
sp|Q1RBP6|UXAB_ECOUT Altronate oxidoreductase OS=Escherichia col...    30   9.7  
sp|Q0THR7|UXAB_ECOL5 Altronate oxidoreductase OS=Escherichia col...    30   9.7  
sp|A1ABA1|UXAB_ECOK1 Altronate oxidoreductase OS=Escherichia col...    30   9.7  
sp|Q6PFQ2|EIF3C_DANRE Eukaryotic translation initiation factor 3...    30   9.7  
sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein OS=Mu...    30   9.7  

>sp|Q54QC0|MYBU_DICDI Myb-like protein U OS=Dictyostelium discoideum
            GN=mybU PE=4 SV=1
          Length = 2381

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 4/129 (3%)
 Frame = -1

Query: 388  TETRTPYRIRPQPISGSLTTLFTKPSTELVRILQKAHRLFDLKEGLYGAATATNMWTSSD 209
            T T TP    P P S S  TL T P  E   I+   ++  D+K+G+Y   + +N+ +S  
Sbjct: 1459 TPTSTPV---PAPTSLSTPTL-TSPVLETTTIIPSDNKEKDIKDGIY---SISNIISSEL 1511

Query: 208  LSTSTFRIQNL----LVSCEVEMSWIASTSHVFCDLSLSKINYGKKPNHQQSLVQFVNHA 41
            L   TF I+ +    L     +  +  + S+ F +  +  IN+    N  Q  +  +N  
Sbjct: 1512 LEIPTFSIEFISSGSLSIVSKQKCFFEAISNSFEEREIVSINFNSIFNTYQ-FISNINDK 1570

Query: 40   PFDVPVTSN 14
             F + +  N
Sbjct: 1571 AFIIQLFDN 1579


>sp|Q63273|GRIK5_RAT Glutamate receptor, ionotropic kainate 5
           OS=Rattus norvegicus GN=Grik5 PE=2 SV=1
          Length = 979

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
 Frame = -1

Query: 307 ELVRILQKAHRLFDLKEGLYGAATATNMWT---------SSDLSTSTFRIQNLLVSCEVE 155
           EL  +L+  +RL  +++GLYGA      WT          +DL+ + F I         E
Sbjct: 453 ELAELLRFRYRLRLVEDGLYGAPEPNGSWTGMVGELINRKADLAVAAFTI-------TAE 505

Query: 154 MSWIASTSHVFCDLSLS---KINYGKKPNHQQSLVQF 53
              +   S  F  L +S   +++ G+KP +   L  F
Sbjct: 506 REKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPF 542


>sp|Q61626|GRIK5_MOUSE Glutamate receptor, ionotropic kainate 5
           OS=Mus musculus GN=Grik5 PE=2 SV=1
          Length = 979

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
 Frame = -1

Query: 307 ELVRILQKAHRLFDLKEGLYGAATATNMWT---------SSDLSTSTFRIQNLLVSCEVE 155
           EL  +L+  +RL  +++GLYGA      WT          +DL+ + F I         E
Sbjct: 453 ELAELLRFRYRLRLVEDGLYGAPEPNGSWTGMVGELINRKADLAVAAFTI-------TAE 505

Query: 154 MSWIASTSHVFCDLSLS---KINYGKKPNHQQSLVQF 53
              +   S  F  L +S   +++ G+KP +   L  F
Sbjct: 506 REKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPF 542


>sp|Q16478|GRIK5_HUMAN Glutamate receptor, ionotropic kainate 5
           OS=Homo sapiens GN=GRIK5 PE=2 SV=2
          Length = 980

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
 Frame = -1

Query: 307 ELVRILQKAHRLFDLKEGLYGAATATNMWT---------SSDLSTSTFRIQNLLVSCEVE 155
           EL  +L+  +RL  +++GLYGA      WT          +DL+ + F I         E
Sbjct: 453 ELAELLRFRYRLRLVEDGLYGAPEPNGSWTGMVGELINRKADLAVAAFTI-------TAE 505

Query: 154 MSWIASTSHVFCDLSLS---KINYGKKPNHQQSLVQF 53
              +   S  F  L +S   +++ G+KP +   L  F
Sbjct: 506 REKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPF 542


>sp|Q5B1X5|UTP10_EMENI U3 small nucleolar RNA-associated protein 10
           OS=Emericella nidulans GN=utp10 PE=3 SV=1
          Length = 1801

