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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912473
Clone id YMU001_000019_H04
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTGTTATTTTTGAATAGAAATCCACACCCAATACACGCTTCTATTTAGCCAAGT
TCCATACAAAAAGTTACTCCAGACAATTTAAAGGCCCGAGCTTGTATTTCATTCTAAAGC
TCAGATAGAACATGTAGAACCTCAACCACTCCTCCATTACACAGACCAATTAGAATGCAA
TTCCAGCTTATTACAATGCAGAATTTTACAAGGTCAACTATGCTAAATTAATGAAACAAA
GCATGCATCTCCAAATGCCCAATCCTTTCCTTCTTGGATATACAAATACTCAATCCCCCA
ATACCCAGTCAGCTAAATTCTCAACCCTACATTATGTATATCTTTCTATTCTGCCTGATC
AATGCACCAAAATATGCCAAACAGTTGTGCAATGTGGGGAACGATGCTGGAGCTGCCCAT
TTTGTTAGCGCGCGTTTCTGCCTCTCACCTCAAACTAAGTAAACTGTCTACCCTTAAGAA
ATTATAACCAGTCATCGTAAGCAATTACCTCCCGATTAGAAATGTCTACTG
■■Homology search results ■■ -
sp_hit_id Q9WRL7
Definition sp|Q9WRL7|DNBI_TUHV2 Major DNA-binding protein OS=Tupaiid herpesvirus (strain 2)
Align length 34
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912473|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H04.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WRL7|DNBI_TUHV2 Major DNA-binding protein OS=Tupaiid herpes...    33   1.0  
sp|P19838|NFKB1_HUMAN Nuclear factor NF-kappa-B p105 subunit OS=...    31   2.9  
sp|P25799|NFKB1_MOUSE Nuclear factor NF-kappa-B p105 subunit OS=...    31   3.8  
sp|Q6F3J0|NFKB1_CANFA Nuclear factor NF-kappa-B p105 subunit OS=...    31   3.8  
sp|Q04861|NFKB1_CHICK Nuclear factor NF-kappa-B p105 subunit OS=...    30   8.5  
sp|Q9ZKG9|SYM_HELPJ Methionyl-tRNA synthetase OS=Helicobacter py...    30   8.7  

>sp|Q9WRL7|DNBI_TUHV2 Major DNA-binding protein OS=Tupaiid
           herpesvirus (strain 2) GN=DBP PE=3 SV=1
          Length = 1193

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 227 CISKCPILSFLDIQILNPPIPSQLNSQPYIMYIF 328
           C   C   +F+ IQ   PP+P QL  +P+++ +F
Sbjct: 481 CCQSCYQTAFVRIQTRLPPLPKQLKREPFVLTLF 514


>sp|P19838|NFKB1_HUMAN Nuclear factor NF-kappa-B p105 subunit
           OS=Homo sapiens GN=NFKB1 PE=1 SV=2
          Length = 968

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 6   EIHTQYTLLFSQVPYKKLLQTI*RPELVF---HSKAQIEHVEPQPLLHYTD 149
           ++H Q+ ++F    YK +   I +P  VF     K+ +E  EP+P L+Y +
Sbjct: 304 DVHRQFAIVFKTPKYKDI--NITKPASVFVQLRRKSDLETSEPKPFLYYPE 352


>sp|P25799|NFKB1_MOUSE Nuclear factor NF-kappa-B p105 subunit OS=Mus
           musculus GN=Nfkb1 PE=1 SV=1
          Length = 971

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 6   EIHTQYTLLFSQVPYKKLLQTI*RPELVF---HSKAQIEHVEPQPLLHYTD 149
           ++H Q+ ++F    YK +   I +P  VF     K+ +E  EP+P L+Y +
Sbjct: 302 DVHRQFAIVFKTPKYKDV--NITKPASVFVQLRRKSDLETSEPKPFLYYPE 350


