BP912492 |
Clone id |
YMU001_000019_B02 |
Library |
YMU01 |
Length |
507 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000019_B02. |
Accession |
BP912492 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1417Contig1 |
Sequence |
AGCGCTCACCACGTTCATTTTTACTTGTAGGAATCGGGTCTAAAATCAAGCTCACCTCCG AAAAGGCCCTCATACTCGAATTGCCTCAATAATCTTGCACGGGGGGAGTCAGGCTCCCCA TCAGAATCGAGCCCAAAATCCAACATATTGAGGAACTCACCAGCCACTAGGTCTACCTCC TCGTCTAGATCTGGGCTCATGTCCCTTGCAAAACCAGACAACTCCTCCTTCGGCTGGCTG TCCCATGCCTCTTTCGAATCACTCCAATCCTCCACCTTATTCTTCACATTATCCATAACC ACATCGGACTTTTCATCTTTCTGAAAAGCATTTTCCATAAACCCTTTGCCTCTACCATCC TTGCTCCCCGATGATAAGAGACTCCCTGCCAGACCGTTGCTGAGATCCATGCGAGAAGGC TTATTCTGTATGCTTCCACCAATTACCTCCTCTTTGCTATCCTTCTCCTCTGACGTTTCC TGATGAAGAAGATCATAGCTAAATGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6PDG5 |
Definition |
sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus |
Align length |
56 |
Score (bit) |
32.3 |
E-value |
1.3 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912492|Adiantum capillus-veneris mRNA, clone: YMU001_000019_B02. (507 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus mus... 32 1.3 sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergil... 32 1.3 sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats pr... 32 2.2 sp|A6QNZ4|PRR9_BOVIN Proline-rich protein 9 OS=Bos taurus GN=PRR... 31 2.9 sp|O74853|FAP1H_SCHPO FKBP12-associated protein 1 homolog OS=Sch... 31 2.9 sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae GN... 31 3.8 sp|A6QNW6|S26A8_BOVIN Testis anion transporter 1 OS=Bos taurus G... 30 8.4 sp|Q9BT43|RPC7L_HUMAN DNA-directed RNA polymerase III subunit RP... 30 8.4 sp|Q1RMR0|RPC7L_BOVIN DNA-directed RNA polymerase III subunit RP... 30 8.4 sp|Q9DAI6|F135B_MOUSE Protein FAM135B OS=Mus musculus GN=FAM135B... 30 8.4
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 Length = 1213
Score = 32.3 bits (72), Expect = 1.3 Identities = 21/56 (37%), Positives = 23/56 (41%) Frame = +2
Query: 65 GPHTRIASIILHGGSQAPHQNRAQNPTY*GTHQPLGLPPRLDLGSCPLQNQTTPPS 232 GP +I G Q P Q A P P G+PP G P NQ TPPS Sbjct: 1008 GPSEQIGQAGTTAGPQQPQQAGAPQPGA----VPPGVPPPGPHGPSPFPNQPTPPS 1059
>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624) GN=drs1 PE=3 SV=1 Length = 821
Score = 32.3 bits (72), Expect = 1.3 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Frame = -2
Query: 335 ENAFQKDEKSDVVMDNV------KNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDE-- 180 E A +K +K V +D++ K + + K+ ++Q E G A D + D Sbjct: 133 EGAAKKGDKKAVDIDDIISRRQAKKEAAEAKKKKKQSEAQDNESWDGVAEDEDAESDGGM 192
Query: 179 EVDLVAGEFLNMLDFGLDSDGEPDS 105 VD E L FG+ +DGE +S Sbjct: 193 SVDFQDDELLAADGFGMGADGEDES 217
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens GN=RERE PE=1 SV=2 Length = 1566
Score = 31.6 bits (70), Expect = 2.2 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2
Query: 95 LHG-GSQAPHQNRA----QNPTY*GTHQPLGLPPRLDLGSCPLQNQTTPPSAGCP 244 LHG G PH +A Q+P G QP GLPP+ G PL T P+A P Sbjct: 846 LHGQGPPGPHSLQAGPLLQHP---GPPQPFGLPPQASQGQAPL---GTSPAAAYP 894
>sp|A6QNZ4|PRR9_BOVIN Proline-rich protein 9 OS=Bos taurus GN=PRR9 PE=4 SV=2 Length = 116
Score = 31.2 bits (69), Expect = 2.9 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%) Frame = +2
Query: 359 PCSPMIRDSLPDRC*DPCE-----KAYSVCFHQLPPLCYP 463 PC P+ D P +C +PC+ K VC ++ C P Sbjct: 72 PCLPLCPDQCPSQCTEPCQELSQTKCVEVCPQKIQEKCLP 111
