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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912481
Clone id YMU001_000019_A01
Library
Length 382
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAGCTGCAGGGGAGAATAGTAATCATGGGACCGGACACAGAGGCCCCCTTCATGTGGA
TCATAGTAAAGTTACGTGAGAGGAGTTTCATGTACATTGCTCCAGCCTTGGAGAGGTCTT
CCTCATTGGAGACTACAACAGGTGGACACAGAGCAAGCAATGCAGGGCATCAGCAGATAC
AGTGATATCCACAGCCTATGGACGAGACCTACTTAGACTAGTCACCTCACCGTCTCGTTA
GTTATGGCAAGATGGCCAAATGGCCAAACTCTGGAGGCCTCACTTGCACCCCAGCGTCAG
TCTCGAAGGTTGCATTCCACCATCCGTCTCAAAGGTTGCATCCCACCACCAGTCTCGAAG
AGGTAGTACAATGGAGTACATC
■■Homology search results ■■ -
sp_hit_id P24607
Definition sp|P24607|T801_PSESH Transposase for insertion sequence element IS801 OS=Pseudomonas syringae pv. phaseolicola
Align length 73
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912481|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_A01.
         (382 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24607|T801_PSESH Transposase for insertion sequence element ...    30   2.8  
sp|Q9NZ53|PDXL2_HUMAN Podocalyxin-like protein 2 OS=Homo sapiens...    30   2.8  
sp|Q975Z6|GATB_SULTO Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   3.7  
sp|Q5BL07|PEX1_MOUSE Peroxisome biogenesis factor 1 OS=Mus muscu...    30   3.7  
sp|Q924Z6|XPO6_MOUSE Exportin-6 OS=Mus musculus GN=Xpo6 PE=2 SV=2      29   6.3  
sp|Q28C22|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenas...    29   6.3  
sp|Q29FF7|MED14_DROPS Mediator of RNA polymerase II transcriptio...    29   6.3  

>sp|P24607|T801_PSESH Transposase for insertion sequence element
           IS801 OS=Pseudomonas syringae pv. phaseolicola PE=3 SV=1
          Length = 410

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +2

Query: 134 YNRWTQSKQCRASADTVISTAYGRDLLRLVTSPSR*LWQDGQMAKLWRPHLHPSVSLEGC 313
           YNRW      R +AD +I  A  R L   +      L   G+    W PH+H SV+  G 
Sbjct: 127 YNRWLLDALFRLAADNLIYAAKRRGLRVGIFGA---LHTYGRRLN-WHPHVHLSVTAGGL 182

Query: 314 IPPSVSKVASHHQ 352
               V K  S H+
Sbjct: 183 DEQGVWKNLSFHK 195


>sp|Q9NZ53|PDXL2_HUMAN Podocalyxin-like protein 2 OS=Homo sapiens
           GN=PODXL2 PE=1 SV=1
          Length = 605

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 18/84 (21%)
 Frame = +2

Query: 26  HGTGHRGPLHVDHSKVT*EEFHVHCSSLGE---------VFLIGDYNR---------WTQ 151
           HG+GH G  H+  SK + +E H+  + +GE         + ++GD  R         ++ 
Sbjct: 424 HGSGHHGAWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLGDIRRSLEEIGIQNYST 483

Query: 152 SKQCRASADTVISTAYGRDLLRLV 223
           +  C+A A  V S  YG   + LV
Sbjct: 484 TSSCQARASQVRSD-YGTLFVVLV 506


>sp|Q975Z6|GATB_SULTO Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Sulfolobus tokodaii
           GN=gatB PE=3 SV=1
          Length = 479

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +2

Query: 80  EEFHVHCSSLGEV--FLIGDYNRWTQSKQCRASADTVISTAYGRDLLRLVTSPSR*LWQD 253
           EE   H S+  ++   LI DY RW   K  R S     S A  + L+ L+      L  D
Sbjct: 333 EETAKHYSNYKKLVNLLINDYLRWLNDKNLRPSQ----SKAGSQHLVELLK-----LLDD 383

Query: 254 GQMAKLWRPHLHPSVSLEGCIPPSVSK 334
           G +       + P + LEG +P S+ K
Sbjct: 384 GVITIKIAKEILPEIVLEGKMPSSIIK 410


>sp|Q5BL07|PEX1_MOUSE Peroxisome biogenesis factor 1 OS=Mus musculus
           GN=Pex1 PE=1 SV=2
          Length = 1284