>sp|Q6F3J0|NFKB1_CANFA Nuclear factor NF-kappa-B p105 subunit
           OS=Canis familiaris GN=NFKB1 PE=2 SV=1
          Length = 972

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 6   EIHTQYTLLFSQVPYKKLLQTI*RPELVF---HSKAQIEHVEPQPLLHYTD 149
           ++H Q+ ++F    YK +   I +P  VF     K+ +E  EP+P L+Y +
Sbjct: 304 DVHRQFAIVFKTPKYKDV--NITKPTSVFVQLRRKSDLETSEPKPFLYYPE 352


>sp|Q04861|NFKB1_CHICK Nuclear factor NF-kappa-B p105 subunit
           OS=Gallus gallus GN=NFKB1 PE=2 SV=1
          Length = 984

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 6   EIHTQYTLLFSQVPYKKLLQTI*RPELVF---HSKAQIEHVEPQPLLHYTD 149
           ++H Q+ ++F    Y+ +   I +P  VF     K+ +E  EP+P L+Y +
Sbjct: 309 DVHRQFAIVFKTPKYRDV--NITKPASVFVQLRRKSDLETSEPKPFLYYPE 357


>sp|Q9ZKG9|SYM_HELPJ Methionyl-tRNA synthetase OS=Helicobacter
           pylori J99 GN=metG PE=3 SV=1
          Length = 656

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 281 PIPSQLNSQPYIMYIFLFCLINAPKYAKQLCNV-GNDAGAAHFVSAR 418
           P+P ++N   +++Y++L  L+N   YA  L  + G D   AHF  AR
Sbjct: 216 PLPKKMNDPKHVVYVWLDALLN---YASALGYLNGLDNKMAHFERAR 259
tr_hit_id Q056F1
Definition tr|Q056F1|Q056F1_LEPBL Putative uncharacterized protein OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)
Align length 29
Score (bit) 33.1
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912473|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H04.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q056F1|Q056F1_LEPBL Putative uncharacterized protein OS=Lepto...    33   8.3  
tr|Q04P83|Q04P83_LEPBJ Putative uncharacterized protein OS=Lepto...    33   8.3  
tr|B8N2C0|B8N2C0_ASPFL C6 transcription factor, putative OS=Aspe...    33   8.3  

>tr|Q056F1|Q056F1_LEPBL Putative uncharacterized protein
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain L550) GN=LBL_0177 PE=4 SV=1
          Length = 522

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 254 FLDIQILNPPIPSQLNSQPYIMYIFLFCL 340
           FLD + +NPPIP   NS+P+    FLF L
Sbjct: 324 FLDFESINPPIPVYPNSRPFQHVPFLFSL 352


>tr|Q04P83|Q04P83_LEPBJ Putative uncharacterized protein
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain JB197) GN=LBJ_2886 PE=4 SV=1
          Length = 522

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +2

Query: 254 FLDIQILNPPIPSQLNSQPYIMYIFLFCL 340
           FLD + +NPPIP   NS+P+    FLF L
Sbjct: 324 FLDFESINPPIPVYPNSRPFQHVPFLFSL 352


>tr|B8N2C0|B8N2C0_ASPFL C6 transcription factor, putative
           OS=Aspergillus flavus NRRL3357 GN=AFLA_036050 PE=4 SV=1
          Length = 547

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +1

Query: 172 YYNAEFYKVNYAKLMKQSMHLQMPNPFLLGYTNTQSPNTQSAKFSTLHYVYLSILPDQCT 351
           Y++  F + ++ ++   S+ +Q     +L  ++ ++   ++     + Y Y+  + D C 
Sbjct: 304 YFDILFIEYHFVRVYTHSVGMQAVVERVLADSDPRAEEVRALNIDPIDYEYIQEVIDGCC 363

Query: 352 KICQTVVQCGER--CWSCPFC*RAFLPLTSN 438
           +I Q V+Q  E      CP   R FL +TS+
Sbjct: 364 QILQKVIQLAENGVLRFCPV--RIFLRITSS 392