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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912480
Clone id YMU001_000019_H11
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACACAAACTCGACCAGACATACTTTGGCATTAAATCTTTTTATAGTTTTTACAAGAACT
CGTTCAGAGAGAAAATAGTTTGTGGCAAATTCCTTCTCCCACTTCCCTGAAAGTAATCTC
TCGTATATCTCTTACCCGTCAATGTTCCTGCGCGCATATCTCTTATCTGCCATGGACGAG
CCCATGGGTGCGCTGGAAATTCATGGCCTCGACAGTGCAGCGAGACTCTGTGTCATCTGC
GCCTTGCCTGCTTCCCCCACCTGGCTTGCATCAAAAGTTTGCAGCATGTGGTCTCAGCCT
GCTGTTCTATCCTTTGCCAATGCCATGGCACAAGCATCGTCATCCTCCGGCTGCAACAGC
AACAGCAACTGCCTCCTCCCTTGCTCTCGCGTCTCAAAAACTCCTGCAGGCAGACCTACG
CTCCTCGCCTCCAGCATATCAGAGAGTGTTACACGCACGTCAGGAGTGCCAAATGGCTCA
TTTGTTGCAACAGACGATTGGGCGCCTGTACCTATATTGCTATCAGCCCCGGGACTTTGC
CCAAGGGCTCTTGTCTTCACATTCTGAATAGCTCTGGCATCACTACCTTCCAGTGTTGAT
TCACC
■■Homology search results ■■ -
sp_hit_id P09444
Definition sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum
Align length 74
Score (bit) 38.1
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912480|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H11.
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34 O...    38   0.035
sp|Q9ES38|S27A5_RAT Bile acyl-CoA synthetase OS=Rattus norvegicu...    33   1.5  
sp|P28886|FUS_PHODV Fusion glycoprotein F0 OS=Phocine distemper ...    31   4.3  
sp|Q9P383|YOJ1_SCHPO Uncharacterized RNA-binding protein C13A2.0...    31   5.6  
sp|P12569|FUS_CDVO Fusion glycoprotein F0 OS=Canine distemper vi...    30   9.5  

>sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34
           OS=Gossypium hirsutum PE=4 SV=1
          Length = 264

 Score = 38.1 bits (87), Expect = 0.035
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G+  ++ SDA A+Q  + RA G +      +   AQS+ A N      + ++ L+ +L  
Sbjct: 152 GDKPVDQSDAAAVQAAEVRATGSNVIIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTG 211

Query: 425 RSVGLPAGVFETRE 384
            +  LPA    TR+
Sbjct: 212 ATAKLPADKAVTRQ 225


>sp|Q9ES38|S27A5_RAT Bile acyl-CoA synthetase OS=Rattus norvegicus
           GN=Slc27a5 PE=1 SV=1
          Length = 690

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
 Frame = +2

Query: 83  WQIPSPTSLKVISRISLTRQCSCAHISYLPWTSPWV-RWKFMASTVQRDSVSSAPCLLPP 259
           W +  PT   ++    L R          PW S W+  W  +A+     S+       PP
Sbjct: 35  WFLGDPTCFVLLGLAFLGR----------PWISSWIPHWLSLAAAALTLSLLPPR---PP 81

Query: 260 PGLH--QKFAACGLSLLFYPLPMPWHKHRHPP 349
           P L    K  A    LLFY L +    +RHPP
Sbjct: 82  PELRWLHKDVAFAFKLLFYGLNLRRRLNRHPP 113


>sp|P28886|FUS_PHODV Fusion glycoprotein F0 OS=Phocine distemper
           virus GN=F PE=3 SV=2
          Length = 537

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 270 IKSLQHVVSACCSILCQCHGTSIVI 344
           I S  ++++ C SILC+CH TS +I
Sbjct: 367 ILSKGNIIANCASILCKCHSTSKII 391


>sp|Q9P383|YOJ1_SCHPO Uncharacterized RNA-binding protein C13A2.01c
           OS=Schizosaccharomyces pombe GN=SPBC13A2.01c PE=2 SV=1
          Length = 182

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 293 DHMLQTFDASQVGEAGKAQMTQSLAALSRP*ISSAPMGSSM---ADKRYAR 150
           D M + FD  + G A   Q T S    +   ISSAP+GSS+   ++ RY R
Sbjct: 128 DEMREEFDPGRGGYAKNRQPTSSRQLANYSGISSAPLGSSLELQSNPRYNR 178


>sp|P12569|FUS_CDVO Fusion glycoprotein F0 OS=Canine distemper virus
           (strain Onderstepoort) GN=F PE=1 SV=1
          Length = 662

