BP912490 |
Clone id |
YMU001_000019_A12 |
Library |
YMU01 |
Length |
496 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000019_A12. |
Accession |
BP912490 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGATGGGCCTTTGATCATGCATTAGAGGTCGACAGGAATAATGCTGCATCTTATACGCTT ATGGCCAATATATACTCAGCTGCTCACAAGCAAGGTACTACTTGGAATTTTGTTCAAATG GTAGGGCAAGGACGGTGCATTGGAAAATCTGAGCATATCAACATTTTAGCTCGTGGGGAT GCGGAGTACACACAGTGCAAGGATTTATACCTGAATTTAGCCCTCAATAAAGTAGGTTAT GATTCTTGCAAGCCATTGCCCCTTAAAAATACACTGCAAACAGTGCATAGATGCCAGAAG TTCTTTGTCTGTCATGGTCACCACACTACGACATCCTCTATTTCAAACCAAGGAAAGTGG AAATATCTTGACGACCACGTCGGCAGTCATTTGTTGAGCTCTTATAAGTCTTTCGAAGCA ACTGTTAAAAGGAGAAGCTCCAGAGTGTTAACCAATCAATTGAAGATATTCAACTGGTAA AAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9CAY1 |
Definition |
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana |
Align length |
77 |
Score (bit) |
33.5 |
E-value |
0.51 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3U1N4 |
Definition |
tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragment) OS=Diplophyllum albicans |
Align length |
97 |
Score (bit) |
38.1 |
E-value |
0.22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912490|Adiantum capillus-veneris mRNA, clone: YMU001_000019_A12. (478 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragmen... 38 0.22 tr|Q8YU67|Q8YU67_ANASP All2487 protein OS=Anabaena sp. (strain P... 37 0.64 tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome ... 36 1.1 tr|A5BJ29|A5BJ29_VITVI Putative uncharacterized protein OS=Vitis... 36 1.1 tr|Q3MG41|Q3MG41_ANAVT TPR repeat OS=Anabaena variabilis (strain... 35 1.4 tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen... 35 1.9 tr|Q1WK43|Q1WK43_9REOV NSP1 OS=Italian lapine rotavirus 30/96 GN... 35 2.4 tr|A7QGY9|A7QGY9_VITVI Chromosome chr3 scaffold_95, whole genome... 34 4.1 tr|A9UPZ3|A9UPZ3_MONBE Predicted protein OS=Monosiga brevicollis... 34 4.1 tr|Q9SKW0|Q9SKW0_ARATH F5J5.10 OS=Arabidopsis thaliana PE=4 SV=1 34 4.2 tr|B2IZ56|B2IZ56_NOSP7 TPR repeat-containing protein OS=Nostoc p... 33 5.4 tr|Q15TD0|Q15TD0_PSEA6 Agarase OS=Pseudoalteromonas atlantica (s... 33 7.0 tr|A7P9K4|A7P9K4_VITVI Chromosome chr3 scaffold_8, whole genome ... 33 7.0 tr|A5AX00|A5AX00_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0 tr|Q943L3|Q943L3_ORYSJ Pentatricopeptide (PPR) repeat-containing... 33 9.2 tr|Q53P99|Q53P99_ORYSJ Pentatricopeptide, putative, expressed OS... 33 9.2 tr|A2ZDV1|A2ZDV1_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2 tr|A2WWU1|A2WWU1_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2
>tr|B3U1N4|B3U1N4_9MARC Pentatricopeptide repeat protein (Fragment) OS=Diplophyllum albicans GN=PPR PE=4 SV=1 Length = 143
Score = 38.1 bits (87), Expect = 0.22 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 14/97 (14%) Frame = +1
Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQG---RCIGK---------S 150 A + L+++ N +Y L+ANIY+AA K W+ + Q RC+ K + Sbjct: 8 AAEQLLKLEPENVGAYVLLANIYAAAGK----WDSSAAIHQDRLERCVSKQPGRAWIEVN 63
Query: 151 EHINILARGDAEYTQCKDLYLNLA-LNKVGYDS-CKP 255 ++ + D E+ Q +++Y L LN++ ++ CKP Sbjct: 64 NEVHTFTQDDREHPQIREIYGELTRLNRLMIEAGCKP 100
>tr|Q8YU67|Q8YU67_ANASP All2487 protein OS=Anabaena sp. (strain PCC 7120) GN=all2487 PE=4 SV=1 Length = 224
Score = 36.6 bits (83), Expect = 0.64 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +1
Query: 4 WAFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQ 117 WAF+ A+++DRNNA +Y MA +Y + N +Q Sbjct: 162 WAFEQAIKLDRNNAQTYEFMAAMYKQRRQTKQASNLLQ 199
>tr|A7P0D1|A7P0D1_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024861001 PE=4 SV=1 Length = 576