>sp|O74853|FAP1H_SCHPO FKBP12-associated protein 1 homolog OS=Schizosaccharomyces pombe GN=fap1 PE=1 SV=1 Length = 1077
Score = 31.2 bits (69), Expect = 2.9 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +2
Query: 374 IRDSLPDRC*DPCEKAYSV-CFHQLPPLCYPSP 469 +++ +P C DPC K C H P LC+P P Sbjct: 270 VKNLVPHSCGDPCGKTRGQDCEHPCPLLCHPGP 302
>sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae GN=TTP1 PE=1 SV=1 Length = 597
Score = 30.8 bits (68), Expect = 3.8 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 2/106 (1%) Frame = -2
Query: 335 ENAFQKDEKS--DVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVA 162 EN K+ K D + + NK SD+ A DS P RD +E++ Sbjct: 33 ENTSVKEYKEYLDRYVQSYSNKYSSSSDAASADDSTP-------LRDNDEAGNEKLKSFY 85
Query: 161 GEFLNMLDFGLDSDGEPDSPRARLLRQFEYEGLFGGELDFRPDSYK 24 N L DSP+ +Q+ L G++ RPD YK Sbjct: 86 NNVFNFLMV--------DSPKGSTAKQYNEACLLKGDIGDRPDHYK 123
>sp|A6QNW6|S26A8_BOVIN Testis anion transporter 1 OS=Bos taurus GN=SLC26A8 PE=2 SV=1 Length = 960
Score = 29.6 bits (65), Expect = 8.4 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 13/96 (13%) Frame = -2
Query: 317 DEKSDVVMDNVKN---KVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGEFLN 147 DE V+ + K E + + P+ + GF+ P+++EE DL + Sbjct: 806 DESETVIQETFSETDKKEESRHKTNRSLIEAPRSKSPGFSLLPDPEMEEESDLDLYSTIQ 865
Query: 146 M-------LDFGLDSDGEPDS---PRARLLRQFEYE 69 M LD LD + EP+S P + L ++ E E Sbjct: 866 MSKDHGLDLDLDLDREVEPESELEPESELDQETELE 901
>sp|Q9BT43|RPC7L_HUMAN DNA-directed RNA polymerase III subunit RPC7-like OS=Homo sapiens GN=POLR3GL PE=2 SV=1 Length = 218
Score = 29.6 bits (65), Expect = 8.4 Identities = 20/76 (26%), Positives = 34/76 (44%) Frame = -2
Query: 335 ENAFQKDEKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGE 156 E QK E + + V ++ ++ + +E + + +EE + +EE D + Sbjct: 145 EETIQKLETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYD------EEEHEEETDYIMSY 198
Query: 155 FLNMLDFGLDSDGEPD 108 F N DFG DSD D Sbjct: 199 FDNGEDFGGDSDDNMD 214
>sp|Q1RMR0|RPC7L_BOVIN DNA-directed RNA polymerase III subunit RPC7-like OS=Bos taurus GN=POLR3GL PE=2 SV=1 Length = 218
Score = 29.6 bits (65), Expect = 8.4 Identities = 20/76 (26%), Positives = 34/76 (44%) Frame = -2
Query: 335 ENAFQKDEKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGE 156 E QK E + + V ++ ++ + +E + + +EE + +EE D + Sbjct: 145 EETIQKLETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYD------EEEHEEETDYIMSY 198
Query: 155 FLNMLDFGLDSDGEPD 108 F N DFG DSD D Sbjct: 199 FDNGEDFGGDSDDNMD 214
>sp|Q9DAI6|F135B_MOUSE Protein FAM135B OS=Mus musculus GN=FAM135B PE=2 SV=3 Length = 1403
Score = 29.6 bits (65), Expect = 8.4 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%) Frame = -2
Query: 308 SDVVMDNVKNKVEDWSDSKEAWDSQPKEE------LSGFARDMS--PDLDEEVDLVAGEF 153 S + + V ++ + +KE + + K E LS A D+ P +EE +L G Sbjct: 1078 SSKLEEEVSERMFSFYQAKEKFKKELKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIH 1137
Query: 152 LNMLDFGLDSDGEPDSPRARLLRQFEYEGLFGGELDF 42 L + GLD + S RL++ F GL GG+LDF Sbjct: 1138 LVVCVHGLDGN----SADLRLVKTFIELGLPGGKLDF 1170
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RK24 |
Definition |
tr|A9RK24|A9RK24_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
124 |
Score (bit) |
50.1 |
E-value |