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 270 IKSLQHVVSACCSILCQCHGTSIVI 344
           I S  ++V+ C SILC+C+ TS +I
Sbjct: 492 ILSKGNIVANCASILCKCYSTSTII 516
tr_hit_id Q8GWT7
Definition tr|Q8GWT7|Q8GWT7_ARATH Putative embryonic abundant protein OS=Arabidopsis thaliana
Align length 74
Score (bit) 47.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912480|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_H11.
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8GWT7|Q8GWT7_ARATH Putative embryonic abundant protein OS=Ar...    47   7e-04
tr|Q9SA57|Q9SA57_ARATH F10O3.5 protein OS=Arabidopsis thaliana G...    45   0.003
tr|A7Q5T9|A7Q5T9_VITVI Chromosome chr14 scaffold_54, whole genom...    40   0.081
tr|A5AV43|A5AV43_VITVI Putative uncharacterized protein OS=Vitis...    40   0.081
tr|A7PUC2|A7PUC2_VITVI Chromosome chr7 scaffold_31, whole genome...    39   0.18 
tr|A5BCU4|A5BCU4_VITVI Putative uncharacterized protein OS=Vitis...    39   0.24 
tr|Q2Q4X9|Q2Q4X9_MEDTR Seed maturation protein OS=Medicago trunc...    39   0.31 
tr|A9TSW2|A9TSW2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.31 
tr|A7NWP0|A7NWP0_VITVI Chromosome chr5 scaffold_2, whole genome ...    39   0.31 
tr|Q9SEL0|Q9SEL0_SOYBN Seed maturation protein PM24 OS=Glycine m...    37   1.2  
tr|Q0VTN0|Q0VTN0_ALCBS Sensor protein OS=Alcanivorax borkumensis...    36   1.5  
tr|B0WL05|B0WL05_CULQU Transcription factor IIIB 90 kDa subunit ...    35   2.6  
tr|Q9LJ97|Q9LJ97_ARATH Seed maturation protein, LEA protein in g...    35   3.4  
tr|Q1Z0X1|Q1Z0X1_PHOPR Putative cation transport ATPase OS=Photo...    34   5.8  
tr|Q0SEP5|Q0SEP5_RHOSR Probable adenylate cyclase OS=Rhodococcus...    34   7.6  
tr|Q9LJ95|Q9LJ95_ARATH LEA protein in group 5 (At3g22500/F16J14_...    34   7.6  
tr|Q41850|Q41850_MAIZE Rab28 protein OS=Zea mays GN=rab28 PE=4 SV=1    34   7.6  
tr|A1C7L6|A1C7L6_ASPCL Putative uncharacterized protein OS=Asper...    34   7.6  
tr|Q96245|Q96245_ARATH LEA protein in group 5 OS=Arabidopsis tha...    33   9.9  

>tr|Q8GWT7|Q8GWT7_ARATH Putative embryonic abundant protein
           OS=Arabidopsis thaliana GN=At5g27980/F15F15_50 PE=2 SV=1
          Length = 192

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 26/74 (35%), Positives = 38/74 (51%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   +E SDA AIQ  + RA G++      +   AQS+   N   G+ D + TL+D+L  
Sbjct: 82  GNKPVEWSDAAAIQAAEVRATGRTNIMPGGVAASAQSAATLNARIGSDDTKTTLADVLTG 141

Query: 425 RSVGLPAGVFETRE 384
            S  LP+    TR+
Sbjct: 142 ASSKLPSDKAATRK 155


>tr|Q9SA57|Q9SA57_ARATH F10O3.5 protein OS=Arabidopsis thaliana
           GN=At1g03120 PE=4 SV=1
          Length = 182

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 24/74 (32%), Positives = 39/74 (52%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G+  ++  DA AIQ  +TRA G+S G    +   AQ++  TNE   + + +V ++D+L  
Sbjct: 72  GDKPVDRRDAAAIQAAETRATGESKGRPGGLAVAAQAAATTNEQTVSEEDKVNIADILTD 131

Query: 425 RSVGLPAGVFETRE 384
            +  LP     T E
Sbjct: 132 AAERLPGDKVVTSE 145


>tr|A7Q5T9|A7Q5T9_VITVI Chromosome chr14 scaffold_54, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031095001
           PE=4 SV=1
          Length = 263

