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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912494
Clone id YMU001_000019_B07
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGTGCAGATCCCCATACCTTTAAACACTAGAATGTCTACTGGGTCCAAGGCCCCATTGC
CAGCTCCTGGAGGTGTGGAACTCCCTCTGTACAAAGTTGCACATTGCAGAGCAGGTGACA
AAGGCAATGATGTGAATTTTAGTCTCATTCCTCACTGTCCAACAGACCTCCTACGGTTGC
AATCAATCATCACAAAAGACTGGGTGAAAAGGGTAACAGGACGCCTCTTTCTTGGTCATC
ACATTGGGAATGACACTTCAAGTAGCCAGACTAGAGGTCTGGTACATGATGAACATGACA
ACGCCAGAAGCATTGAAATATATGTTGCAACAGGGATCCACGCCATGAATATTGTGGTGA
GAAATGCTTTAGATGGCGGTGTCACATGCTCTCGCCGTTTTGATAGACATGGAAAGTCCC
TGTCAGATCTTATCCTCTGTCAAAGAGTTACATTACCTGTTGAAGAAATAAAAACCTGCT
GAGAGAGCTTTTTAGCCTTTCAAGTCACGTCCTTGCAGAGGATCTGTGCTGGGGCAAACA
GAACATATTGCTATAGCTGAAGAAAACTGC
■■Homology search results ■■ -
sp_hit_id Q978Z2
Definition sp|Q978Z2|RS3A_THEVO 30S ribosomal protein S3Ae OS=Thermoplasma volcanium
Align length 81
Score (bit) 33.1
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912494|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B07.
         (570 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q978Z2|RS3A_THEVO 30S ribosomal protein S3Ae OS=Thermoplasma ...    33   0.99 

>sp|Q978Z2|RS3A_THEVO 30S ribosomal protein S3Ae OS=Thermoplasma
           volcanium GN=rps3Ae PE=3 SV=1
          Length = 215

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 24/81 (29%), Positives = 40/81 (49%)
 Frame = +3

Query: 225 LFLGHHIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFD 404
           +F+GH+IG+D      R LV    +    IE    +    + + +    DG VT +++F 
Sbjct: 82  IFIGHYIGDD----YIRRLVRRRKERIDIIEDVKTSDNSIITVKIVVVTDGKVTNTKKFQ 137

Query: 405 RHGKSLSDLILCQRVTLPVEE 467
              K L+D IL + ++LP  E
Sbjct: 138 IR-KVLTDFILNKGLSLPYSE 157
tr_hit_id B8B5R2
Definition tr|B8B5R2|B8B5R2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 148
Score (bit) 153.0
E-value 7.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912494|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B07.
         (570 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8B5R2|B8B5R2_ORYSI Putative uncharacterized protein OS=Oryza...   153   7e-36
tr|Q7EY96|Q7EY96_ORYSJ Os07g0457300 protein OS=Oryza sativa subs...   152   1e-35
tr|A3BJF2|A3BJF2_ORYSJ Putative uncharacterized protein OS=Oryza...   152   1e-35
tr|Q9LQ79|Q9LQ79_ARATH T1N6.18 protein OS=Arabidopsis thaliana G...   145   2e-33
tr|Q8GZ85|Q8GZ85_ARATH Putative uncharacterized protein At1g0177...   145   2e-33
tr|A5BP01|A5BP01_VITVI Putative uncharacterized protein OS=Vitis...   144   3e-33
tr|A7PZ91|A7PZ91_VITVI Chromosome chr15 scaffold_40, whole genom...   142   1e-32
tr|B6U6X1|B6U6X1_MAIZE Propionyl-CoA carboxylase OS=Zea mays PE=...   140   5e-32
tr|A9SLF8|A9SLF8_PHYPA Predicted protein (Fragment) OS=Physcomit...   133   6e-30
tr|Q54RD7|Q54RD7_DICDI Putative uncharacterized protein OS=Dicty...   100   4e-20
tr|Q1LAT6|Q1LAT6_RALME Putative uncharacterized protein OS=Ralst...    67   9e-10
tr|B1XVV1|B1XVV1_POLNS Putative uncharacterized protein OS=Polyn...    65   3e-09
tr|B7WSR8|B7WSR8_COMTE Putative uncharacterized protein OS=Comam...    62   2e-08
tr|B7RS88|B7RS88_9RHOB Beta-lactamase OS=Roseobacter sp. GAI101 ...    61   4e-08
tr|Q46Q40|Q46Q40_RALEJ Putative uncharacterized protein OS=Ralst...    60   6e-08
tr|Q39HF8|Q39HF8_BURS3 Putative uncharacterized protein OS=Burkh...    60   6e-08
tr|Q2J006|Q2J006_RHOP2 Beta-lactamase OS=Rhodopseudomonas palust...    60   6e-08
tr|A1TSL1|A1TSL1_ACIAC Putative uncharacterized protein OS=Acido...    60   6e-08
tr|B2AHL9|B2AHL9_CUPTR Putative uncharacterized protein OS=Cupri...    60   1e-07
tr|B0UB06|B0UB06_METS4 Putative uncharacterized protein OS=Methy...    59   2e-07
tr|A7CBY7|A7CBY7_BURPI Putative uncharacterized protein OS=Ralst...    58   3e-07
tr|Q46SS5|Q46SS5_RALEJ Putative uncharacterized protein OS=Ralst...    58   4e-07
tr|Q0K2J5|Q0K2J5_RALEH Putative uncharacterized protein h16_B098...    58   4e-07
tr|B8IQ95|B8IQ95_METNO Putative uncharacterized protein OS=Methy...    58   4e-07
tr|B1FUH0|B1FUH0_9BURK Putative uncharacterized protein OS=Burkh...    58   4e-07
tr|A2VR38|A2VR38_9BURK Putative uncharacterized protein OS=Burkh...    58   4e-07
tr|B4E699|B4E699_BURCJ Putative uncharacterized protein OS=Burkh...    57   5e-07
tr|A3XCT1|A3XCT1_9RHOB Putative uncharacterized protein OS=Roseo...    57   5e-07
tr|B7YY51|B7YY51_VARPD Putative uncharacterized protein OS=Vario...    57   7e-07
tr|B1T072|B1T072_9BURK Putative uncharacterized protein OS=Burkh...    57   7e-07

