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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912470
Clone id YMU001_000019_H01
Library
Length 466
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGGAAGGAAGAGCAAGTATGGGTGCTTCCATTTCTCACCATTGCTTTTGCTGCATTTCA
TTTGGGTTATTGCATTGCAATATGGATGAAAGATGAGTCGTTTGATTTTGAGTTTTTTCG
CACTGGCATTGGACTTCTCTGCCTACTAGCCTTGGCGGCAATTCGTTTAAACAACCGAAC
AGGAATGGATGCCTACCTTCTGGGTTTGGGAGCATCTGTTGGGGTGATGCTTTGGACAGG
TGAACGGTGCTTGGTGAACAAAGAAGGCAGTCCAGCTGGAATAGTTTCATTCTTTGCTGC
TGCAATGGCTGCTCTGTTTTCTACTGCAATTCATGAGACAATACGTCGGCGCTTCTAGAA
TCATCGTGGCTCGGTTAAGTGCGACATCTACGCTATCTTGACACTATAGCCTGCTGGAGT
ATTACTGGATTGTACAAAAGCTCTTAGTAGCAGCAGAATGCTGACA
■■Homology search results ■■ -
sp_hit_id Q60952
Definition sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus
Align length 93
Score (bit) 33.1
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912470|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H01.
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mu...    33   0.60 
sp|Q60793|KLF4_MOUSE Krueppel-like factor 4 OS=Mus musculus GN=K...    31   3.0  
sp|Q2I689|PLAL1_PIG Zinc finger protein PLAGL1 OS=Sus scrofa GN=...    30   3.9  
sp|Q9UM63|PLAL1_HUMAN Zinc finger protein PLAGL1 OS=Homo sapiens...    30   3.9  
sp|A0JNN6|CI169_BOVIN UPF0574 protein C9orf169 homolog OS=Bos ta...    30   5.2  
sp|Q5VU43|MYOME_HUMAN Myomegalin OS=Homo sapiens GN=PDE4DIP PE=2...    30   6.7  
sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus m...    30   6.7  
sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=ar...    30   6.8  
sp|Q6AZ54|HEMGN_RAT Hemogen OS=Rattus norvegicus GN=Hemgn PE=1 SV=1    29   8.7  
sp|Q5KL31|IML1_CRYNE Vacuolar membrane-associated protein IML1 O...    29   8.9  

>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus
            musculus GN=Cep250 PE=1 SV=3
          Length = 2414

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = -3

Query: 305  LQQQRMKLFQLDCLLCSPSTVHLSKASPQQMLPNPEGRHPFLFGCLNELPPRLVGREVQC 126
            +Q  + +L  L+CL       H    S Q+M+   EG+       L  L   L  R  + 
Sbjct: 1537 IQDLKKQLGTLECLALELEESHHKVESQQKMITELEGQREMQRVALTHLTLDLEERSQEL 1596

Query: 125  QCEKTQ-----NQTTHLSSILQCNNPNEMQQKQ 42
            Q + +Q     N +THL+  LQ  +     Q+Q
Sbjct: 1597 QAQSSQLHELENHSTHLAKELQERDQEVTSQRQ 1629


>sp|Q60793|KLF4_MOUSE Krueppel-like factor 4 OS=Mus musculus GN=Klf4
           PE=2 SV=3
          Length = 483

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 257 SPSTVHLSKASPQQMLPNPEGRHPFLFGCLNELPPRL---VGREVQCQCEKTQNQTTHLS 87
           SPS + +SK SP       +G HP +    +  PPR+   + +E    C  +++   HLS
Sbjct: 241 SPSVISVSKGSP-------DGSHPVVVAPYSGGPPRMCPKIKQEAVPSCTVSRSLEAHLS 293

Query: 86  SILQCNN 66
           +  Q +N
Sbjct: 294 AGPQLSN 300


>sp|Q2I689|PLAL1_PIG Zinc finger protein PLAGL1 OS=Sus scrofa
           GN=PLAGL1 PE=2 SV=1
          Length = 463

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 131 QC-QCEKTQNQTTHLSSILQCNNPNEM 54
           QC  CEKT N+  HL + LQ ++PN+M
Sbjct: 63  QCAHCEKTFNRKDHLKNHLQTHDPNKM 89


>sp|Q9UM63|PLAL1_HUMAN Zinc finger protein PLAGL1 OS=Homo sapiens
           GN=PLAGL1 PE=2 SV=2
          Length = 463

