NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912482
Clone id YMU001_000019_A02
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCAAATCTGGTAGTCAATAGTACCAAGTGTATTCCGCACTATGTGCTTTTTAGTGACTG
AGTCAACTTGATTTTTTGGCCCTGAGATTTATCTGTTCTCTCTATCTAGTTCTGTGTTGG
TATGTTACCTTTCGTTACATTACTGTTTCGGTTGTCCTCACTATATGTGAATTAAAGTAC
CAAATTTGGTACTTTTTGGTACTGTTGAACTTGGGTGCACGTCTGTCCACTATTACAGTA
CCAATTTGGTACTTCTTGAACTTGCTGTTTCGGATGATCCTTATCACTTGTGCAATACAG
TACCAAATTTGGTAGTTTTTGGTTCAGTTTTCTGTTTTAGATATGATGTTTGCACTGCGT
ATTTGTCCCCACTCATTATGTCTGTTGGTGCTATAGTAAGTTGGTGGCTAGACGAGACAC
CGGCAAGCACATTGCTGCAGCCTGATGTGGCTGCTAGACCCGGGCGGATGATTGTGCTTG
ATCTTAATGGCGTGCTAATAACCAGCTACAGCGAAATCCCTGAAGCCCTTCAGTGCCTGG
AAGAGAAGCACATGCCA
■■Homology search results ■■ -
sp_hit_id P24896
Definition sp|P24896|NU5M_CAEEL NADH-ubiquinone oxidoreductase chain 5 OS=Caenorhabditis elegans
Align length 75
Score (bit) 32.3
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912482|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_A02.
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24896|NU5M_CAEEL NADH-ubiquinone oxidoreductase chain 5 OS=C...    32   1.6  
sp|Q96WS6|MEU15_SCHPO Meiotic expression up-regulated protein 15...    25   2.0  
sp|P53950|VAC7_YEAST Vacuolar segregation protein 7 OS=Saccharom...    30   6.1  
sp|Q4LE88|S45A2_PIG Membrane-associated transporter protein OS=S...    30   6.1  
sp|Q6B0Y6|YM052_YEAST Putative uncharacterized protein YMR052C-A...    30   8.0  
sp|Q5QD17|TAAR2_MOUSE Trace amine-associated receptor 2 OS=Mus m...    30   8.0  
sp|P58355|S45A2_MOUSE Membrane-associated transporter protein OS...    30   8.0  
sp|B0JPG4|NU4C1_MICAN NAD(P)H-quinone oxidoreductase chain 4 1 O...    30   8.0  
sp|Q4JAY6|ATGT_SULAC 7-cyano-7-deazaguanine tRNA-ribosyltransfer...    30   8.0  

>sp|P24896|NU5M_CAEEL NADH-ubiquinone oxidoreductase chain 5
           OS=Caenorhabditis elegans GN=nd5 PE=3 SV=2
          Length = 527

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +1

Query: 70  DFLALRFI----CSLYLVLCWYVTFRYITVSVVLTICELKYQIWYFLVLLNLGARLSTIT 237
           DFL+L+F       L+  + + VTF  +  S      EL +  +YF++L+ +G+  S   
Sbjct: 35  DFLSLKFNFYFNSILFSFILFLVTFSVLVFSTYYLNSELNFNYYYFVLLIFVGSMFSL-- 92

Query: 238 VPIWYFLNLLFRMIL 282
                F N +F M+L
Sbjct: 93  ----NFSNSIFTMLL 103


>sp|Q96WS6|MEU15_SCHPO Meiotic expression up-regulated protein 15
           OS=Schizosaccharomyces pombe GN=meu15 PE=2 SV=1
          Length = 150

 Score = 25.4 bits (54), Expect(2) = 2.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  FICSLYLVLCWYVTFRYITVSVVLTICELKYQIWYFLV 201
           ++CS+ L+  W+V    + +   L   E+ Y+ W F++
Sbjct: 40  WLCSIALIQTWWVLLGLLPIFFALEHYEVPYK-WIFII 76



 Score = 25.4 bits (54), Expect(2) = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 FSFLF*I*CLHCVFVPTHYVCWCY 394
           + ++F I  L+     T YVCWCY
Sbjct: 70  YKWIFIIEMLYYELYLTLYVCWCY 93


>sp|P53950|VAC7_YEAST Vacuolar segregation protein 7 OS=Saccharomyces
            cerevisiae GN=VAC7 PE=1 SV=1
          Length = 1165

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 237  CNSGQTCTQVQQYQKVPNLVL*FTYSEDNRNSNVTKGNIPT 115
            C+S   CT ++Q +K+  +    +  E++ N++++ GNI T
Sbjct: 999  CDSNGDCTVMEQERKILQITTNLSLVEESANNDISGGNIET 1039


>sp|Q4LE88|S45A2_PIG Membrane-associated transporter protein OS=Sus
           scrofa GN=SLC45A2 PE=2 SV=2
          Length = 532

