BP912490
Clone id YMU001_000019_A12
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGATGGGCCTTTGATCATGCATTAGAGGTCGACAGGAATAATGCTGCATCTTATACGCTT
ATGGCCAATATATACTCAGCTGCTCACAAGCAAGGTACTACTTGGAATTTTGTTCAAATG
GTAGGGCAAGGACGGTGCATTGGAAAATCTGAGCATATCAACATTTTAGCTCGTGGGGAT
GCGGAGTACACACAGTGCAAGGATTTATACCTGAATTTAGCCCTCAATAAAGTAGGTTAT
GATTCTTGCAAGCCATTGCCCCTTAAAAATACACTGCAAACAGTGCATAGATGCCAGAAG
TTCTTTGTCTGTCATGGTCACCACACTACGACATCCTCTATTTCAAACCAAGGAAAGTGG
AAATATCTTGACGACCACGTCGGCAGTCATTTGTTGAGCTCTTATAAGTCTTTCGAAGCA
ACTGTTAAAAGGAGAAGCTCCAGAGTGTTAACCAATCAATTGAAGATATTCAACTGGTAA
AAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9CAY1
Definition sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana
Align length 77
Score (bit) 33.5
E-value 0.51
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912490|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_A12.
(478 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi... 33 0.51
sp|P13734|AGAR_ALTAT Beta-agarase OS=Alteromonas atlantica GN=ag... 33 0.67
sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protei... 32 1.1
sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containi... 32 1.5
sp|Q59ZB1|ADA_CANAL Adenosine deaminase OS=Candida albicans GN=A... 32 1.9
sp|Q9ER31|ENTP6_RAT Ectonucleoside triphosphate diphosphohydrola... 30 7.4
sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protei... 29 9.6

>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing
protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52
PE=3 SV=1
Length = 623

Score = 33.5 bits (75), Expect = 0.51
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Frame = +1

Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQGRCIGKS------EH---I 159
AF +E + NN Y LM+NIYS + Q W ++++ + R K EH +
Sbjct: 448 AFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWR-IRVMMRERAFRKKPGYSYVEHKGRV 506

Query: 160 NILARGDAEYTQCKDLY 210
++ GD + Q ++++
Sbjct: 507 HLFLAGDRSHEQTEEVH 523


>sp|P13734|AGAR_ALTAT Beta-agarase OS=Alteromonas atlantica GN=agrA
PE=4 SV=1
Length = 505

Score = 33.1 bits (74), Expect = 0.67
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1

Query: 67 NIYSAAHKQGTTWNFVQMVGQGRCIGKSEHINILARGDAE 186
++Y GT WNF Q + IG ++ NI+ARG A+
Sbjct: 75 DVYFGRDNGGTVWNFNQAIEDPANIGYADPQNIIARGQAQ 114


>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein
At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657

Score = 32.3 bits (72), Expect = 1.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1

Query: 1 RWAFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMV 123
R+A D E++ N +YT+MAN+Y+ A + W +MV
Sbjct: 555 RFACDRLFEMEPENTGNYTIMANLYTQAGR----WEEAEMV 591


>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing
protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22
PE=3 SV=1
Length = 743

Score = 32.0 bits (71), Expect = 1.5
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +1

Query: 1 RWAFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQG 132
+WA + +E+D ++ A YTL+++IY++ K W+ V + +G
Sbjct: 560 KWAAESLIELDPHHPAGYTLLSSIYASKGK----WDSVAQLRRG 599


>sp|Q59ZB1|ADA_CANAL Adenosine deaminase OS=Candida albicans GN=AAH1
PE=3 SV=1
Length = 356

Score = 31.6 bits (70), Expect = 1.9
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +1

Query: 52 YTLMANIYSAAHKQGTTWNFVQMVGQGRCIGKSEHINILARGDAEYTQCKDLYLNLAL-N 228
Y L + ++ AH G + V QG + ++ I+++ +G CKD N
Sbjct: 88 YDLAMDYFTKAHSDGCLHSEVFFDPQGH-VERNIDIDVVVQGFNR--ACKDANTKYGTTN 144

Query: 229 KVGYDSCKPLPLKNTLQTVHRCQKFF---VCHG 318
K+ + LP +N LQT+H K++ + HG
Sbjct: 145 KLIMCLLRHLPAENGLQTIHSASKYYQDGIIHG 177


>sp|Q9ER31|ENTP6_RAT Ectonucleoside triphosphate diphosphohydrolase
6 OS=Rattus norvegicus GN=Entpd6 PE=1 SV=1
Length = 455

Score = 29.6 bits (65), Expect = 7.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -2