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 131 QC-QCEKTQNQTTHLSSILQCNNPNEM 54
           QC  CEKT N+  HL + LQ ++PN+M
Sbjct: 63  QCAHCEKTFNRKDHLKNHLQTHDPNKM 89


>sp|A0JNN6|CI169_BOVIN UPF0574 protein C9orf169 homolog OS=Bos
           taurus PE=2 SV=1
          Length = 126

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 1   GEGRASMGASISHHCFCCISFGLLHC 78
           G   A  G  I+HHC+CC      HC
Sbjct: 87  GPPPAQRGDDIAHHCWCCPCCSCCHC 112


>sp|Q5VU43|MYOME_HUMAN Myomegalin OS=Homo sapiens GN=PDE4DIP PE=2
           SV=1
          Length = 2346

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 25/99 (25%), Positives = 45/99 (45%)
 Frame = -3

Query: 338 SHELQ*KTEQPLQQQRMKLFQLDCLLCSPSTVHLSKASPQQMLPNPEGRHPFLFGCLNEL 159
           S E+Q  TE+ L+QQ++   +      S S  HL  A  Q+ +   E  +  L   LNE+
Sbjct: 208 SMEVQPMTEELLKQQKLNSHETTITQQSVSDSHL--AELQEKIQQTEATNKILQEKLNEM 265

Query: 158 PPRLVGREVQCQCEKTQNQTTHLSSILQCNNPNEMQQKQ 42
                  E++C  E +Q Q   + ++ +     E + ++
Sbjct: 266 -----SYELKCAQESSQKQDGTIQNLKETLKSRERETEE 299


>sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus
           musculus GN=Fancl PE=1 SV=1
          Length = 375

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 281 FQLDCLLCSPSTVHLSKASPQQMLPNPEGRHPFLFGCLNE 162
           F +DC +C     HL+ A P Q+  NP+   PF   CL E
Sbjct: 303 FSMDCGICYAR--HLNGAIPDQVCNNPQCGQPFHEICLYE 340


>sp|Q9V1H6|AROK_PYRAB Shikimate kinase OS=Pyrococcus abyssi GN=aroK
           PE=3 SV=1
          Length = 274

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 179 TGMDAYLLGLGASVGVMLWTGERCLVNKEGSPAG 280
           T ++A+  G GA++G+ LWT  R  V  +G   G
Sbjct: 12  TIVNAFATGKGAAIGIELWTEARVRVTGDGEVRG 45


>sp|Q6AZ54|HEMGN_RAT Hemogen OS=Rattus norvegicus GN=Hemgn PE=1 SV=1
          Length = 514

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
 Frame = -3

Query: 260 CSPSTVHLSKASPQQMLPNPEGRHPFL-----FGCLNELPPRLVGREVQCQCEKTQNQTT 96
           CSP T+  S  +P  + P     HP L      GC +E    +V  ++  +        T
Sbjct: 332 CSPKTLPQSDVTPMSVTPGKNTSHPDLGTAVAEGCFSEAGECIVSEDISTK--------T 383

Query: 95  HLSSILQCNNPNEMQQKQW*EMEAPILA 12
           H  ++     P  +  K + E   PI++
Sbjct: 384 HQEAV----EPKFLSHKTYKEFTVPIVS 407


>sp|Q5KL31|IML1_CRYNE Vacuolar membrane-associated protein IML1
           OS=Cryptococcus neoformans GN=IML1 PE=3 SV=1
          Length = 1768

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = -2

Query: 273 GLPSLFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQRSPMPVRKNSKSN-- 100
           G P    +  SPV  + PT     R     P+     +   AS +RSP P R++ +SN  
Sbjct: 733 GSPITMARSISPVPPLPPT-----REQGDSPLSPVDSLPLSASVERSPSPSRRSVRSNMT 787