>tr|B8B5R2|B8B5R2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_25878 PE=4 SV=1
          Length = 776

 Score =  153 bits (386), Expect = 7e-36
 Identities = 82/148 (55%), Positives = 102/148 (68%)
 Frame = +3

Query: 15   IPLNTRMSTGSKAPLPAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIIT 194
            +PLNT M T   A +P+P G ++PLY VAH RAGDKGND+NFS+IPH P D+ RL+++IT
Sbjct: 634  LPLNTNMDTLPSA-VPSPSGTKIPLYHVAHSRAGDKGNDLNFSIIPHFPDDIGRLRAVIT 692

Query: 195  KDWVKRVTGRLFLGHHIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALD 374
            +DWVK     L        D  ++Q R   +D  +N  SIEIY   GI ++N+VVRN LD
Sbjct: 693  RDWVKNAVSPLLDSSSFPAD-RANQVR---YDPLENV-SIEIYDVPGISSLNVVVRNILD 747

Query: 375  GGVTCSRRFDRHGKSLSDLILCQRVTLP 458
            GGV  SRR DRHGK+LSDLILCQ V LP
Sbjct: 748  GGVNSSRRIDRHGKTLSDLILCQNVVLP 775


>tr|Q7EY96|Q7EY96_ORYSJ Os07g0457300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0027N13.128 PE=2 SV=1
          Length = 637

 Score =  152 bits (385), Expect = 1e-35
 Identities = 82/148 (55%), Positives = 103/148 (69%)
 Frame = +3

Query: 15  IPLNTRMSTGSKAPLPAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIIT 194
           +PLNT M T   A +P+P G ++PLY VAH RAGDKGND+NFS+IPH P D+ RL+++IT
Sbjct: 495 LPLNTNMDTLPSA-VPSPSGTKIPLYHVAHSRAGDKGNDLNFSIIPHFPDDIGRLRAVIT 553

Query: 195 KDWVKRVTGRLFLGHHIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALD 374
           +DWVK     L L   +     ++Q R   +D  +N  SIEIY   GI ++N+VVRN LD
Sbjct: 554 RDWVKNAVSPL-LDSSLFPADRANQVR---YDPLENV-SIEIYDVPGISSLNVVVRNILD 608

Query: 375 GGVTCSRRFDRHGKSLSDLILCQRVTLP 458
           GGV  SRR DRHGK+LSDLILCQ V LP
Sbjct: 609 GGVNSSRRIDRHGKTLSDLILCQNVVLP 636


>tr|A3BJF2|A3BJF2_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_023174 PE=4 SV=1
          Length = 748