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 306 NLVVFGSVFCFRYDVCTAYLSPLIMSVGAIVSW----WLDETPASTLLQPDVAA 455
           ++ +FG  FC  Y V  AY++P+++SVG   S     WL       LLQP V +
Sbjct: 39  SMAMFGREFC--YAVEAAYVTPVLLSVGLPKSLYSVVWLLSPVLGFLLQPVVGS 90


>sp|Q6B0Y6|YM052_YEAST Putative uncharacterized protein YMR052C-A
           OS=Saccharomyces cerevisiae GN=YMR052C-A PE=5 SV=1
          Length = 121

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
 Frame = +1

Query: 103 YLVLCWYVTFRYITVSVVLTICELKYQIWYFLVLL---NLGARLSTITVPIWYFLN---- 261
           YLV+  Y      T+  V TI E +Y  + F+++      G++  ++ + I  ++N    
Sbjct: 10  YLVIILY------TIMPVKTIEEYEYDFFRFILIFFFFQKGSKHLSVVISILKYINAFKG 63

Query: 262 LLFRMILITCAIQYQIW*FLVQFSVLDMMF 351
           LLF + L  C+I  +++ +LV+   +  +F
Sbjct: 64  LLFHVCLHFCSIHRRLFQYLVRVLQVFQLF 93


>sp|Q5QD17|TAAR2_MOUSE Trace amine-associated receptor 2 OS=Mus
           musculus GN=Taar2 PE=2 SV=1
          Length = 339

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
 Frame = +3

Query: 186 LVLFGTVELGCTSVHYYS-----TNLVLLELAVSDD-------PYHLCNTVPNLVVFGSV 329
           + +FG + +   S+ Y+      TNL++L +AV+D        PY +  +V N   FG  
Sbjct: 44  ITIFGNLAM-IISISYFKQLHTPTNLLILSMAVTDFLLGFTIMPYSMVRSVENCWYFGLT 102

Query: 330 FC 335
           FC
Sbjct: 103 FC 104


>sp|P58355|S45A2_MOUSE Membrane-associated transporter protein
           OS=Mus musculus GN=Slc45a2 PE=1 SV=1
          Length = 530

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 306 NLVVFGSVFCFRYDVCTAYLSPLIMSVGAIVSW----WLDETPASTLLQPDVAA 455
           ++ +FG  FC  Y V  AY++P+++SVG   S     WL       LLQP V +
Sbjct: 39  SMAMFGREFC--YAVEAAYVTPVLLSVGLPKSLYSMVWLLSPILGFLLQPVVGS 90


>sp|B0JPG4|NU4C1_MICAN NAD(P)H-quinone oxidoreductase chain 4 1
           OS=Microcystis aeruginosa (strain NIES-843) GN=ndhD1
           PE=3 SV=1
          Length = 527

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +1

Query: 88  FICSLYLVLCWYVTFRYITVSVVLTICELKYQIWYFLVLLNLGARLSTITVPIWYFLNLL 267
           FI +L ++  W VTF              K +++YFL+LL  G +++   V       L+
Sbjct: 97  FITTLAILAAWPVTF--------------KPKLFYFLMLLMYGGQIAVFAVQDLLLFFLV 142

Query: 268 FRMILITCAIQYQIW 312
           + + L+   +   IW
Sbjct: 143 WELELVPVYLILSIW 157


>sp|Q4JAY6|ATGT_SULAC 7-cyano-7-deazaguanine tRNA-ribosyltransferase
           OS=Sulfolobus acidocaldarius GN=tgtA PE=3 SV=1
          Length = 498

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 330 KLNQKLPNLVLYCTSDKDHPKQQVQEVPN 244
           K+ Q+   LVLYC+  KD+P +  +++ N
Sbjct: 388 KIKQRSKALVLYCSDSKDNPLKNTEDMKN 416
tr_hit_id Q68SQ6
Definition tr|Q68SQ6|Q68SQ6_GRAEB NADH dehydrogenase subunit 2 OS=Graptacme eborea
Align length 120
Score (bit) 38.1
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912482|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_A02.
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q68SQ6|Q68SQ6_GRAEB NADH dehydrogenase subunit 2 OS=Graptacme...    38   0.32 
tr|Q859H6|Q859H6_9VIRU Putative uncharacterized protein OS=Vibri...    35   2.7  
tr|Q1LFH6|Q1LFH6_RALME Dimethylmenaquinone methyltransferase OS=...    34   6.1  
tr|Q6TBC8|Q6TBC8_9ROSI PHYC (Fragment) OS=Hymenanthera alpina GN...    34   6.1  
tr|Q04WX3|Q04WX3_LEPBL Sugar phosphatase OS=Leptospira borgpeter...    33   7.9  
tr|Q04NP0|Q04NP0_LEPBJ Sugar phosphatase OS=Leptospira borgpeter...    33   7.9  
tr|Q01E57|Q01E57_OSTTA Putative membrane transporter (ISS) (Frag...    33   7.9  

