BP912492
Clone id YMU001_000019_B02
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AGCGCTCACCACGTTCATTTTTACTTGTAGGAATCGGGTCTAAAATCAAGCTCACCTCCG
AAAAGGCCCTCATACTCGAATTGCCTCAATAATCTTGCACGGGGGGAGTCAGGCTCCCCA
TCAGAATCGAGCCCAAAATCCAACATATTGAGGAACTCACCAGCCACTAGGTCTACCTCC
TCGTCTAGATCTGGGCTCATGTCCCTTGCAAAACCAGACAACTCCTCCTTCGGCTGGCTG
TCCCATGCCTCTTTCGAATCACTCCAATCCTCCACCTTATTCTTCACATTATCCATAACC
ACATCGGACTTTTCATCTTTCTGAAAAGCATTTTCCATAAACCCTTTGCCTCTACCATCC
TTGCTCCCCGATGATAAGAGACTCCCTGCCAGACCGTTGCTGAGATCCATGCGAGAAGGC
TTATTCTGTATGCTTCCACCAATTACCTCCTCTTTGCTATCCTTCTCCTCTGACGTTTCC
TGATGAAGAAGATCATAGCTAAATGTA
■■Homology search results ■■ -
sp_hit_id Q6PDG5
Definition sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus
Align length 56
Score (bit) 32.3
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912492|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B02.
(507 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus mus... 32 1.3
sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergil... 32 1.3
sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats pr... 32 2.2
sp|A6QNZ4|PRR9_BOVIN Proline-rich protein 9 OS=Bos taurus GN=PRR... 31 2.9
sp|O74853|FAP1H_SCHPO FKBP12-associated protein 1 homolog OS=Sch... 31 2.9
sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae GN... 31 3.8
sp|A6QNW6|S26A8_BOVIN Testis anion transporter 1 OS=Bos taurus G... 30 8.4
sp|Q9BT43|RPC7L_HUMAN DNA-directed RNA polymerase III subunit RP... 30 8.4
sp|Q1RMR0|RPC7L_BOVIN DNA-directed RNA polymerase III subunit RP... 30 8.4
sp|Q9DAI6|F135B_MOUSE Protein FAM135B OS=Mus musculus GN=FAM135B... 30 8.4

>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus
GN=Smarcc2 PE=1 SV=2
Length = 1213

Score = 32.3 bits (72), Expect = 1.3
Identities = 21/56 (37%), Positives = 23/56 (41%)
Frame = +2

Query: 65 GPHTRIASIILHGGSQAPHQNRAQNPTY*GTHQPLGLPPRLDLGSCPLQNQTTPPS 232
GP +I G Q P Q A P P G+PP G P NQ TPPS
Sbjct: 1008 GPSEQIGQAGTTAGPQQPQQAGAPQPGA----VPPGVPPPGPHGPSPFPNQPTPPS 1059


>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus
terreus (strain NIH 2624) GN=drs1 PE=3 SV=1
Length = 821

Score = 32.3 bits (72), Expect = 1.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Frame = -2

Query: 335 ENAFQKDEKSDVVMDNV------KNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDE-- 180
E A +K +K V +D++ K + + K+ ++Q E G A D + D
Sbjct: 133 EGAAKKGDKKAVDIDDIISRRQAKKEAAEAKKKKKQSEAQDNESWDGVAEDEDAESDGGM 192

Query: 179 EVDLVAGEFLNMLDFGLDSDGEPDS 105
VD E L FG+ +DGE +S
Sbjct: 193 SVDFQDDELLAADGFGMGADGEDES 217


>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats
protein OS=Homo sapiens GN=RERE PE=1 SV=2
Length = 1566

Score = 31.6 bits (70), Expect = 2.2
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +2

Query: 95 LHG-GSQAPHQNRA----QNPTY*GTHQPLGLPPRLDLGSCPLQNQTTPPSAGCP 244
LHG G PH +A Q+P G QP GLPP+ G PL T P+A P
Sbjct: 846 LHGQGPPGPHSLQAGPLLQHP---GPPQPFGLPPQASQGQAPL---GTSPAAAYP 894


>sp|A6QNZ4|PRR9_BOVIN Proline-rich protein 9 OS=Bos taurus GN=PRR9
PE=4 SV=2
Length = 116

Score = 31.2 bits (69), Expect = 2.9
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = +2

Query: 359 PCSPMIRDSLPDRC*DPCE-----KAYSVCFHQLPPLCYP 463
PC P+ D P +C +PC+ K VC ++ C P
Sbjct: 72 PCLPLCPDQCPSQCTEPCQELSQTKCVEVCPQKIQEKCLP 111