Query: 99  DSSFIHIAMQ*PK*NAAKAM 40
           D   +      PK   AK++
Sbjct: 788 DREHLGSGASTPKGTPAKSL 807
tr_hit_id A9U3Z5
Definition tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 94
Score (bit) 130.0
E-value 4.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912470|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H01.
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten...   130   4e-29
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten...   122   1e-26
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea...   114   2e-24
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten...   106   7e-22
tr|B4J0F8|B4J0F8_DROGR GH16462 OS=Drosophila grimshawi GN=GH1646...    36   0.83 
tr|B4PQ76|B4PQ76_DROYA GE23832 OS=Drosophila yakuba GN=GE23832 P...    35   1.8  
tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family OS...    33   5.5  
tr|Q9SEE9|Q9SEE9_ARATH Arginine/serine-rich protein OS=Arabidops...    33   5.5  
tr|Q94AS1|Q94AS1_ARATH Putative arginine/serine-rich protein OS=...    33   5.5  
tr|Q5E925|Q5E925_ARATH At1g16610 OS=Arabidopsis thaliana PE=2 SV=1     33   5.5  
tr|B7ZCN4|B7ZCN4_MOUSE Centrosomal protein 250 (Fragment) OS=Mus...    33   7.0  
tr|B2RWX5|B2RWX5_MOUSE Centrosomal protein 250 OS=Mus musculus G...    33   7.0  
tr|A3KGJ7|A3KGJ7_MOUSE Centrosomal protein 250 OS=Mus musculus G...    33   7.0  
tr|B4LBF0|B4LBF0_DROVI GJ13412 OS=Drosophila virilis GN=GJ13412 ...    33   7.0  
tr|A2F0L8|A2F0L8_TRIVA Putative uncharacterized protein OS=Trich...    33   7.2  
tr|A3NEL1|A3NEL1_BURP6 Transcriptional regulator, AraC family OS...    33   9.4  

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
          Length = 262

 Score =  130 bits (326), Expect = 4e-29
 Identities = 61/94 (64%), Positives = 71/94 (75%)
 Frame = +2

Query: 8   EEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFFRTXXXXXXXXXXXXXXXXXXTGM 187
           EE +++LP LT+AFAAFHLGYCIAIW+KDES DFEFFRT                  TG+
Sbjct: 151 EEHIFLLPILTLAFAAFHLGYCIAIWVKDESLDFEFFRTGLGLFGLLALAAVRLNARTGI 210

Query: 188 DAYLLGLGASVGVMLWTGERCLVNKEGSPAGIVS 289
           DAY+LGLGASVGVM+WTGERCLV +EG PAGIV+
Sbjct: 211 DAYILGLGASVGVMVWTGERCLVKREGHPAGIVA 244


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
          Length = 258

 Score =  122 bits (305), Expect = 1e-26
 Identities = 55/91 (60%), Positives = 69/91 (75%)
 Frame = +2

Query: 17  VWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFFRTXXXXXXXXXXXXXXXXXXTGMDAY 196
           V++LP LT+AFAAFHLGYCIA+W+KD++ DFEF RT                  TG+DAY
Sbjct: 150 VFLLPMLTLAFAAFHLGYCIAVWVKDDNLDFEFLRTGLGLFGLLAVSAFRLNTRTGIDAY 209

Query: 197 LLGLGASVGVMLWTGERCLVNKEGSPAGIVS 289
           +LGLGAS+GVM+WTGERCLV KEG+PAG+V+
Sbjct: 210 ILGLGASLGVMVWTGERCLVKKEGNPAGVVA 240


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 264

 Score =  114 bits (286), Expect = 2e-24
 Identities = 52/96 (54%), Positives = 69/96 (71%)
 Frame = +2

Query: 2   GKEEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFFRTXXXXXXXXXXXXXXXXXXT 181
           G+EE +++LP LT+AFAAF+LGYCIA+W+KD++ D +F RT                  T
Sbjct: 151 GEEEHLFLLPLLTLAFAAFNLGYCIAVWVKDDNMDNDFLRTGCGLFCLLVLAAIRLNNRT 210

Query: 182 GMDAYLLGLGASVGVMLWTGERCLVNKEGSPAGIVS 289
           G+DAY+LGLGASVGVM+W GERC V +E +PAGIV+
Sbjct: 211 GIDAYILGLGASVGVMVWAGERCFVKRESNPAGIVA 246


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
          Length = 249

 Score =  106 bits (264), Expect = 7e-22
 Identities = 47/94 (50%), Positives = 66/94 (70%)
 Frame = +2

Query: 8   EEQVWVLPFLTIAFAAFHLGYCIAIWMKDESFDFEFFRTXXXXXXXXXXXXXXXXXXTGM 187
           ++ +++LP LT+AFAAFHLGYCIAIW+KD+  + EF RT                  TG 
Sbjct: 138 DDHIFLLPMLTLAFAAFHLGYCIAIWVKDDGLNLEFIRTGLGLFFLLAVSALRLNVETGK 197

