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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912491
Clone id YMU001_000019_B01
Library
Length 391
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGGACACTGCTGGTAGGGAAACAAACTCCCATAGTCCAACCTTTTGCAGGAAGGCTCTT
GTAGGCCGTGACCTCTTCAAGTAGTTTTCTGCTTCTTTTGGTATCATCATTGTCTCCACC
AAATTGCCTTTGGCATCCTGATAAGTTCCTTGATATATCTGGAAGGAACTTGCCTGTTGT
ATCTCTGCTATAACCATGTACATGCTGGCTCCAATGTTAAGATTGTGTAAGGATCAGCAT
CATCTATTATAATTTTTGTGCTTTCTTTTTATTCCATGGAACCTGTATCCACAAGCAGTC
ATAAGGGTGAAGTTACAAGTACTCTTGCATCAAATTTGACTAACACTTTAGCATGCATGC
AGATGAGCTGATTAGTCCCTATGAAATCTGT
■■Homology search results ■■ -
sp_hit_id Q9JH67
Definition sp|Q9JH67|NS1A_OASV1 Non-structural polyprotein 1A OS=Ovine astrovirus 1
Align length 38
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912491|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B01.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JH67|NS1A_OASV1 Non-structural polyprotein 1A OS=Ovine astr...    30   3.8  
sp|Q9JH66|NS1AB_OASV1 Non-structural polyprotein 1AB OS=Ovine as...    30   3.8  
sp|Q3SZ27|APOOL_BOVIN Apolipoprotein O-like OS=Bos taurus GN=APO...    30   3.8  
sp|Q6UXV4|APOOL_HUMAN Apolipoprotein O-like OS=Homo sapiens GN=A...    30   4.9  
sp|Q5NVS6|APOOL_PONAB Apolipoprotein O-like OS=Pongo abelii GN=A...    29   8.4  

>sp|Q9JH67|NS1A_OASV1 Non-structural polyprotein 1A OS=Ovine
           astrovirus 1 GN=ORF1 PE=3 SV=1
          Length = 844

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 147 NLSGCQRQFGGDNDDTKRSRKLLEEVTAYKSLPAKGWT 34
           NL G  ++  G N  TKR RK +     YK++  KG+T
Sbjct: 634 NLGGFSQKKKGKNKSTKRKRKAVWTEEEYKAMLEKGFT 671


>sp|Q9JH66|NS1AB_OASV1 Non-structural polyprotein 1AB OS=Ovine
           astrovirus 1 GN=ORF1 PE=3 SV=2
          Length = 1351

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 147 NLSGCQRQFGGDNDDTKRSRKLLEEVTAYKSLPAKGWT 34
           NL G  ++  G N  TKR RK +     YK++  KG+T
Sbjct: 634 NLGGFSQKKKGKNKSTKRKRKAVWTEEEYKAMLEKGFT 671


>sp|Q3SZ27|APOOL_BOVIN Apolipoprotein O-like OS=Bos taurus GN=APOL
           PE=2 SV=1
          Length = 264

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 203 MYMVIAEIQQASSFQI--YQGTYQDAKGNLVETMMIPKEAENYLKRSRPTRAFLQKVGL 33
           + M  A I+  +S  I   +G Y   K  +++T+   K+A  YLK   P R FL K+G+
Sbjct: 61  LQMGFASIRTTTSRYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLK--NPPRDFLPKIGV 117


>sp|Q6UXV4|APOOL_HUMAN Apolipoprotein O-like OS=Homo sapiens
           GN=APOOL PE=1 SV=1
          Length = 268

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 203 MYMVIAEIQQASSFQI--YQGTYQDAKGNLVETMMIPKEAENYLKRSRPTRAFLQKVGL 33
           + M  A I+ A+   I   +G Y   K  +++T+   K+A  YLK   P R FL K+G+
Sbjct: 61  LQMGFASIRTATGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYLK--NPPRDFLPKMGV 117


>sp|Q5NVS6|APOOL_PONAB Apolipoprotein O-like OS=Pongo abelii
           GN=APOOL PE=2 SV=1
          Length = 266

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 203 MYMVIAEIQQASSFQI--YQGTYQDAKGNLVETMMIPKEAENYLKRSRPTRAFLQKVGL 33
           + M  A I+ A+   I   +G Y   K  +++T+   K+A  Y+K   P R FL K+G+
Sbjct: 61  LQMGFASIRTATGCYIGWCKGVYVFVKNGIMDTVQFGKDAYVYMK--NPPRDFLPKMGV 117
tr_hit_id B1VKY1
Definition tr|B1VKY1|B1VKY1_STRGG Putative FecCD-family membrane transport protein OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
Align length 51
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912491|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B01.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1VKY1|B1VKY1_STRGG Putative FecCD-family membrane transport ...    33   9.3  

>tr|B1VKY1|B1VKY1_STRGG Putative FecCD-family membrane transport
           protein OS=Streptomyces griseus subsp. griseus (strain
           JCM 4626 / NBRC 13350) GN=SGR_3180 PE=4 SV=1
          Length = 365

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 114 LHQIAFGILISSLIYLEGTCLLYLCYNH--VHAGSNVKIV*GSASSIIIFV 260
           LH+ A G+  S ++ L   C++YLC     V  G  VK++ G  SS  + V
Sbjct: 35  LHRRATGVAASLVVLLAAVCVVYLCVGETFVAPGEVVKVILGQPSSAELVV 85