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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912469
Clone id YMU001_000019_G12
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCGGCCGCGAATGGACACTCACATATAGACCATGTTTCCTTCTTTA
TGGGTTAATATACATAATGACCAAAGTCTAAAATACAATATGGTTATGGGATCAATAATT
CCATCCGACTCCAGGAATGTTACTCCTTGTGAAAATAATCCACTGTAGGTTTATTAGTTC
CCTGTCCTTAGGGAACCGTGTGCTCGGTCTGCGAGCTGAATATCACTAGACTGTTGCATA
TTCTCTGGGAGCAGTGGGCCAGTTGCGCAGGGCATCCATTTTATTGACGCATGGCAAAAT
TAGGATCTTCATCAATCAGCAAATCGCATTCAGAGGTAGCCAGCTTGCAAATAACAAGTA
GTGCAACAAATTTGATGGTACAAGTGATCCATACGACCATGTTGCCTATTTCCAACAAGT
GGTCTAAGCTGAAAGAGTAAGTGAGGCAGGGAGCTATACGTACTCCTGTTTAAAAGGAGC
CCTGGTCGCTCCATTAGTTACCCAAGCCCAGTACAAACAGGCAGCCACAGCAACTGCTGT
TGTCGACAGACAGGCAAGAGCACCAAAATGTGAGACGTCGTTTGCAGCAA
■■Homology search results ■■ -
sp_hit_id Q9UGL1
Definition sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapiens
Align length 34
Score (bit) 30.4
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912469|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G12.
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapien...    30   6.3  
sp|P47950|CYT4_NEUCR Mitochondrial protein cyt-4 OS=Neurospora c...    30   8.2  

>sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapiens
            GN=JARID1B PE=1 SV=2
          Length = 1544

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 422  RELY-VLLFKRSPGRSISYPSPVQTGSHSNCCCR 520
            +ELY  LL K SP +     SPV+  S  N CCR
Sbjct: 1364 QELYQTLLAKPSPAQQTDRSSPVRPSSEKNDCCR 1397


>sp|P47950|CYT4_NEUCR Mitochondrial protein cyt-4 OS=Neurospora
           crassa GN=cyt-4 PE=3 SV=1
          Length = 1117

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 467 WSDQGSF*TGVRIAPCLTYSFSLDHLLEIGNMVVW 363
           WS  G      R+ P  TYS+S D L  IG + +W
Sbjct: 435 WSSHGMLGPTTRVLPASTYSWSQDALTVIGVIHMW 469
tr_hit_id Q65XT5
Definition tr|Q65XT5|Q65XT5_ORYSJ Putative uncharacterized protein P0033D06.13 OS=Oryza sativa subsp. japonica
Align length 31
Score (bit) 42.0
E-value 0.023
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912469|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_G12.
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q65XT5|Q65XT5_ORYSJ Putative uncharacterized protein P0033D06...    42   0.023
tr|B8AXL9|B8AXL9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.023
tr|A3AZM6|A3AZM6_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.023
tr|A2Y023|A2Y023_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.023
tr|A9TF85|A9TF85_PHYPA Predicted protein (Fragment) OS=Physcomit...    41   0.051
tr|A9TEN8|A9TEN8_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.067
tr|Q2QNK7|Q2QNK7_ORYSJ Os12g0562100 protein OS=Oryza sativa subs...    39   0.25 
tr|Q2QNK6|Q2QNK6_ORYSJ cDNA clone:J013042H16, full insert sequen...    39   0.25 
tr|B8BMI3|B8BMI3_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.25 
tr|A3CIG2|A3CIG2_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.25 
tr|A9TER8|A9TER8_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.3  
tr|A7PRQ4|A7PRQ4_VITVI Chromosome chr14 scaffold_27, whole genom...    35   3.7  
tr|A5AS54|A5AS54_VITVI Putative uncharacterized protein OS=Vitis...    34   4.8  

>tr|Q65XT5|Q65XT5_ORYSJ Putative uncharacterized protein P0033D06.13
           OS=Oryza sativa subsp. japonica GN=P0033D06.13 PE=4 SV=1
          Length = 579

 Score = 42.0 bits (97), Expect = 0.023
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           A+D SHFGALA LS TAV  AA +Y  W+ N
Sbjct: 538 ASDASHFGALAALSATAVTAAAGMYCRWLAN 568


>tr|B8AXL9|B8AXL9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18327 PE=4 SV=1
          Length = 605

 Score = 42.0 bits (97), Expect = 0.023
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           A+D SHFGALA LS TAVA A  +Y  W+ N
Sbjct: 562 ASDASHFGALAALSATAVAAATGMYCRWLAN 592


>tr|A3AZM6|A3AZM6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016248 PE=4 SV=1
          Length = 593

 Score = 42.0 bits (97), Expect = 0.023
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           A+D SHFGALA LS TAV  AA +Y  W+ N
Sbjct: 552 ASDASHFGALAALSATAVTAAAGMYCRWLAN 582


>tr|A2Y023|A2Y023_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18330 PE=4 SV=1
          Length = 593

 Score = 42.0 bits (97), Expect = 0.023
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           A+D SHFGALA LS TAV  AA +Y  W+ N
Sbjct: 552 ASDASHFGALAALSATAVTAAAGMYCRWLAN 582


>tr|A9TF85|A9TF85_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_144722 PE=4 SV=1
          Length = 492

 Score = 40.8 bits (94), Expect = 0.051
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           ANDV +FG LA LS  AV  AA +YW W+ N
Sbjct: 427 ANDVKYFGHLAALSMAAVVGAAWIYWHWLAN 457


>tr|A9TEN8|A9TEN8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_144496 PE=4 SV=1
          Length = 495

 Score = 40.4 bits (93), Expect = 0.067
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           ANDV +FG LA LS  +V  AA +YW W+ N
Sbjct: 431 ANDVKYFGGLAALSMASVVGAAWIYWHWLAN 461


>tr|Q2QNK7|Q2QNK7_ORYSJ Os12g0562100 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0562100 PE=2 SV=1
          Length = 591

 Score = 38.5 bits (88), Expect = 0.25
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           ANDVSHFG LA LS ++VA AA ++  W+ N
Sbjct: 541 ANDVSHFGFLAILSVSSVAGAAWMFCQWLGN 571


>tr|Q2QNK6|Q2QNK6_ORYSJ cDNA clone:J013042H16, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g37530 PE=2
           SV=1
          Length = 591

 Score = 38.5 bits (88), Expect = 0.25
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           ANDVSHFG LA LS ++VA AA ++  W+ N
Sbjct: 541 ANDVSHFGFLAILSVSSVAGAAWMFCQWLGN 571


>tr|B8BMI3|B8BMI3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38730 PE=4 SV=1
          Length = 614

 Score = 38.5 bits (88), Expect = 0.25
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           ANDVSHFG LA LS ++VA AA ++  W+ N
Sbjct: 541 ANDVSHFGFLAILSVSSVAGAAWMFCQWLGN 571


>tr|A3CIG2|A3CIG2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035084 PE=4 SV=1
          Length = 575

 Score = 38.5 bits (88), Expect = 0.25
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = -3

Query: 559 ANDVSHFGALACLSTTAVAVAACLYWAWVTN 467
           ANDVSHFG LA LS ++VA AA ++  W+ N
Sbjct: 502 ANDVSHFGFLAILSVSSVAGAAWMFCQWLGN 532