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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912493
Clone id YMU001_000019_B06
Library
Length 132
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATTACCTGCAGGTACTCTAAGCTTGCCATTTCTCAGCTCTGAGATGGCCGCAAGAGGCC
AGATAAAACCACGCCATGCAAGACGGGAGGCCAGAGGAACATCGATGATGATCTCTTTCT
CTGCAGGCTTCT
■■Homology search results ■■ -
sp_hit_id P12356
Definition sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii
Align length 37
Score (bit) 57.0
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912493|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B06.
         (132 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, ...    57   3e-08
sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, ...    57   3e-08
sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, ...    55   8e-08
sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, ...    54   2e-07
sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III O...    52   9e-07
sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, ...    51   2e-06
sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III O...    49   8e-06
sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III O...    47   2e-05
sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III O...    47   2e-05
sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III O...    47   3e-05
sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III O...    47   3e-05
sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III O...    46   5e-05
sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III O...    46   7e-05
sp|Q9TLW6|PSAF_CYACA Photosystem I reaction center subunit III O...    45   1e-04
sp|Q7NH05|PSAF_GLOVI Photosystem I reaction center subunit III O...    45   1e-04
sp|P29256|PSAF_SYNY3 Photosystem I reaction center subunit III O...    43   6e-04
sp|P49483|PSAF_ODOSI Photosystem I reaction center subunit III O...    39   0.010
sp|Q9X7I4|PSAF_PROMA Photosystem I reaction center subunit III O...    36   0.052
sp|O31127|PSAF_MASLA Photosystem I reaction center subunit III O...    36   0.052
sp|P31091|PSAF_ANAVT Photosystem I reaction center subunit III O...    35   0.12 
sp|P58564|PSAF_ANASP Photosystem I reaction center subunit III O...    34   0.20 

>sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III,
           chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1
           SV=1
          Length = 227

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVPLA++LAW+G  WPLAA+ EL+ G L
Sbjct: 179 KPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTL 215


>sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III,
           chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1
          Length = 221

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KPA KEIIIDVPLASR+ +RGFIWP+AA  E  NG L
Sbjct: 180 KPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDL 216


>sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III,
           chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1
          Length = 231

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 26/37 (70%), Positives = 30/37 (81%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVPLAS L +RGF WP+AA  EL NG+L
Sbjct: 190 KPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGEL 226


>sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III,
           chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRVP 11
           KP +KEIIIDVPLA++L +RGF WP+AA  E  NG+L  P
Sbjct: 191 KPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELIDP 230


>sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III
           OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1
          Length = 187

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP EKEII+DVPLA +    GF WPLAAI EL +G+L
Sbjct: 139 KPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGEL 175


>sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III,
           chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2
          Length = 235

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 26/39 (66%), Positives = 30/39 (76%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRV 14
           KPA +EIIIDV LA+R+  RGFIWP+AA  EL NG L V
Sbjct: 190 KPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVV 228


>sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III
           OS=Porphyra purpurea GN=psaF PE=3 SV=1
          Length = 185

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRVP 11
           KP EKEII+DVPLA +    GF WPLAA  E  +G+L  P
Sbjct: 137 KPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAP 176


>sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III
           OS=Porphyra yezoensis GN=psaF PE=3 SV=1
          Length = 181

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP EKEII+DVPLA +    GF WPLAA  E  +G+L
Sbjct: 133 KPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQL 169


>sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III
           OS=Cyanophora paradoxa GN=psaF PE=3 SV=1
          Length = 186

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = -3

Query: 121 EKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           EKEIIID+P+A +   +GF+WPLAA+ E  +GKL
Sbjct: 141 EKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKL 174


>sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III
           OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF
           PE=1 SV=1
          Length = 164