>tr|Q68SQ6|Q68SQ6_GRAEB NADH dehydrogenase subunit 2 OS=Graptacme
           eborea GN=nad2 PE=4 SV=1
          Length = 331

 Score = 38.1 bits (87), Expect = 0.32
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
 Frame = +1

Query: 25  QVY-SALCAF**LSQLDFLALRFICSLYLVLCWYVTFRYITVSVVLTICELKYQIWY--- 192
           QVY   L A+  +S L ++    + ++Y  +C+++ + +IT+S+ + +    Y   Y   
Sbjct: 174 QVYIRPLLAYSSISHLSWMLAGSLINVYYAICYFIVYLFITLSLFIFLNTFNYYKMYMMN 233

Query: 193 -------FLVLLNLGARLSTITVPIWYFLNLLFRMILITCAIQYQIW*FLVQFSVLDMMF 351
                   L++L+L     T+      FLN +  + L+     Y +   L+ FS+L + F
Sbjct: 234 SMYMKMSILIILSLSGMPPTLG-----FLNKIMVLKLLANTDNYMMIFILIMFSMLSLSF 288


>tr|Q859H6|Q859H6_9VIRU Putative uncharacterized protein OS=Vibrio
           phage f237 PE=4 SV=1
          Length = 497

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 372 LIMSVGAIVSWWLDETPASTLL-QPDVAARPGRMIVLDLNGVLITSYSEIPEA 527
           +I S+G      LDE P  TL  QPDVA    + I L +NG L TSY  + +A
Sbjct: 209 IIQSIG------LDEIPKGTLKKQPDVAKNKRKPIRLTVNGKLYTSYKALADA 255


>tr|Q1LFH6|Q1LFH6_RALME Dimethylmenaquinone methyltransferase
           OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
           DSM 2839) GN=Rmet_4233 PE=4 SV=1
          Length = 232

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +3

Query: 381 SVGAIVSWWLDETPASTLLQPDVAARPGRMIVLDLNGVLITSYSEIPEALQCLEEK 548
           ++G +V+W     PAS      VA  PG +IV D +GV++    E+P  L+  ++K
Sbjct: 148 AIGGLVNW-----PASVA---GVAVNPGDLIVGDADGVVVIPREEVPVILELAQKK 195


>tr|Q6TBC8|Q6TBC8_9ROSI PHYC (Fragment) OS=Hymenanthera alpina
           GN=PHYC PE=4 SV=1
          Length = 391

 Score = 33.9 bits (76), Expect = 6.1
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
 Frame = +3

Query: 228 HYYSTNLVLLELAVSDDPYHLCNTVPNLVVF----GSVFCFRYDVCTAYLSPLIMSVGAI 395
           H + T  VL ++ + D P  +    PN++      G+   +R  VC   ++P    +  I
Sbjct: 227 HIFKTQTVLCDMLLRDAPEAIITHSPNVMDLVKCDGAALYYRKKVCLLGVTPTEAQIRDI 286

Query: 396 VSWWLDETPASTLLQPD---VAARPGRMIVLDL 485
             W L+    ST L  D    A  P   I+ DL
Sbjct: 287 AEWLLEYHSGSTGLSTDSLMEAGYPNASILGDL 319


>tr|Q04WX3|Q04WX3_LEPBL Sugar phosphatase OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain L550)
           GN=LBL_4102 PE=4 SV=1
          Length = 258

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 426 STLLQPDVAARPGRMIVLDLNGVLITSYSEIP---EALQCLEEKHMP 557
           +T+LQ  +   P R ++LDL+GVL T  S +P   EA+  L+E H+P
Sbjct: 4   NTILQKRIQT-PIRGVLLDLDGVLYTGDSVLPGAREAISYLKENHIP 49


>tr|Q04NP0|Q04NP0_LEPBJ Sugar phosphatase OS=Leptospira
           borgpetersenii serovar Hardjo-bovis (strain JB197)
           GN=LBJ_4085 PE=4 SV=1
          Length = 268

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +3

Query: 426 STLLQPDVAARPGRMIVLDLNGVLITSYSEIP---EALQCLEEKHMP 557
           +T+LQ  +   P R ++LDL+GVL T  S +P   EA+  L+E H+P
Sbjct: 4   NTILQKRIQT-PIRGVLLDLDGVLYTGDSVLPGAREAISYLKENHIP 49


>tr|Q01E57|Q01E57_OSTTA Putative membrane transporter (ISS)
           (Fragment) OS=Ostreococcus tauri GN=Ot02g05210 PE=4 SV=1
          Length = 456

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 225 VHYYSTNLVLLELAVSDDPYHLCNTVPNLVVFGSVFCFRYDVCTAYLSPLIMSVGAI 395
           +H Y+T    +E+A +   Y LC  V NLV    +   R+ +    +S L++ +G I
Sbjct: 41  MHAYATGFTAMEVATTFTLYELCGAVTNLV--AGIAGARFGIRQTLVSGLVLQIGGI 95