Query: 309 DKELLASMHCLQCIFKGQWLARIITYFIEG*IQV*ILALCVLRI 178
DKEL++ CL F+G+W +TY I G V + LC R+
Sbjct: 290 DKELVSP--CLSPRFRGKWEHAEVTYRISGQKAVGLYELCASRV 331


>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein
At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681

Score = 29.3 bits (64), Expect = 9.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1

Query: 1 RWAFDHALEVDRNNAASYTLMANIYSAA 84
+WA + LE+ N Y L+AN+Y+AA
Sbjct: 571 KWAAEKLLEMKPENPGYYVLIANMYAAA 598


tr_hit_id B3U1N4
Definition tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragment) OS=Diplophyllum albicans
Align length 97
Score (bit) 38.1
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912490|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_A12.
(478 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragmen... 38 0.22
tr|Q8YU67|Q8YU67_ANASP All2487 protein OS=Anabaena sp. (strain P... 37 0.64
tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome ... 36 1.1
tr|A5BJ29|A5BJ29_VITVI Putative uncharacterized protein OS=Vitis... 36 1.1
tr|Q3MG41|Q3MG41_ANAVT TPR repeat OS=Anabaena variabilis (strain... 35 1.4
tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen... 35 1.9
tr|Q1WK43|Q1WK43_9REOV NSP1 OS=Italian lapine rotavirus 30/96 GN... 35 2.4
tr|A7QGY9|A7QGY9_VITVI Chromosome chr3 scaffold_95, whole genome... 34 4.1
tr|A9UPZ3|A9UPZ3_MONBE Predicted protein OS=Monosiga brevicollis... 34 4.1
tr|Q9SKW0|Q9SKW0_ARATH F5J5.10 OS=Arabidopsis thaliana PE=4 SV=1 34 4.2
tr|B2IZ56|B2IZ56_NOSP7 TPR repeat-containing protein OS=Nostoc p... 33 5.4
tr|Q15TD0|Q15TD0_PSEA6 Agarase OS=Pseudoalteromonas atlantica (s... 33 7.0
tr|A7P9K4|A7P9K4_VITVI Chromosome chr3 scaffold_8, whole genome ... 33 7.0
tr|A5AX00|A5AX00_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|Q943L3|Q943L3_ORYSJ Pentatricopeptide (PPR) repeat-containing... 33 9.2
tr|Q53P99|Q53P99_ORYSJ Pentatricopeptide, putative, expressed OS... 33 9.2
tr|A2ZDV1|A2ZDV1_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A2WWU1|A2WWU1_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2

>tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragment)
OS=Diplophyllum albicans GN=PPR PE=4 SV=1
Length = 143

Score = 38.1 bits (87), Expect = 0.22
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Frame = +1

Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQG---RCIGK---------S 150
A + L+++ N +Y L+ANIY+AA K W+ + Q RC+ K +
Sbjct: 8 AAEQLLKLEPENVGAYVLLANIYAAAGK----WDSSAAIHQDRLERCVSKQPGRAWIEVN 63

Query: 151 EHINILARGDAEYTQCKDLYLNLA-LNKVGYDS-CKP 255
++ + D E+ Q +++Y L LN++ ++ CKP
Sbjct: 64 NEVHTFTQDDREHPQIREIYGELTRLNRLMIEAGCKP 100


>tr|Q8YU67|Q8YU67_ANASP All2487 protein OS=Anabaena sp. (strain PCC
7120) GN=all2487 PE=4 SV=1
Length = 224

Score = 36.6 bits (83), Expect = 0.64
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1

Query: 4 WAFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQ 117
WAF+ A+++DRNNA +Y MA +Y + N +Q
Sbjct: 162 WAFEQAIKLDRNNAQTYEFMAAMYKQRRQTKQASNLLQ 199


>tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00024861001
PE=4 SV=1
Length = 576

Score = 35.8 bits (81), Expect = 1.1
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Frame = +1

Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQ------------GRCIGKS 150
A H ++V+ +N+ +YTL++NIY+ K WN MV + G CI +
Sbjct: 462 ALQHLIKVEPHNSGNYTLLSNIYATQSK----WNEAGMVRKVMRDTGVKKMPGGSCIEVN 517

Query: 151 EHINILARGDAEYTQCKDLY 210
++ GD + Q + ++
Sbjct: 518 NRVHEFVAGDKLHPQSERIF 537


>tr|A5BJ29|A5BJ29_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041201 PE=4 SV=1
Length = 576

Score = 35.8 bits (81), Expect = 1.1
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Frame = +1

Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQ------------GRCIGKS 150
A H ++V+ +N+ +YTL++NIY+ K WN MV + G CI +
Sbjct: 462 ALQHLIKVEPHNSGNYTLLSNIYATQSK----WNEAGMVRKVMRDTGVKKMPGGSCIEVN 517

Query: 151 EHINILARGDAEYTQCKDLY 210
++ GD + Q + ++
Sbjct: 518 NRVHEFVAGDKLHPQSERIF 537


>tr|Q3MG41|Q3MG41_ANAVT TPR repeat OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=Ava_0419 PE=3 SV=1
Length = 224

Score = 35.4 bits (80), Expect = 1.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1

Query: 4 WAFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQ 117
WAF+ A+++D+NNA +Y MA +Y + N +Q
Sbjct: 162 WAFEQAIKLDKNNAQTYEFMAAMYKQRRQTKQASNLLQ 199


>tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1
Length = 1392

Score = 35.0 bits (79), Expect = 1.9
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +1

Query: 43 AASYTLMANIYSAAHKQGTTWNFVQMVGQGRCIGKSEHINILARGDAEYTQCKDLYLNLA 222
AA+YT A A K+ T + Q++ + K+ I DA+Y + YL+LA
Sbjct: 1265 AATYTPNAESIFAPLKKQTVFIANQVIKMMQAGSKNRSSRICL--DADYNESNTRYLDLA 1322

Query: 223 LNKVGYDSCKPLPLKNT 273
LN++ D+ +P+++T
Sbjct: 1323 LNRLDSDNSTDIPIQST 1339


>tr|Q1WK43|Q1WK43_9REOV NSP1 OS=Italian lapine rotavirus 30/96
GN=NSP1 PE=4 SV=1
Length = 492

Score = 34.7 bits (78), Expect = 2.4
Identities = 27/97 (27%), Positives = 43/97 (44%)
Frame = +1

Query: 187 YTQCKDLYLNLALNKVGYDSCKPLPLKNTLQTVHRCQKFFVCHGHHTTTSSISNQGKWKY 366
+ C DLY L L+++ ++ PLP LQ+++ K+F + S + K Y
Sbjct: 174 FVNCIDLYDKLLLDQINFERMSPLPA--NLQSIY-ANKYF------KLSRLPSMKLKQVY 224

Query: 367 LDDHVGSHLLSSYKSFEATVKRRSSRVLTNQLKIFNW 477
D +L+S YKS SR++ L F W
Sbjct: 225 YSDFSKQNLISKYKS--------KSRIVLRNLTEFTW 253


>tr|A7QGY9|A7QGY9_VITVI Chromosome chr3 scaffold_95, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00038549001
PE=4 SV=1
Length = 900

Score = 33.9 bits (76), Expect = 4.1
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +1

Query: 1 RWAFDHALEVDRNNAASYTLMANIYSAAHK-QGTTWNFVQMVGQGRCIGK---------S 150
++A D EVD N Y L++NIY+ K +G + V+ + + R + K +
Sbjct: 728 KFASDRLFEVDSENVGYYVLLSNIYANVGKWEGV--DKVRSLARERGLKKTPGWSSIEVN 785

Query: 151 EHINILARGDAEYTQCKDLYLNLAL 225
++I G+ + +CK++Y L +
Sbjct: 786 RRVDIFYTGNQSHPKCKEIYAELRI 810


>tr|A9UPZ3|A9UPZ3_MONBE Predicted protein OS=Monosiga brevicollis
GN=30887 PE=4 SV=1
Length = 453

Score = 33.9 bits (76), Expect = 4.1
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = +1

Query: 40 NAASYTLMANIYSAAHKQGTTWNFVQMVGQGRCIGKSEHINILARGDAEYTQCKDLYLNL 219
NAASYTL + + + G+ G H I A DA+ DL
Sbjct: 243 NAASYTLKMQAFPESDQFDLAMRISAEAAGGQLGGDIHHSKIEASADAQ--SIWDLCTLR 300

Query: 220 ALNKVGYDSCKPLPLKNTLQTVHR 291
++GY + +PLPL T HR
Sbjct: 301 LSGRLGYGTAQPLPLAVKQATPHR 324


>tr|Q9SKW0|Q9SKW0_ARATH F5J5.10 OS=Arabidopsis thaliana PE=4 SV=1
Length = 727

Score = 33.9 bits (76), Expect = 4.2
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3

Query: 293 HLCTVCSVFLRGNGLQES*PTLLRAKFRYKSLHCVYSASPRAKMLICSD 147
H C+ SV N +Q P L+ + F +HC YS + R KML SD
Sbjct: 279 HTCSR-SVETTSNSIQRGTPRLIASVFALLGVHCSYSTALRGKMLHVSD 326