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 99  ILLKERSQNTCEVLAIHD---ISTSQDTRRFCMRNVDVERSDEVHMFVAVAAPYNPSLRS 269
           +L K R  +  EV  +H+   IS S D     ++ V  +  D +++ ++   PY+PSLR+
Sbjct: 737 LLKKWRDMSEQEVAEVHEKEQISVS-DFEAQVLKTVTPKEKDSINLLLSTVTPYSPSLRA 795


>sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protein 13B
            OS=Mus musculus GN=Vps13b PE=2 SV=2
          Length = 4013

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -1

Query: 85   KPNHQQSLVQFVNHAPFDVPVTSNQTS 5
            +P+HQ S+V+ +N  PFD+ +T+++ S
Sbjct: 1815 RPSHQSSIVKNLNFIPFDIFITASRIS 1841


>sp|Q08358|PP220_ASFB7 Polyprotein pp220 OS=African swine fever virus
            (strain Badajoz 1971 Vero-adapted) GN=Ba71V-92 PE=1 SV=3
          Length = 2475

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 489  PSHSFNLHFPQDDNLVTITMLA*IMMLVGVP 397
            P  + N   PQD NLVT T+ A I+  VG+P
Sbjct: 1251 PDPTTNATAPQDQNLVTETLFAWIVPYVGIP 1281


>sp|Q1RBP6|UXAB_ECOUT Altronate oxidoreductase OS=Escherichia coli
           (strain UTI89 / UPEC) GN=uxaB PE=3 SV=1
          Length = 483

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = -2

Query: 330 HYLQNHQRSWSEY------CKKLIASLTSKKDYMGPQLPQTCGL 217
           H+L+ +Q+ WS+Y       ++L+A + ++KD+    L Q  GL
Sbjct: 416 HWLERYQQLWSQYRDRVIGTQELVAIVLAEKDHWEQDLTQVPGL 459


>sp|Q0THR7|UXAB_ECOL5 Altronate oxidoreductase OS=Escherichia coli
           O6:K15:H31 (strain 536 / UPEC) GN=uxaB PE=3 SV=1
          Length = 483

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = -2

Query: 330 HYLQNHQRSWSEY------CKKLIASLTSKKDYMGPQLPQTCGL 217
           H+L+ +Q+ WS+Y       ++L+A + ++KD+    L Q  GL
Sbjct: 416 HWLERYQQLWSQYRDRVIGTQELVAIVLAEKDHWEQDLTQVPGL 459


>sp|A1ABA1|UXAB_ECOK1 Altronate oxidoreductase OS=Escherichia coli
           O1:K1 / APEC GN=uxaB PE=3 SV=1
          Length = 483

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = -2

Query: 330 HYLQNHQRSWSEY------CKKLIASLTSKKDYMGPQLPQTCGL 217
           H+L+ +Q+ WS+Y       ++L+A + ++KD+    L Q  GL
Sbjct: 416 HWLERYQQLWSQYRDRVIGTQELVAIVLAEKDHWEQDLTQVPGL 459
tr_hit_id A8NNV5
Definition tr|A8NNV5|A8NNV5_BRUMA Putative uncharacterized protein OS=Brugia malayi
Align length 117
Score (bit) 37.4
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912467|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H06.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NNV5|A8NNV5_BRUMA Putative uncharacterized protein OS=Brugi...    37   0.50 
tr|Q4UG20|Q4UG20_THEAN Putative uncharacterized protein OS=Theil...    36   1.1  
tr|Q4N9Q6|Q4N9Q6_THEPA Putative uncharacterized protein OS=Theil...    36   1.4  
tr|B3PPX8|B3PPX8_RHIE6 Hypothetical conserved protein OS=Rhizobi...    34   5.5  
tr|A7CZ01|A7CZ01_9BACT Glycoside hydrolase clan GH-D OS=Opitutac...    34   5.5  
tr|Q1WIR9|Q1WIR9_DAUCA PIF-like orf1 OS=Daucus carota PE=4 SV=1        34   5.5  
tr|Q1WIR7|Q1WIR7_DAUCA Truncated PIF-like orf1 OS=Daucus carota ...    34   5.5  
tr|Q17961|Q17961_CAEEL Protein C14B1.2, confirmed by transcript ...    33   7.2  

>tr|A8NNV5|A8NNV5_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_06545 PE=4 SV=1
          Length = 1120

 Score = 37.4 bits (85), Expect = 0.50
 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
 Frame = -1

Query: 445 SDNNNVGMNHDACGSTHYYTETRTPYR----------------IRPQPISGSL-TTLFTK 317
           S +NNV + HD  G++H Y +  T  +                I+P  IS  L T    +
Sbjct: 245 SASNNVLVKHDNTGNSHIYNDVATASQSVKDSTEIDEVPVEALIQPTSISTLLPTDEIVQ 304