 Score =  152 bits (385), Expect = 1e-35
 Identities = 82/148 (55%), Positives = 103/148 (69%)
 Frame = +3

Query: 15   IPLNTRMSTGSKAPLPAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIIT 194
            +PLNT M T   A +P+P G ++PLY VAH RAGDKGND+NFS+IPH P D+ RL+++IT
Sbjct: 606  LPLNTNMDTLPSA-VPSPSGTKIPLYHVAHSRAGDKGNDLNFSIIPHFPDDIGRLRAVIT 664

Query: 195  KDWVKRVTGRLFLGHHIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALD 374
            +DWVK     L L   +     ++Q R   +D  +N  SIEIY   GI ++N+VVRN LD
Sbjct: 665  RDWVKNAVSPL-LDSSLFPADRANQVR---YDPLENV-SIEIYDVPGISSLNVVVRNILD 719

Query: 375  GGVTCSRRFDRHGKSLSDLILCQRVTLP 458
            GGV  SRR DRHGK+LSDLILCQ V LP
Sbjct: 720  GGVNSSRRIDRHGKTLSDLILCQNVVLP 747


>tr|Q9LQ79|Q9LQ79_ARATH T1N6.18 protein OS=Arabidopsis thaliana
           GN=T1N6.18 PE=4 SV=1
          Length = 629

 Score =  145 bits (365), Expect = 2e-33
 Identities = 76/132 (57%), Positives = 88/132 (66%)
 Frame = +3

Query: 60  PAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLFLGH 239
           PAP G ++PLY VAH RAGDKGND+NFS+IPH   D+ RL+ IIT  WVK V   L    
Sbjct: 507 PAPSGQKIPLYSVAHSRAGDKGNDINFSIIPHYSPDVERLKLIITPQWVKHVMSVLL--- 563

Query: 240 HIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRHGKS 419
                 S+S    L     D   S+EIY   GIHAMN+VVRN LDGGV CSRR DRHGK+
Sbjct: 564 ------STSSFLELDAKPMDENVSVEIYDVEGIHAMNVVVRNILDGGVNCSRRIDRHGKT 617

Query: 420 LSDLILCQRVTL 455
           +SDLILCQ+V L
Sbjct: 618 ISDLILCQQVVL 629


>tr|Q8GZ85|Q8GZ85_ARATH Putative uncharacterized protein
           At1g01770/T1N6_13 OS=Arabidopsis thaliana
           GN=At1g01770/T1N6_13 PE=2 SV=1
          Length = 632

 Score =  145 bits (365), Expect = 2e-33
 Identities = 76/132 (57%), Positives = 88/132 (66%)
 Frame = +3

Query: 60  PAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLFLGH 239
           PAP G ++PLY VAH RAGDKGND+NFS+IPH   D+ RL+ IIT  WVK V   L    
Sbjct: 509 PAPSGQKIPLYSVAHSRAGDKGNDINFSIIPHYSPDVERLKLIITPQWVKHVMSVLL--- 565

Query: 240 HIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRHGKS 419
                 S+S    L     D   S+EIY   GIHAMN+VVRN LDGGV CSRR DRHGK+
Sbjct: 566 ------STSSFLELDAKPMDENVSVEIYDVEGIHAMNVVVRNILDGGVNCSRRIDRHGKT 619

Query: 420 LSDLILCQRVTL 455
           +SDLILCQ+V L
Sbjct: 620 ISDLILCQQVVL 631


>tr|A5BP01|A5BP01_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006289 PE=4 SV=1
          Length = 705

 Score =  144 bits (363), Expect = 3e-33
 Identities = 74/133 (55%), Positives = 90/133 (67%)
 Frame = +3

Query: 60  PAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLFLGH 239
           PAP G ++PLY VAH R GDKGND+NFS+IPH P D+ RL+ IIT +WVK     L L  
Sbjct: 576 PAPSGQKIPLYSVAHSRTGDKGNDLNFSIIPHFPPDIERLKIIITPEWVKAAVSTL-LNT 634

Query: 240 HIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRHGKS 419
               D+ +   R     EH     +EIY   GIH++NI+VRN LDGGV CSRR DRHGK+
Sbjct: 635 SSFPDSDAINKRDKWVAEHVK---VEIYEVKGIHSLNILVRNILDGGVNCSRRIDRHGKT 691

Query: 420 LSDLILCQRVTLP 458
           +SDLILCQ+V LP
Sbjct: 692 ISDLILCQKVVLP 704


>tr|A7PZ91|A7PZ91_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026790001
           PE=4 SV=1
          Length = 640