>sp|O74853|FAP1H_SCHPO FKBP12-associated protein 1 homolog
OS=Schizosaccharomyces pombe GN=fap1 PE=1 SV=1
Length = 1077

Score = 31.2 bits (69), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2

Query: 374 IRDSLPDRC*DPCEKAYSV-CFHQLPPLCYPSP 469
+++ +P C DPC K C H P LC+P P
Sbjct: 270 VKNLVPHSCGDPCGKTRGQDCEHPCPLLCHPGP 302


>sp|P38069|TTP1_YEAST Protein TTP1 OS=Saccharomyces cerevisiae
GN=TTP1 PE=1 SV=1
Length = 597

Score = 30.8 bits (68), Expect = 3.8
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Frame = -2

Query: 335 ENAFQKDEKS--DVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVA 162
EN K+ K D + + NK SD+ A DS P RD +E++
Sbjct: 33 ENTSVKEYKEYLDRYVQSYSNKYSSSSDAASADDSTP-------LRDNDEAGNEKLKSFY 85

Query: 161 GEFLNMLDFGLDSDGEPDSPRARLLRQFEYEGLFGGELDFRPDSYK 24
N L DSP+ +Q+ L G++ RPD YK
Sbjct: 86 NNVFNFLMV--------DSPKGSTAKQYNEACLLKGDIGDRPDHYK 123


>sp|A6QNW6|S26A8_BOVIN Testis anion transporter 1 OS=Bos taurus
GN=SLC26A8 PE=2 SV=1
Length = 960

Score = 29.6 bits (65), Expect = 8.4
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Frame = -2

Query: 317 DEKSDVVMDNVKN---KVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGEFLN 147
DE V+ + K E + + P+ + GF+ P+++EE DL +
Sbjct: 806 DESETVIQETFSETDKKEESRHKTNRSLIEAPRSKSPGFSLLPDPEMEEESDLDLYSTIQ 865

Query: 146 M-------LDFGLDSDGEPDS---PRARLLRQFEYE 69
M LD LD + EP+S P + L ++ E E
Sbjct: 866 MSKDHGLDLDLDLDREVEPESELEPESELDQETELE 901


>sp|Q9BT43|RPC7L_HUMAN DNA-directed RNA polymerase III subunit
RPC7-like OS=Homo sapiens GN=POLR3GL PE=2 SV=1
Length = 218

Score = 29.6 bits (65), Expect = 8.4
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = -2

Query: 335 ENAFQKDEKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGE 156
E QK E + + V ++ ++ + +E + + +EE + +EE D +
Sbjct: 145 EETIQKLETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYD------EEEHEEETDYIMSY 198

Query: 155 FLNMLDFGLDSDGEPD 108
F N DFG DSD D
Sbjct: 199 FDNGEDFGGDSDDNMD 214


>sp|Q1RMR0|RPC7L_BOVIN DNA-directed RNA polymerase III subunit
RPC7-like OS=Bos taurus GN=POLR3GL PE=2 SV=1
Length = 218

Score = 29.6 bits (65), Expect = 8.4
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = -2

Query: 335 ENAFQKDEKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGE 156
E QK E + + V ++ ++ + +E + + +EE + +EE D +
Sbjct: 145 EETIQKLETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYD------EEEHEEETDYIMSY 198

Query: 155 FLNMLDFGLDSDGEPD 108
F N DFG DSD D
Sbjct: 199 FDNGEDFGGDSDDNMD 214


>sp|Q9DAI6|F135B_MOUSE Protein FAM135B OS=Mus musculus GN=FAM135B PE=2
SV=3
Length = 1403

Score = 29.6 bits (65), Expect = 8.4
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = -2

Query: 308 SDVVMDNVKNKVEDWSDSKEAWDSQPKEE------LSGFARDMS--PDLDEEVDLVAGEF 153
S + + V ++ + +KE + + K E LS A D+ P +EE +L G
Sbjct: 1078 SSKLEEEVSERMFSFYQAKEKFKKELKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIH 1137