Query: 188 DAYLLGLGASVGVMLWTGERCLVNKEGSPAGIVS 289
           DA++LG+ +S+GVM+WTGERCL+ +EGS AG+V+
Sbjct: 198 DAHVLGIVSSLGVMVWTGERCLIKREGSLAGVVA 231


>tr|B4J0F8|B4J0F8_DROGR GH16462 OS=Drosophila grimshawi GN=GH16462
            PE=4 SV=1
          Length = 1250

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -3

Query: 242  HLSKASPQQMLPNPEGRHPFLFGCLNELPPRLVGREVQCQCEKTQNQTTHLSSILQCNNP 63
            H  +A P  ++ +P G  P L    N+LPP      +Q Q ++ Q Q      + Q +  
Sbjct: 1132 HSHQAPPGHLMHSPHGGPPMLLTTANQLPPPTTPHHMQQQQQQQQQQQQQQQPLPQVSPG 1191

Query: 62   NEMQQKQ 42
             + QQ Q
Sbjct: 1192 RQQQQPQ 1198


>tr|B4PQ76|B4PQ76_DROYA GE23832 OS=Drosophila yakuba GN=GE23832 PE=4
           SV=1
          Length = 2970

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 29/100 (29%), Positives = 43/100 (43%)
 Frame = -3

Query: 341 LSHELQ*KTEQPLQQQRMKLFQLDCLLCSPSTVHLSKASPQQMLPNPEGRHPFLFGCLNE 162
           +  + Q +  QP+QQQ+   F  +  +   ST    KA PQQ+LP P+           E
Sbjct: 339 IQQQQQQQQPQPVQQQQQHRFVSNAGVTGMSTGKTGKA-PQQILPKPQ----------QE 387

Query: 161 LPPRLVGREVQCQCEKTQNQTTHLSSILQCNNPNEMQQKQ 42
           L  +        Q  ++  QT       Q NNP + QQ+Q
Sbjct: 388 LQQQKKSTNGGAQISQSAQQTG------QANNPTQQQQQQ 421


>tr|B7D0H4|B7D0H4_BURPS Transcriptional regulator, AraC family
           OS=Burkholderia pseudomallei 576 GN=BUC_4083 PE=4 SV=1
          Length = 118

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 279 PAGLPSLFTKHRSP--VQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQRS 133
           P G P+ +TK RSP  VQ  TPT    PR       R  K+ AA+ +R  S
Sbjct: 68  PPGEPAAYTKRRSPRFVQRATPTPQASPRAAHPARPRPEKKAAARLNRSSS 118


>tr|Q9SEE9|Q9SEE9_ARATH Arginine/serine-rich protein OS=Arabidopsis
           thaliana GN=SR45 PE=1 SV=1
          Length = 414

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 294 KNETIPAGLPSLFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQRSPMPVRK 115
           + +T P   P+  ++ RSP        +P PRR  S P    +RI     R+RSP+P+R+
Sbjct: 261 RGDTPPRRRPASPSRGRSP-------SSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRR 313

Query: 114 NS 109
            S
Sbjct: 314 RS 315


>tr|Q94AS1|Q94AS1_ARATH Putative arginine/serine-rich protein
           OS=Arabidopsis thaliana GN=At1g16610 PE=2 SV=1
          Length = 414

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 294 KNETIPAGLPSLFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQRSPMPVRK 115
           + +T P   P+  ++ RSP        +P PRR  S P    +RI     R+RSP+P+R+
Sbjct: 261 RGDTPPRRRPASPSRGRSP-------SSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRR 313

Query: 114 NS 109
            S
Sbjct: 314 RS 315


>tr|Q5E925|Q5E925_ARATH At1g16610 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 407

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 294 KNETIPAGLPSLFTKHRSPVQSITPTDAPKPRR*ASIPVRLFKRIAAKASRQRSPMPVRK 115
           + +T P   P+  ++ RSP        +P PRR  S P    +RI     R+RSP+P+R+
Sbjct: 254 RGDTPPRRRPASPSRGRSP-------SSPPPRRYRSPPRGSPRRIRGSPVRRRSPLPLRR 306

Query: 114 NS 109
            S
Sbjct: 307 RS 308