 Score =  142 bits (358), Expect = 1e-32
 Identities = 72/133 (54%), Positives = 90/133 (67%)
 Frame = +3

Query: 60  PAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLFLGH 239
           PAP G ++PLY VAH R GDKGND+NFS+IPH P D+ RL+ IIT +WVK     L    
Sbjct: 515 PAPSGQKIPLYSVAHSRTGDKGNDLNFSIIPHFPPDIERLKIIITPEWVKAAVSTLL--- 571

Query: 240 HIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRHGKS 419
               +TSS      + ++ D   +  IY   GIH++NI+VRN LDGGV CSRR DRHGK+
Sbjct: 572 ----NTSSFPDSDAI-NKRDKWVAEHIYEVKGIHSLNILVRNILDGGVNCSRRIDRHGKT 626

Query: 420 LSDLILCQRVTLP 458
           +SDLILCQ+V LP
Sbjct: 627 ISDLILCQKVVLP 639


>tr|B6U6X1|B6U6X1_MAIZE Propionyl-CoA carboxylase OS=Zea mays PE=2
           SV=1
          Length = 573

 Score =  140 bits (353), Expect = 5e-32
 Identities = 74/136 (54%), Positives = 91/136 (66%)
 Frame = +3

Query: 51  APLPAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLF 230
           +P PA  G  + LY VAH RAGDKGND+NFS+IPH P D+ RL+S+IT DWVK     L 
Sbjct: 442 SPAPALPGKRVALYHVAHSRAGDKGNDMNFSVIPHSPADIGRLRSVITPDWVKNAVSPL- 500

Query: 231 LGHHIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRH 410
           LG     D    Q R  + +      ++EIY   GI ++N+VVRN LDGGV CSRR DRH
Sbjct: 501 LGSSSFPDERDVQHRNKLLE----LVTVEIYYVPGISSLNVVVRNILDGGVNCSRRIDRH 556

Query: 411 GKSLSDLILCQRVTLP 458
           GK+LSD+ILCQ+V LP
Sbjct: 557 GKTLSDVILCQQVILP 572


>tr|A9SLF8|A9SLF8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_131761 PE=4 SV=1
          Length = 608

 Score =  133 bits (335), Expect = 6e-30
 Identities = 71/133 (53%), Positives = 86/133 (64%)
 Frame = +3

Query: 60  PAPGGVELPLYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLFLGH 239
           PAP  V+LPLY+VAH R GDKGN +N S+IPHC  D+ RLQ IIT  WV      L L +
Sbjct: 480 PAPSAVKLPLYQVAHGRTGDKGNQLNVSIIPHCRADVARLQRIITPSWVVLAMKHL-LVN 538

Query: 240 HIGNDTSSSQTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRHGKS 419
           H G   +   TR L+  E      +E+Y   G+ A+N+VV++ LDGGVTCSRR DRHGK 
Sbjct: 539 HSGTSENEDVTRLLLLME----SLVEVYEVPGVAALNVVVKDVLDGGVTCSRRLDRHGKC 594

Query: 420 LSDLILCQRVTLP 458
           LSDLI  Q V LP
Sbjct: 595 LSDLIFSQIVVLP 607


>tr|Q54RD7|Q54RD7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0218468 PE=4 SV=1
          Length = 729

 Score =  100 bits (250), Expect = 4e-20
 Identities = 55/124 (44%), Positives = 70/124 (56%)
 Frame = +3

Query: 87  LYKVAHCRAGDKGNDVNFSLIPHCPTDLLRLQSIITKDWVKRVTGRLFLGHHIGNDTSSS 266
           LY + H R+GDKG+  N SLIP+   D  R++ ++TK+WV ++ G L  G          
Sbjct: 623 LYNICHSRSGDKGDTTNVSLIPYDIKDFDRIKKVVTKEWVSKIYGNLLRGEP-------- 674

Query: 267 QTRGLVHDEHDNARSIEIYVATGIHAMNIVVRNALDGGVTCSRRFDRHGKSLSDLILCQR 446
                          I IY   GI ++NIV+ NALDGGV  SRR DRHGK+LSDLIL Q 
Sbjct: 675 --------------DISIYSLPGISSLNIVLNNALDGGVCVSRRIDRHGKTLSDLILNQW 720

Query: 447 VTLP 458
           V LP
Sbjct: 721 VDLP 724