Score = 35.8 bits (81), Expect = 1.1 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 12/80 (15%) Frame = +1
Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQ------------GRCIGKS 150 A H ++V+ +N+ +YTL++NIY+ K WN MV + G CI + Sbjct: 462 ALQHLIKVEPHNSGNYTLLSNIYATQSK----WNEAGMVRKVMRDTGVKKMPGGSCIEVN 517
Query: 151 EHINILARGDAEYTQCKDLY 210 ++ GD + Q + ++ Sbjct: 518 NRVHEFVAGDKLHPQSERIF 537
>tr|A5BJ29|A5BJ29_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041201 PE=4 SV=1 Length = 576
Score = 35.8 bits (81), Expect = 1.1 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 12/80 (15%) Frame = +1
Query: 7 AFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQMVGQ------------GRCIGKS 150 A H ++V+ +N+ +YTL++NIY+ K WN MV + G CI + Sbjct: 462 ALQHLIKVEPHNSGNYTLLSNIYATQSK----WNEAGMVRKVMRDTGVKKMPGGSCIEVN 517
Query: 151 EHINILARGDAEYTQCKDLY 210 ++ GD + Q + ++ Sbjct: 518 NRVHEFVAGDKLHPQSERIF 537
>tr|Q3MG41|Q3MG41_ANAVT TPR repeat OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_0419 PE=3 SV=1 Length = 224
Score = 35.4 bits (80), Expect = 1.4 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1
Query: 4 WAFDHALEVDRNNAASYTLMANIYSAAHKQGTTWNFVQ 117 WAF+ A+++D+NNA +Y MA +Y + N +Q Sbjct: 162 WAFEQAIKLDKNNAQTYEFMAAMYKQRRQTKQASNLLQ 199
>tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1 Length = 1392
Score = 35.0 bits (79), Expect = 1.9 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = +1
Query: 43 AASYTLMANIYSAAHKQGTTWNFVQMVGQGRCIGKSEHINILARGDAEYTQCKDLYLNLA 222 AA+YT A A K+ T + Q++ + K+ I DA+Y + YL+LA Sbjct: 1265 AATYTPNAESIFAPLKKQTVFIANQVIKMMQAGSKNRSSRICL--DADYNESNTRYLDLA 1322
Query: 223 LNKVGYDSCKPLPLKNT 273 LN++ D+ +P+++T Sbjct: 1323 LNRLDSDNSTDIPIQST 1339
>tr|Q1WK43|Q1WK43_9REOV NSP1 OS=Italian lapine rotavirus 30/96 GN=NSP1 PE=4 SV=1 Length = 492
Score = 34.7 bits (78), Expect = 2.4 Identities = 27/97 (27%), Positives = 43/97 (44%) Frame = +1
Query: 187 YTQCKDLYLNLALNKVGYDSCKPLPLKNTLQTVHRCQKFFVCHGHHTTTSSISNQGKWKY 366 + C DLY L L+++ ++ PLP LQ+++ K+F + S + K Y Sbjct: 174 FVNCIDLYDKLLLDQINFERMSPLPA--NLQSIY-ANKYF------KLSRLPSMKLKQVY 224
Query: 367 LDDHVGSHLLSSYKSFEATVKRRSSRVLTNQLKIFNW 477 D +L+S YKS SR++ L F W Sbjct: 225 YSDFSKQNLISKYKS--------KSRIVLRNLTEFTW 253
>tr|A7QGY9|A7QGY9_VITVI Chromosome chr3 scaffold_95, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038549001 PE=4 SV=1 Length = 900
Score = 33.9 bits (76), Expect = 4.1 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Frame = +1
Query: 1 RWAFDHALEVDRNNAASYTLMANIYSAAHK-QGTTWNFVQMVGQGRCIGK---------S 150 ++A D EVD N Y L++NIY+ K +G + V+ + + R + K + Sbjct: 728 KFASDRLFEVDSENVGYYVLLSNIYANVGKWEGV--DKVRSLARERGLKKTPGWSSIEVN 785
Query: 151 EHINILARGDAEYTQCKDLYLNLAL 225 ++I G+ + +CK++Y L + Sbjct: 786 RRVDIFYTGNQSHPKCKEIYAELRI 810
>tr|A9UPZ3|A9UPZ3_MONBE Predicted protein OS=Monosiga brevicollis GN=30887 PE=4 SV=1 Length = 453
Score = 33.9 bits (76), Expect = 4.1 Identities = 25/84 (29%), Positives = 34/84 (40%) Frame = +1
Query: 40 NAASYTLMANIYSAAHKQGTTWNFVQMVGQGRCIGKSEHINILARGDAEYTQCKDLYLNL 219 NAASYTL + + + G+ G H I A DA+ DL Sbjct: 243 NAASYTLKMQAFPESDQFDLAMRISAEAAGGQLGGDIHHSKIEASADAQ--SIWDLCTLR 300
Query: 220 ALNKVGYDSCKPLPLKNTLQTVHR 291 ++GY + +PLPL T HR Sbjct: 301 LSGRLGYGTAQPLPLAVKQATPHR 324
>tr|Q9SKW0|Q9SKW0_ARATH F5J5.10 OS=Arabidopsis thaliana PE=4 SV=1 Length = 727
Score = 33.9 bits (76), Expect = 4.2 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = -3
Query: 293 HLCTVCSVFLRGNGLQES*PTLLRAKFRYKSLHCVYSASPRAKMLICSD 147 H C+ SV N +Q P L+ + F +HC YS + R KML SD Sbjct: 279 HTCSR-SVETTSNSIQRGTPRLIASVFALLGVHCSYSTALRGKMLHVSD 326
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