Query: 152 LNMLDFGLDSDGEPDSPRARLLRQFEYEGLFGGELDF 42
L + GLD + S RL++ F GL GG+LDF
Sbjct: 1138 LVVCVHGLDGN----SADLRLVKTFIELGLPGGKLDF 1170


tr_hit_id A9RK24
Definition tr|A9RK24|A9RK24_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 124
Score (bit) 50.1
E-value 6.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912492|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B02.
(507 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RK24|A9RK24_PHYPA Predicted protein OS=Physcomitrella paten... 50 6e-05
tr|Q0WLI8|Q0WLI8_ARATH Putative uncharacterized protein At5g2061... 50 8e-05
tr|A7PE22|A7PE22_VITVI Chromosome chr11 scaffold_13, whole genom... 50 8e-05
tr|A5B9N2|A5B9N2_VITVI Putative uncharacterized protein OS=Vitis... 50 8e-05
tr|A7P4P3|A7P4P3_VITVI Chromosome chr4 scaffold_6, whole genome ... 45 0.003
tr|A5AQ49|A5AQ49_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|Q7Y219|Q7Y219_ARATH Putative uncharacterized protein At5g2616... 44 0.003
tr|A2ZX67|A2ZX67_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.013
tr|Q9RYW7|Q9RYW7_DEIRA Putative uncharacterized protein OS=Deino... 35 2.1
tr|O62129|O62129_CAEEL Protein F02H6.2, partially confirmed by t... 35 2.1
tr|A6BIV0|A6BIV0_9FIRM Putative uncharacterized protein OS=Dorea... 35 2.7
tr|Q4Y6N1|Q4Y6N1_PLACH Putative uncharacterized protein OS=Plasm... 35 2.7
tr|A4BHD1|A4BHD1_9GAMM Protein containing tetratricopeptide repe... 34 3.5
tr|Q4R3H3|Q4R3H3_MACFA Testis cDNA clone: QtsA-16921, similar to... 34 3.5
tr|A8E5V4|A8E5V4_XENTR LOC100127616 protein OS=Xenopus tropicali... 34 4.6
tr|A3LQG4|A3LQG4_PICST Putative uncharacterized protein (Fragmen... 34 4.6
tr|B2UBA8|B2UBA8_RALPJ Putative uncharacterized protein OS=Ralst... 33 6.0
tr|B5SH80|B5SH80_RALSO The tetratrico peptide repeat containing ... 33 6.0
tr|B5RW71|B5RW71_RALSO The tetratrico peptide repeat containing ... 33 6.0
tr|A7CDI3|A7CDI3_BURPI Putative uncharacterized protein OS=Ralst... 33 6.0
tr|A3RY55|A3RY55_RALSO Transcriptional regulator OS=Ralstonia so... 33 6.0
tr|Q2H5N4|Q2H5N4_CHAGB Predicted protein OS=Chaetomium globosum ... 33 6.0
tr|B6K130|B6K130_SCHJP Shuttle craft like transcriptional regula... 33 6.0
tr|A8AW16|A8AW16_STRGC Cell division protein DivIB OS=Streptococ... 33 7.8

>tr|A9RK24|A9RK24_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_159559 PE=4 SV=1
Length = 1743

Score = 50.1 bits (118), Expect = 6e-05
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 28/124 (22%)
Frame = -2

Query: 329 AFQKDEKSDVVMDNVKNKVE-----------DWSDSKEAWDSQPKEELSGFARDMSP--- 192
A KDE++ VVMD V+ VE + + + + ++ ++ P
Sbjct: 1238 ADNKDEENTVVMDFVERNVEVEEMTMKMAVAESHEVDKEMTPNVVDYMNSSVKETKPLTA 1297

Query: 191 ---------DLDEEVDLVAGEFLNML-----DFGLDSDGEPDSPRARLLRQFEYEGLFGG 54
+ D++ DLVAGEFL++L S DSPRA LL+QFE E L G
Sbjct: 1298 TWLQVKTKQEFDDDYDLVAGEFLSLLRDDVSSVAATSQSGEDSPRALLLQQFEQEALIEG 1357

Query: 53 ELDF 42
LDF
Sbjct: 1358 GLDF 1361


>tr|Q0WLI8|Q0WLI8_ARATH Putative uncharacterized protein At5g20610
(Fragment) OS=Arabidopsis thaliana GN=At5g20610 PE=2
SV=1
Length = 794

Score = 49.7 bits (117), Expect = 8e-05
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Frame = -2

Query: 338 MENAFQKDEKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAG 159
+E+A + E + + + D + + + KE + +RD++ + VA
Sbjct: 134 LESALKSVEMLEATASEDEEDRKKHGDKDKYFITPMKETVPSCSRDVA-------ESVAC 186

Query: 158 EFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGGEL 48
EFL+ML FGL S+ EP+SPR RLLR+FE E L G L
Sbjct: 187 EFLDMLGIEHSPFGLSSESEPESPRERLLREFEMETLAAGSL 228


>tr|A7PE22|A7PE22_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016501001
PE=4 SV=1
Length = 839

Score = 49.7 bits (117), Expect = 8e-05
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 5/50 (10%)
Frame = -2

Query: 188 LDEEVDLVAGEFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGG 54
LD+ + VA EFL+ML FGL S+ EP+SPR RLLRQFE + L G
Sbjct: 222 LDDVTESVASEFLDMLGIEHSPFGLSSESEPESPRERLLRQFEKDTLASG 271