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = -3

Query: 121 EKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           EKEIIIDVPLA +    GF WPLAA+ EL +G+L
Sbjct: 119 EKEIIIDVPLAIKCMLTGFAWPLAALKELASGEL 152
tr_hit_id A9TWD4
Definition tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 43
Score (bit) 61.6
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912493|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B06.
         (132 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella paten...    62   2e-08
tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella paten...    59   9e-08
tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whol...    58   3e-07
tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|Q9TI78|Q9TI78_LACSA Photosystem I subunit III (Fragment) OS=L...    57   3e-07
tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F (Frag...    57   5e-07
tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III...    57   5e-07
tr|Q84QE7|Q84QE7_TOBAC Putative photosystem I subunit III OS=Nic...    56   8e-07
tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment) OS=Physcomit...    56   8e-07
tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment) OS=Physcomit...    56   8e-07
tr|Q9XQB4|Q9XQB4_PHAAU Photosystem I reaction center subunit III...    55   2e-06
tr|B7FF89|B7FF89_MEDTR Putative uncharacterized protein (Fragmen...    55   2e-06
tr|B6SRI3|B6SRI3_MAIZE Photosystem I reaction center subunit III...    52   1e-05
tr|Q2EHP8|Q2EHP8_POPCA Putative chloroplast photosystem I subuni...    52   2e-05
tr|A9PI20|A9PI20_POPTR Putative uncharacterized protein OS=Popul...    52   2e-05
tr|Q9SLW9|Q9SLW9_TOBAC mRNA, 327 bp sequence (Fragment) OS=Nicot...    51   3e-05
tr|A6MVU7|A6MVU7_RHDSA Photosystem I subunit III OS=Rhodomonas s...    51   3e-05
tr|B4VLW3|B4VLW3_9CYAN Photosystem I reaction center subunit III...    49   1e-04
tr|B5W2N7|B5W2N7_SPIMA Photosystem I reaction center protein Psa...    48   2e-04
tr|Q9ZSU5|Q9ZSU5_ORYSA Photosystem-1 F subunit OS=Oryza sativa G...    48   3e-04
tr|Q8S7H8|Q8S7H8_ORYSJ cDNA clone:001-016-D02, full insert seque...    48   3e-04
tr|Q0DN30|Q0DN30_ORYSJ Os03g0778100 protein (Fragment) OS=Oryza ...    48   3e-04
tr|A2XMI1|A2XMI1_ORYSI Putative uncharacterized protein OS=Oryza...    48   3e-04
tr|B8HVK4|B8HVK4_9CHRO Photosystem I reaction center protein Psa...    47   4e-04
tr|Q31NT9|Q31NT9_SYNE7 Photosystem I reaction center subunit III...    46   8e-04
tr|Q4G3B9|Q4G3B9_EMIHU Photosystem I subunit III OS=Emiliania hu...    46   8e-04
tr|A0T0M1|A0T0M1_PHATR Photosystem I protein F OS=Phaeodactylum ...    46   8e-04
tr|B0JUV3|B0JUV3_MICAN Photosystem I subunit III OS=Microcystis ...    46   0.001

>tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151795 PE=4 SV=1
          Length = 212

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 30/43 (69%), Positives = 34/43 (79%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRVPAGN 2
           KP EKEIIIDVPLA R+  +GF WPLAAI ELR+GKL   +GN
Sbjct: 164 KPTEKEIIIDVPLALRVMSKGFTWPLAAIGELRSGKLVEKSGN 206


>tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130189 PE=4 SV=1
          Length = 240

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 29/43 (67%), Positives = 33/43 (76%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRVPAGN 2
           KP EKEIIIDVPLA R+  +GF WPLAAI ELR+GKL   + N
Sbjct: 192 KPTEKEIIIDVPLALRVMSKGFTWPLAAIGELRSGKLVEKSAN 234


>tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035532001 PE=4 SV=1
          Length = 221

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVPLASRL +RGFIWP+AA  E  NG L
Sbjct: 180 KPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDL 216


>tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039382 PE=4 SV=1
          Length = 221

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 27/37 (72%), Positives = 30/37 (81%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVPLASRL +RGFIWP+AA  E  NG L
Sbjct: 180 KPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDL 216


>tr|Q9TI78|Q9TI78_LACSA Photosystem I subunit III (Fragment)
           OS=Lactuca sativa GN=psaF PE=2 SV=1
          Length = 140

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRVPA 8
           KP  KEIIIDVPLAS L +RGFIWP+AA  EL NG+L  P+
Sbjct: 99  KPTMKEIIIDVPLASSLVFRGFIWPVAAYRELLNGELIDPS 139


>tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F
           (Fragment) OS=Chlamydomonas incerta GN=PsaF PE=2 SV=1
          Length = 215

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVPLA++LAW+G  WPLAA+ EL+ G L
Sbjct: 167 KPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTL 203


>tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 253

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVP+ASR+ WRG IWPL A++ +R+G L
Sbjct: 205 KPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTL 241


>tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 175

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVP+ASR+ WRG IWPL A++ +R+G L
Sbjct: 127 KPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTL 163


>tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III
           OS=Chlamydomonas reinhardtii GN=PSAF PE=4 SV=1
          Length = 227

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKL 20
           KP +KEIIIDVPLA++LAW+G  WPLAA+ EL+ G L
Sbjct: 179 KPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTL 215


>tr|Q84QE7|Q84QE7_TOBAC Putative photosystem I subunit III
           OS=Nicotiana tabacum PE=2 SV=1
          Length = 222

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = -3

Query: 130 KPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLRVP 11
           KP  KEIIIDVPLA++L WRGF WP+AA  E  NG+L  P
Sbjct: 181 KPTMKEIIIDVPLANKLIWRGFSWPVAAYREYLNGELIDP 220