NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912502
Clone id YMU001_000019_B03
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGCAAAAAGCCCAAAGAATTCGAAGAGGGAGGACAGGCAGTAAAGTTTGAGCACTTTTC
AGTGTTTCGAGATGCTCCCAAGGCTTTAGCCTTTGTCCAATTGTTTGACATAGCATTTTC
TGGAGTCTGTTATAGAGAGCACTCCAAGATCAGACGAGCGGCATCCTTTTTGAAAGGTAA
TGCACGGACATGGTGGTCCACTCTATAGTTAAGGAAACAAGCACCGACAAAGTGGTTGAA
ATTTAAGAAACTCTTTAATGGCTAACACAAGAATACGAATGAGACATGATTACTGGCTGG
AACCATGTTCGGATGGTCAAGACAGAATCTTTGGATTCTTACAGTGAAAGATTCTGGGAA
ATTTTTCTACCTGTCTCATCCTTTAAGAAGGTCAGTTTTAAGGAGCCTATTGAACGATCT
TGTTGTGGGGTTTCCAAAGAAATTCGAGACTACTGTCCCGAAAGGAAGTTCGAGTCTATA
CAACAGTTGATGGGACACGCGAAGCGGGGATTTGCTATACATTCGGGTAAATTGACTTAC
TCATCGGATGAACCTTCAACGAGTCATAGCAGAAACATTCGACGAAGAAGACA
■■Homology search results ■■ -
sp_hit_id Q7BHI8
Definition sp|Q7BHI8|LKA1B_PASHA Leukotoxin OS=Pasteurella haemolytica
Align length 43
Score (bit) 30.8
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912502|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B03.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7BHI8|LKA1B_PASHA Leukotoxin OS=Pasteurella haemolytica GN=l...    31   5.3  
sp|P16535|LKA1A_PASHA Leukotoxin OS=Pasteurella haemolytica GN=l...    31   5.3  
sp|Q9EV34|LKTA8_PASHA Leukotoxin OS=Pasteurella haemolytica GN=l...    30   7.0  
sp|P0C083|LKTA6_PASHA Leukotoxin OS=Pasteurella haemolytica GN=l...    30   7.0  
sp|P0C084|LKA7A_PASHA Leukotoxin OS=Pasteurella haemolytica GN=l...    30   7.0  
sp|Q9EV29|LKA2D_PASHA Leukotoxin OS=Pasteurella haemolytica GN=l...    30   7.0  

>sp|Q7BHI8|LKA1B_PASHA Leukotoxin OS=Pasteurella haemolytica GN=lktA
           PE=1 SV=1
          Length = 953

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 413 SIGSLKLTF----LKDETGRKISQNLSL*ESKDSVLTIRTWFQ 297
           S G+ KL+F    LKD T  K+  NL +  SK   +TI+ WF+
Sbjct: 800 SDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFR 842


>sp|P16535|LKA1A_PASHA Leukotoxin OS=Pasteurella haemolytica GN=lktA
           PE=3 SV=1
          Length = 953

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 413 SIGSLKLTF----LKDETGRKISQNLSL*ESKDSVLTIRTWFQ 297
           S G+ KL+F    LKD T  K+  NL +  SK   +TI+ WF+
Sbjct: 800 SDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFR 842


>sp|Q9EV34|LKTA8_PASHA Leukotoxin OS=Pasteurella haemolytica GN=lktA
           PE=3 SV=1
          Length = 953

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 413 SIGSLKLTF----LKDETGRKISQNLSL*ESKDSVLTIRTWFQ 297
           S G+ KL+F    LKD T  K+  NL +  SK   +TI+ WF+
Sbjct: 800 SDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQDWFR 842


>sp|P0C083|LKTA6_PASHA Leukotoxin OS=Pasteurella haemolytica GN=lktA
           PE=3 SV=1
          Length = 953

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 413 SIGSLKLTF----LKDETGRKISQNLSL*ESKDSVLTIRTWFQ 297
           S G+ KL+F    LKD T  K+  NL +  SK   +TI+ WF+
Sbjct: 800 SDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQDWFR 842


>sp|P0C084|LKA7A_PASHA Leukotoxin OS=Pasteurella haemolytica GN=lktA
           PE=3 SV=1
          Length = 953