>tr|A5B9N2|A5B9N2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_009913 PE=4 SV=1
Length = 1134

Score = 49.7 bits (117), Expect = 8e-05
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 5/50 (10%)
Frame = -2

Query: 188 LDEEVDLVAGEFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGG 54
LD+ + VA EFL+ML FGL S+ EP+SPR RLLRQFE + L G
Sbjct: 490 LDDVTESVASEFLDMLGIEHSPFGLSSESEPESPRERLLRQFEKDTLASG 539


>tr|A7P4P3|A7P4P3_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032229001
PE=4 SV=1
Length = 998

Score = 44.7 bits (104), Expect = 0.003
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = -2

Query: 197 SPDLDEEVDLVAGEFLNML-----DFGLDSDGEPDSPRARLLRQFEYEGLFGGELDF 42
S LD+ + VA EFL ML FGL +D + +SPR LLRQFE + L G F
Sbjct: 447 SLSLDDATESVASEFLKMLGIEDSSFGLSADSDLESPRECLLRQFEKDNLASGNFIF 503


>tr|A5AQ49|A5AQ49_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012140 PE=4 SV=1
Length = 1141

Score = 44.7 bits (104), Expect = 0.003
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = -2

Query: 197 SPDLDEEVDLVAGEFLNML-----DFGLDSDGEPDSPRARLLRQFEYEGLFGGELDF 42
S LD+ + VA EFL ML FGL +D + +SPR LLRQFE + L G F
Sbjct: 485 SLSLDDATESVASEFLKMLGIEDSSFGLSADSDLESPRECLLRQFEKDNLASGNFIF 541


>tr|Q7Y219|Q7Y219_ARATH Putative uncharacterized protein At5g26160
OS=Arabidopsis thaliana GN=At5g26160 PE=2 SV=1
Length = 976

Score = 44.3 bits (103), Expect = 0.003
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -2

Query: 197 SPDLDEEVDLVAGEFLNMLD-----FGLDSDGEPDSPRARLLRQFEYEGLFGG 54
S LD+ + VA +FLNML+ + SDGEP SPR LLR+FE E G
Sbjct: 438 SLSLDDITESVANDFLNMLELEECSYVYTSDGEPTSPRESLLREFEKEAFASG 490


>tr|A2ZX67|A2ZX67_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_003139 PE=4 SV=1
Length = 1153

Score = 42.4 bits (98), Expect = 0.013
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = -2

Query: 197 SPDLDEEVDLVAGEFLNMLDF-----GLDSDGEPDSPRARLLRQFEYEGLFGGE----LD 45
S +D D VA EFLNML G S + +SPR RL +QFE E L G LD
Sbjct: 515 SRSMDASSDFVASEFLNMLGIEHSPLGATSGSDSESPRERLWKQFEKEALASGNGILGLD 574

Query: 44 FRPDS 30
F ++
Sbjct: 575 FEDEA 579


>tr|Q9RYW7|Q9RYW7_DEIRA Putative uncharacterized protein
OS=Deinococcus radiodurans GN=DR_A0189 PE=4 SV=1
Length = 504

Score = 35.0 bits (79), Expect = 2.1
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = -2

Query: 314 EKSDVVMDNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGEFLNMLDF 135
EK VMD + +++++D + D QP L G + +P +D +V L AG+F ++
Sbjct: 412 EKVGRVMDVI---IDEFNDDE---DDQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGLVKI 465

Query: 134 GLDSDGEPDSPRARLLRQFEYEGLFG 57
G D RAR+ EY+ LFG
Sbjct: 466 G-------DIVRARIEDSDEYD-LFG 483


>tr|O62129|O62129_CAEEL Protein F02H6.2, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=F02H6.2
PE=2 SV=2
Length = 478

Score = 35.0 bits (79), Expect = 2.1
Identities = 20/90 (22%), Positives = 44/90 (48%)
Frame = -2

Query: 293 DNVKNKVEDWSDSKEAWDSQPKEELSGFARDMSPDLDEEVDLVAGEFLNMLDFGLDSDGE 114
+ V +V++ D E + +E+ GF +++ D+D+E + +DFG D +G+
Sbjct: 47 EEVDEEVDEEEDHAEDEERDTDDEVEGFDKEIVSDIDDEE-------VPQIDFGYDKNGD 99

Query: 113 PDSPRARLLRQFEYEGLFGGELDFRPDSYK 24
P + L++ + + L+ +S+K
Sbjct: 100 PQQLESPALQRIDVGIVLDELLETIEESHK 129