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
 Frame = +3

Query: 12  GRIVIMGPDTEAPFMWIIVKLRE-RSFMYIAPALE--------RSSSLETTTGGHRASNA 164
           G ++  GPD++    W  ++L   ++    A  LE        +  S  TTT    A++ 
Sbjct: 249 GSMLSFGPDSKQESAWGSLELGAFKNMQSQAAPLEGTFRVCQVQPPSARTTT----ATSV 304

Query: 165 GHQQIQ*YPQPMDETYLD*SPHRLVSYGKMAK 260
            H+    +  P D+ Y D  P   V+YGK+ K
Sbjct: 305 FHKHCTAHVFPWDQEYFDVEPSFTVTYGKLVK 336


>sp|Q924Z6|XPO6_MOUSE Exportin-6 OS=Mus musculus GN=Xpo6 PE=2 SV=2
          Length = 1125

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 79  RGVSCTLLQPWRGLP----HWRLQQVDTEQAMQGISRYSDIHSL 198
           R +S TLL PW  LP     W L+ ++    +  +SR  D HSL
Sbjct: 724 RALSNTLLLPWPNLPESEQQWPLRSINHASLISALSR--DYHSL 765


>sp|Q28C22|OGFD2_XENTR 2-oxoglutarate and iron-dependent oxygenase
           domain-containing protein 2 OS=Xenopus tropicalis
           GN=ogfod2 PE=2 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 80  EEFHVHCSSLGEVFLIGDYNRWTQSKQCRAS 172
           +EFHVH    GE     DY R   S+ CR S
Sbjct: 22  QEFHVHVRYTGEQQFRRDYERVLSSQGCRTS 52


>sp|Q29FF7|MED14_DROPS Mediator of RNA polymerase II transcription
           subunit 14 OS=Drosophila pseudoobscura pseudoobscura
           GN=MED14 PE=3 SV=2
          Length = 1546

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 122 LIGDYNRWTQSKQCRASADTVISTAYGRDLLRLVTSPSR*LWQDGQMAKLWRPHLHPSVS 301
           L+ +   W   ++C  +   + +TA   D L  +T P + L Q G+     + H HP++ 
Sbjct: 471 LLSELRYWITHRRCEKTLQHLPATA--TDTLTFLTQPEQELLQQGRHKIYVKLHRHPNII 528

Query: 302 L 304
           L
Sbjct: 529 L 529
tr_hit_id Q160Q3
Definition tr|Q160Q3|Q160Q3_ROSDO Oxidoreductase, putative OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
Align length 47
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912481|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_A01.
         (382 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q160Q3|Q160Q3_ROSDO Oxidoreductase, putative OS=Roseobacter d...    37   0.65 
tr|A9H5A8|A9H5A8_9RHOB Oxidoreductase, putative OS=Roseobacter l...    37   0.65 
tr|A4EPC1|A4EPC1_9RHOB Oxidoreductase, NAD-binding/iron-sulfur c...    36   0.85 
tr|A3X3Z8|A3X3Z8_9RHOB Oxidoreductase, NAD-binding/iron-sulfur c...    36   1.1  
tr|A4EIS8|A4EIS8_9RHOB Oxidoreductase, NAD-binding/iron-sulfur c...    35   1.4  
tr|Q1GLB9|Q1GLB9_SILST Reductive dehalogenase OS=Silicibacter sp...    35   1.9  
tr|B7QYT8|B7QYT8_9RHOB Putative reductive dehalogenase subfamily...    35   1.9  
tr|A9FWA7|A9FWA7_9RHOB Reductive dehalogenase OS=Phaeobacter gal...    35   1.9  
tr|A9EIW6|A9EIW6_9RHOB Oxidoreductase, NAD-binding/iron-sulfur c...    35   1.9  
tr|Q28K71|Q28K71_JANSC Reductive dehalogenase OS=Jannaschia sp. ...    34   3.2  
tr|Q1E894|Q1E894_COCIM Putative uncharacterized protein OS=Cocci...    34   3.2  
tr|A4W1E8|A4W1E8_STRS2 1,4-alpha-glucan branching enzyme OS=Stre...    33   9.4  
tr|A4VV43|A4VV43_STRSY 1,4-alpha-glucan branching enzyme OS=Stre...    33   9.4  
tr|Q303S5|Q303S5_STRSU 1,4-alpha-glucan branching enzyme OS=Stre...    33   9.4  
tr|A3T0J7|A3T0J7_9RHOB Oxidoreductase, NAD-binding/iron-sulfur c...    33   9.4  
tr|A3SEM6|A3SEM6_9RHOB Oxidoreductase, NAD-binding/iron-sulfur c...    33   9.4  