 Score = 40.4 bits (93), Expect = 0.081
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   +E SDA A+Q  + RA G++  A   +G  AQS+   N      + +  L+D+L  
Sbjct: 146 GGKPVEWSDAAAVQAAEVRAAGRTTTAPGGVGAAAQSAATLNARTSRNEDKTKLADVLTD 205

Query: 425 RSVGLPAGVFETR 387
            S  LP     TR
Sbjct: 206 ASEKLPRDKAATR 218


>tr|A5AV43|A5AV43_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037455 PE=4 SV=1
          Length = 258

 Score = 40.4 bits (93), Expect = 0.081
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   ++ SDA AIQ  + RA G +  + + +   AQS+ + N      + ++ L+D+L  
Sbjct: 147 GNKPVDQSDAAAIQEAEVRATGSTIISPTGVAAAAQSAASMNTGLTRDEDKIKLTDVLSN 206

Query: 425 RSVGLPAGVFETRE 384
            +  LPA    TR+
Sbjct: 207 ATARLPADKAVTRQ 220


>tr|A7PUC2|A7PUC2_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023739001
           PE=4 SV=1
          Length = 259

 Score = 39.3 bits (90), Expect = 0.18
 Identities = 26/74 (35%), Positives = 34/74 (45%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   ++ SDA AIQ  + RA G S      I   AQS+  TN      + +  LSD+L  
Sbjct: 148 GNKPVDQSDAAAIQVAEMRATGSSEVVPGGIAAQAQSAATTNARLILDENKTKLSDILTD 207

Query: 425 RSVGLPAGVFETRE 384
            +  LP     TRE
Sbjct: 208 ATAKLPDDKPATRE 221


>tr|A5BCU4|A5BCU4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029641 PE=4 SV=1
          Length = 259

 Score = 38.9 bits (89), Expect = 0.24
 Identities = 26/74 (35%), Positives = 34/74 (45%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   ++ SDA AIQ  + RA G S      I   AQS+  TN      + +  LSD+L  
Sbjct: 148 GNKPVDQSDAAAIQVAEMRATGSSEVVPGGIAAQAQSAATTNARVILDENKTKLSDILTD 207

Query: 425 RSVGLPAGVFETRE 384
            +  LP     TRE
Sbjct: 208 ATAKLPDDKPATRE 221


>tr|Q2Q4X9|Q2Q4X9_MEDTR Seed maturation protein OS=Medicago
           truncatula GN=PM25 PE=2 SV=1
          Length = 260

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G+  +E SDA AIQ  + RA G +      + + AQS+ A N      + ++ + ++L  
Sbjct: 146 GDKPVEQSDASAIQAAEVRATGSNVITPGGLASMAQSAAAFNAECQREEEKIKMGNVLTG 205

Query: 425 RSVGLPAGVFETRE 384
            +  LPA    TR+
Sbjct: 206 ATAKLPADKAATRQ 219


>tr|A9TSW2|A9TSW2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_197917 PE=4 SV=1
          Length = 309

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 27/74 (36%), Positives = 38/74 (51%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G+  +E SDARAIQ+   RA G  P A S +   A S+   N      D + TL+D+L  
Sbjct: 138 GQRPVEDSDARAIQSAVARATGAPPTAGS-LAAAAMSAAELNPRVPNAD-KTTLADILMD 195

Query: 425 RSVGLPAGVFETRE 384
            ++ L A    T+E
Sbjct: 196 ATIDLEADKTVTQE 209


>tr|A7NWP0|A7NWP0_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020000001
           PE=4 SV=1
          Length = 258

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   ++ SD+ AIQ  + RA G +  + + +   AQS+ + N      + ++ L+D+L  
Sbjct: 147 GNKPVDQSDSAAIQAAEVRATGSTIISPTGVAAAAQSAASMNTGLTRDEDKIKLTDVLSN 206

Query: 425 RSVGLPAGVFETRE 384
            +  LPA    TR+
Sbjct: 207 ATARLPADKAVTRQ 220


>tr|Q9SEL0|Q9SEL0_SOYBN Seed maturation protein PM24 OS=Glycine max
           GN=PM24 PE=2 SV=1
          Length = 259

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 605 GESTLEGSDARAIQNVKTRALGQSPGADSNIGTGAQSSVATNEPFGTPDVRVTLSDMLEA 426
           G   ++ SDA AIQ  + RA G +      +   AQS+ A N        +V L+D+L  
Sbjct: 148 GHKPVDQSDASAIQTAEVRATGSNVITPGGLAAMAQSAAAYNADCKHDQDKVKLADVLTG 207

Query: 425 RSVGLPA 405
            +  LPA
Sbjct: 208 ATAKLPA 214