6.0e-05 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912492|Adiantum capillus-veneris mRNA, clone: YMU001_000019_B02. (507 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RK24|A9RK24_PHYPA Predicted protein OS=Physcomitrella paten... 50 6e-05 tr|Q0WLI8|Q0WLI8_ARATH Putative uncharacterized protein At5g2061... 50 8e-05 tr|A7PE22|A7PE22_VITVI Chromosome chr11 scaffold_13, whole genom... 50 8e-05 tr|A5B9N2|A5B9N2_VITVI Putative uncharacterized protein OS=Vitis... 50 8e-05 tr|A7P4P3|A7P4P3_VITVI Chromosome chr4 scaffold_6, whole genome ... 45 0.003 tr|A5AQ49|A5AQ49_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003 tr|Q7Y219|Q7Y219_ARATH Putative uncharacterized protein At5g2616... 44 0.003 tr|A2ZX67|A2ZX67_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.013 tr|Q9RYW7|Q9RYW7_DEIRA Putative uncharacterized protein OS=Deino... 35 2.1 tr|O62129|O62129_CAEEL Protein F02H6.2, partially confirmed by t... 35 2.1 tr|A6BIV0|A6BIV0_9FIRM Putative uncharacterized protein OS=Dorea... 35 2.7 tr|Q4Y6N1|Q4Y6N1_PLACH Putative uncharacterized protein OS=Plasm... 35 2.7 tr|A4BHD1|A4BHD1_9GAMM Protein containing tetratricopeptide repe... 34 3.5 tr|Q4R3H3|Q4R3H3_MACFA Testis cDNA clone: QtsA-16921, similar to... 34 3.5 tr|A8E5V4|A8E5V4_XENTR LOC100127616 protein OS=Xenopus tropicali... 34 4.6 tr|A3LQG4|A3LQG4_PICST Putative uncharacterized protein (Fragmen... 34 4.6 tr|B2UBA8|B2UBA8_RALPJ Putative uncharacterized protein OS=Ralst... 33 6.0 tr|B5SH80|B5SH80_RALSO The tetratrico peptide repeat containing ... 33 6.0 tr|B5RW71|B5RW71_RALSO The tetratrico peptide repeat containing ... 33 6.0 tr|A7CDI3|A7CDI3_BURPI Putative uncharacterized protein OS=Ralst... 33 6.0 tr|A3RY55|A3RY55_RALSO Transcriptional regulator OS=Ralstonia so... 33 6.0 tr|Q2H5N4|Q2H5N4_CHAGB Predicted protein OS=Chaetomium globosum ... 33 6.0 tr|B6K130|B6K130_SCHJP Shuttle craft like transcriptional regula... 33 6.0 tr|A8AW16|A8AW16_STRGC Cell division protein DivIB OS=Streptococ... 33 7.8
>tr|A9RK24|A9RK24_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_159559 PE=4 SV=1 Length = 1743
Score = 50.1 bits (118), Expect = 6e-05 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 28/124 (22%) Frame = -2
Query: 329 AFQKDEKSDVVMDNVKNKVE-----------DWSDSKEAWDSQPKEELSGFARDMSP--- 192 A KDE++ VVMD V+ VE + + + + ++ ++ P Sbjct: 1238 ADNKDEENTVVMDFVERNVEVEEMTMKMAVAESHEVDKEMTPNVVDYMNSSVKETKPLTA 1297
Query: 191 ---------DLDEEVDLVAGEFLNML-----DFGLDSDGEPDSPRARLLRQFEYEGLFGG 54 + D++ DLVAGEFL++L S DSPRA LL+QFE E L G Sbjct: 1298 TWLQVKTKQEFDDDYDLVAGEFLSLLRDDVSSVAATSQSGEDSPRALLLQQFEQEALIEG 1357
Query: 53 ELDF 42 LDF Sbjct: 1358 GLDF 1361
>tr|Q0WLI8|Q0WLI8_ARATH Putative uncharacterized protein At5g20610 (Fragment) OS=Arabidopsis thaliana GN=At5g20610 PE=2 SV=1 Length = 794
Score = 49.7 bits (117), Expect = 8e-05 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Frame = -2
Query: 338 MENAFQKDEKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAG 159 +E+A + E + + + D + + + KE + +RD++ + VA Sbjct: 134 LESALKSVEMLEATASEDEEDRKKHGDKDKYFITPMKETVPSCSRDVA-------ESVAC 186
Query: 158 EFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGGEL 48 EFL+ML FGL S+ EP+SPR RLLR+FE E L G L Sbjct: 187 EFLDMLGIEHSPFGLSSESEPESPRERLLREFEMETLAAGSL 228
>tr|A7PE22|A7PE22_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016501001 PE=4 SV=1 Length = 839
Score = 49.7 bits (117), Expect = 8e-05 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Frame = -2