Query: 316 PSTELVRI-----LQKAHR-LFDLKEGLYGAATATNMWTSSDLSTSTFRIQNLLVSC 164
           P T L  I     LQK H   FD KE     A+ +  W   DL T    +   + +C
Sbjct: 305 PETALKSIDNIERLQKEHEDTFDAKEQAEVMASYSGQWNELDLDTDYADLSQDVTAC 361


>tr|Q4UG20|Q4UG20_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA19875 PE=4 SV=1
          Length = 1064

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 306 SWSEYCKKLIASLTSKKDYMGPQLPQTCGLRQIFPRQRFAY 184
           ++  Y   L+ASL  +K Y   +LPQT G +QIFP++   Y
Sbjct: 734 TYDPYANTLLASLLIRKSY---KLPQTAGTQQIFPKEAMQY 771


>tr|Q4N9Q6|Q4N9Q6_THEPA Putative uncharacterized protein
           OS=Theileria parva GN=TP01_0058 PE=4 SV=1
          Length = 339

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 306 SWSEYCKKLIASLTSKKDYMGPQLPQTCGLRQIFPRQRFAY 184
           ++  Y   L+ASL  +K Y   +LPQT G +QIFP++   Y
Sbjct: 9   TYDPYANTLLASLIIRKSY---KLPQTIGAQQIFPKEAMQY 46


>tr|B3PPX8|B3PPX8_RHIE6 Hypothetical conserved protein OS=Rhizobium
           etli (strain CIAT 652) GN=RHECIAT_CH0002454 PE=4 SV=1
          Length = 364

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 421 NHDACGSTHYYTETRTPYRIRPQPISGSLTTLFTKPSTE 305
           N  AC  T YY E R+   +   P  GS+TT+ T P T+
Sbjct: 272 NTCACNLTAYYEEMRSKQAVGEPPPQGSITTIRTNPPTK 310


>tr|A7CZ01|A7CZ01_9BACT Glycoside hydrolase clan GH-D OS=Opitutaceae
           bacterium TAV2 GN=ObacDRAFT_1152 PE=4 SV=1
          Length = 720

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
 Frame = -1

Query: 352 PISGSLTTLFTKPSTELV------RILQ---KAHRLFDLKEGLYGA-ATATNMWTSSDLS 203
           P+ G  T+ F +P+ E+       RIL    K HR+   K  L G  AT T    ++D  
Sbjct: 57  PVHG--TSDFREPALEVYQPANGSRILDLRYKTHRITPGKPALAGLPATFTRTGHTTDAE 114

Query: 202 TSTFRIQNLLVSCEVEMSWIASTSHVFCDLSLSKINYGK 86
           T T  + + L   EVE+ + A  +H     S    N+GK
Sbjct: 115 TLTLVLADALTGLEVELLYTAFAAHPIITRSARITNHGK 153


>tr|Q1WIR9|Q1WIR9_DAUCA PIF-like orf1 OS=Daucus carota PE=4 SV=1
          Length = 353

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 163 EVEMSWIASTSHVFCDLSLSKINYGKKPN 77
           + +  W  +T+H+FCD+ +S IN G +P+
Sbjct: 42  KTKAKWTLNTTHIFCDVCISAINKGLRPS 70


>tr|Q1WIR7|Q1WIR7_DAUCA Truncated PIF-like orf1 OS=Daucus carota
           PE=4 SV=1
          Length = 278

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 163 EVEMSWIASTSHVFCDLSLSKINYGKKPN 77
           + +  W  +T+H+FCD+ +S IN G +P+
Sbjct: 42  KTKAKWTLNTTHIFCDVCISAINKGLRPS 70


>tr|Q17961|Q17961_CAEEL Protein C14B1.2, confirmed by transcript
           evidence OS=Caenorhabditis elegans GN=C14B1.2 PE=1 SV=1
          Length = 198

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -1

Query: 289 QKAHRLFDLKEGLYGAATATNMWTSSDLSTSTFRIQNLLVSCEVEMSWI-ASTSHVFCDL 113
           +K   +FD   GL+G +TAT+  +S  L T+  + +   +   V ++ I  +  +VF  +
Sbjct: 55  EKTRGMFDSVTGLFGKSTATSRRSSDGLMTNLKKDEATRIWFAVYLNIILVALIYVFITI 114

Query: 112 SLSKINYGKKPNHQQSLVQFVNHAPFD-----VPVTSNQT 8
            L+ ++  +    ++    F +H  +D     VP+TS  T
Sbjct: 115 KLALMSLSEGKTERKKRNTFSSHVAYDSPDYNVPLTSIAT 154