>tr|Q160Q3|Q160Q3_ROSDO Oxidoreductase, putative OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=RD1_4098
           PE=4 SV=1
          Length = 1070

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR---------LTLGCK*GLQSLAIWPS 250
           P++ WWWD   + DGG  P+R         + L  K   Q+LA++P+
Sbjct: 655 PVKKWWWDIELDRDGGYHPARAPVNARDLQVDLDLKHADQTLAVYPA 701


>tr|A9H5A8|A9H5A8_9RHOB Oxidoreductase, putative OS=Roseobacter
           litoralis Och 149 GN=RLO149_13350 PE=4 SV=1
          Length = 1051

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR---------LTLGCK*GLQSLAIWPS 250
           P++ WWWD   + DGG  P+R         + L  K   Q+LA++P+
Sbjct: 636 PVKKWWWDIELDQDGGYHPARAPVNARDLQVDLDLKYADQTLAVYPA 682


>tr|A4EPC1|A4EPC1_9RHOB Oxidoreductase, NAD-binding/iron-sulfur
           cluster-binding protein OS=Roseobacter sp. SK209-2-6
           GN=RSK20926_11359 PE=4 SV=1
          Length = 1070

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR---------LTLGCK*GLQSLAIWPS 250
           P++ WWWD   E DGG +P+R           L  K   Q+LA++P+
Sbjct: 655 PVKKWWWDLEMEEDGGYRPTRHPVNARALQKDLDLKFEDQTLAVYPA 701


>tr|A3X3Z8|A3X3Z8_9RHOB Oxidoreductase, NAD-binding/iron-sulfur
           cluster-binding protein OS=Roseobacter sp. MED193
           GN=MED193_16939 PE=4 SV=1
          Length = 1069

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSRL---------TLGCK*GLQSLAIWPS 250
           P + WWWD   E DGG +P+R           L  K   Q+LA++P+
Sbjct: 654 PAKKWWWDLEMEEDGGYRPTRYPVNARALQKDLDLKYEDQTLAVYPA 700


>tr|A4EIS8|A4EIS8_9RHOB Oxidoreductase, NAD-binding/iron-sulfur
           cluster-binding protein OS=Roseobacter sp. CCS2
           GN=RCCS2_14379 PE=4 SV=1
          Length = 1074

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR---------LTLGCK*GLQSLAIWPS 250
           P++ WWWD   E DG  +PSR           L  K   Q+LA++P+
Sbjct: 662 PVKKWWWDLEMEDDGAYRPSRHPVNARSLQTDLDLKYTDQTLAVYPA 708


>tr|Q1GLB9|Q1GLB9_SILST Reductive dehalogenase OS=Silicibacter sp.
           (strain TM1040) GN=TM1040_3578 PE=4 SV=1
          Length = 1070

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR 301
           P + WWWD   E DGG +P+R
Sbjct: 655 PAKKWWWDLELEEDGGYRPTR 675


>tr|B7QYT8|B7QYT8_9RHOB Putative reductive dehalogenase subfamily
           protein OS=Ruegeria sp. R11 GN=RR11_825 PE=4 SV=1
          Length = 1102

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR 301
           P + WWWD   E DGG +P+R
Sbjct: 687 PAKKWWWDLELEDDGGYRPTR 707


>tr|A9FWA7|A9FWA7_9RHOB Reductive dehalogenase OS=Phaeobacter
           gallaeciensis BS107 GN=RGBS107_03023 PE=4 SV=1
          Length = 1052

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR 301
           P + WWWD   E DGG +P+R
Sbjct: 637 PAKKWWWDLELEEDGGYRPTR 657


>tr|A9EIW6|A9EIW6_9RHOB Oxidoreductase, NAD-binding/iron-sulfur
           cluster-binding protein OS=Phaeobacter gallaeciensis
           2.10 GN=RG210_10392 PE=4 SV=1
          Length = 1052

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR 301
           P + WWWD   E DGG +P+R
Sbjct: 637 PAKKWWWDLELEEDGGYRPTR 657


>tr|Q28K71|Q28K71_JANSC Reductive dehalogenase OS=Jannaschia sp.
           (strain CCS1) GN=Jann_3974 PE=4 SV=1
          Length = 1069

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 363 PLRDWWWDATFETDGGMQPSR 301
           P++ WWWD   E DGG +P++
Sbjct: 655 PVKKWWWDLEMEEDGGYRPTQ 675