Query: 188 LDEEVDLVAGEFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGG 54 LD+ + VA EFL+ML FGL S+ EP+SPR RLLRQFE + L G Sbjct: 222 LDDVTESVASEFLDMLGIEHSPFGLSSESEPESPRERLLRQFEKDTLASG 271
>tr|A5B9N2|A5B9N2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009913 PE=4 SV=1 Length = 1134
Score = 49.7 bits (117), Expect = 8e-05 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 5/50 (10%) Frame = -2
Query: 188 LDEEVDLVAGEFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGG 54 LD+ + VA EFL+ML FGL S+ EP+SPR RLLRQFE + L G Sbjct: 490 LDDVTESVASEFLDMLGIEHSPFGLSSESEPESPRERLLRQFEKDTLASG 539
>tr|A7P4P3|A7P4P3_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032229001 PE=4 SV=1 Length = 998
Score = 44.7 bits (104), Expect = 0.003 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Frame = -2
Query: 197 SPDLDEEVDLVAGEFLNML-----DFGLDSDGEPDSPRARLLRQFEYEGLFGGELDF 42 S LD+ + VA EFL ML FGL +D + +SPR LLRQFE + L G F Sbjct: 447 SLSLDDATESVASEFLKMLGIEDSSFGLSADSDLESPRECLLRQFEKDNLASGNFIF 503
>tr|A5AQ49|A5AQ49_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012140 PE=4 SV=1 Length = 1141
Score = 44.7 bits (104), Expect = 0.003 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 5/57 (8%) Frame = -2
Query: 197 SPDLDEEVDLVAGEFLNML-----DFGLDSDGEPDSPRARLLRQFEYEGLFGGELDF 42 S LD+ + VA EFL ML FGL +D + +SPR LLRQFE + L G F Sbjct: 485 SLSLDDATESVASEFLKMLGIEDSSFGLSADSDLESPRECLLRQFEKDNLASGNFIF 541
>tr|Q7Y219|Q7Y219_ARATH Putative uncharacterized protein At5g26160 OS=Arabidopsis thaliana GN=At5g26160 PE=2 SV=1 Length = 976
Score = 44.3 bits (103), Expect = 0.003 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = -2
Query: 197 SPDLDEEVDLVAGEFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGG 54 S LD+ + VA +FLNML+ + SDGEP SPR LLR+FE E G Sbjct: 438 SLSLDDITESVANDFLNMLELEECSYVYTSDGEPTSPRESLLREFEKEAFASG 490
>tr|A2ZX67|A2ZX67_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_003139 PE=4 SV=1 Length = 1153
Score = 42.4 bits (98), Expect = 0.013 Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 9/65 (13%) Frame = -2
Query: 197 SPDLDEEVDLVAGEFLNMLDF-----GLDSDGEPDSPRARLLRQFEYEGLFGGE----LD 45 S +D D VA EFLNML G S + +SPR RL +QFE E L G LD Sbjct: 515 SRSMDASSDFVASEFLNMLGIEHSPLGATSGSDSESPRERLWKQFEKEALASGNGILGLD 574
Query: 44 FRPDS 30 F ++ Sbjct: 575 FEDEA 579
>tr|Q9RYW7|Q9RYW7_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_A0189 PE=4 SV=1 Length = 504
Score = 35.0 bits (79), Expect = 2.1 Identities = 28/86 (32%), Positives = 44/86 (51%) Frame = -2
Query: 314 EKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGEFLNMLDF 135 EK VMD + +++++D + D QP L G + +P +D +V L AG+F ++ Sbjct: 412 EKVGRVMDVI---IDEFNDDE---DDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGLVKI 465
Query: 134 GLDSDGEPDSPRARLLRQFEYEGLFG 57 G D RAR+ EY+ LFG Sbjct: 466 G-------DIVRARIEDSDEYD-LFG 483
>tr|O62129|O62129_CAEEL Protein F02H6.2, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=F02H6.2 PE=2 SV=2 Length = 478
Score = 35.0 bits (79), Expect = 2.1 Identities = 20/90 (22%), Positives = 44/90 (48%) Frame = -2
Query: 293 DNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGEFLNMLDFGLDSDGE 114 + V +V++ D E + +E+ GF +++ D+D+E + +DFG D +G+ Sbjct: 47 EEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEE-------VPQIDFGYDKNGD 99
Query: 113 PDSPRARLLRQFEYEGLFGGELDFRPDSYK 24 P + L++ + + L+ +S+K Sbjct: 100 PQQLESPALQRIDVGIVLDELLETIEESHK 129
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