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 413 SIGSLKLTF----LKDETGRKISQNLSL*ESKDSVLTIRTWFQ 297
           S G+ KL+F    LKD T  K+  NL +  SK   +TI+ WF+
Sbjct: 800 SDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQDWFR 842


>sp|Q9EV29|LKA2D_PASHA Leukotoxin OS=Pasteurella haemolytica GN=lktA
           PE=3 SV=1
          Length = 953

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 413 SIGSLKLTF----LKDETGRKISQNLSL*ESKDSVLTIRTWFQ 297
           S G+ KL+F    LKD T  K+  NL +  SK   +TI+ WF+
Sbjct: 800 SDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQDWFR 842
tr_hit_id Q2QSZ8
Definition tr|Q2QSZ8|Q2QSZ8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 40.4
E-value 0.077
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912502|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_B03.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QSZ8|Q2QSZ8_ORYSJ Retrotransposon protein, putative, Ty3-gy...    40   0.077
tr|Q10LD6|Q10LD6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.9  
tr|B4FMK6|B4FMK6_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.5  
tr|Q7XQZ3|Q7XQZ3_ORYSJ OSJNBb0045P24.9 protein OS=Oryza sativa s...    35   3.2  
tr|Q5W6K0|Q5W6K0_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   3.2  
tr|Q2R3E8|Q2R3E8_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   3.2  
tr|B0EAK4|B0EAK4_ENTDI Putative uncharacterized protein OS=Entam...    35   3.2  
tr|Q6SLE2|Q6SLE2_COCHE Putative histidine kinase HHK5p OS=Cochli...    35   3.2  
tr|Q2QUR6|Q2QUR6_ORYSJ Retrotransposon protein, putative, Ty3-gy...    34   5.5  

>tr|Q2QSZ8|Q2QSZ8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g22370 PE=4 SV=1
          Length = 315

 Score = 40.4 bits (93), Expect = 0.077
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = +2

Query: 44  KFEHFSVFRDAPKALAFVQLFDIAFSGVCYREHSKIRRAASFLKGNARTWWSTL*LRKQA 223
           K   F  + DA K L +    +  FS     EH +++RA S  K  A  WW+ L      
Sbjct: 130 KIPSFLGYYDAEKYLDWEMTIEQKFSAHLVPEHHRVQRATSEFKDFAIIWWTGLAAEGVL 189

Query: 224 PTKWLKFKKL 253
           PT W + KK+
Sbjct: 190 PTTWEEIKKV 199


>tr|Q10LD6|Q10LD6_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g23080 PE=4 SV=1
          Length = 612

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +2

Query: 44  KFEHFSVFRDAPKALAFVQLFDIAFSGVCYREHSKIRRAASFLKGNARTWWSTL*LRKQA 223
           K   FS + DA K L +  + +  F+     E  ++R+A+S  K  A  WW  L      
Sbjct: 96  KIPSFSGYYDAEKYLDWEMIVEQKFNVHLVPEQHRVRQASSEFKDFAIMWWDGLSDGGVL 155

Query: 224 PTKWLKFKK 250
           PT W + KK
Sbjct: 156 PTTWEELKK 164


>tr|B4FMK6|B4FMK6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 441

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 122 GVCYREHSKIRRAASFLKGNARTWWSTL*LR--KQAPTKWLKFKKLFNG*H 268
           GVC  E +K+R A   L+G ARTWW        +    +W +FK  F G H
Sbjct: 96  GVC-SEVTKVRFATQQLRGPARTWWDHFLAMQPEDREVEWREFKAAFRGHH 145


>tr|Q7XQZ3|Q7XQZ3_ORYSJ OSJNBb0045P24.9 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0045P24.9 PE=4 SV=1
          Length = 1361

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 44  KFEHFSVFRDAPKALAFVQLFDIAFSGVCYREHSKIRRAASFLKGNARTWWSTL*LRKQA 223
           K   FS + DA K L +    +  F+     E  ++R+A+S  K  A  WW  L      
Sbjct: 333 KIPSFSGYYDAEKYLDWEMTVEQKFNAHLVPEQHRVRQASSEFKDFAIMWWVGLTAEGVL 392

Query: 224 PTKWLKFK 247
           PT W + K
Sbjct: 393 PTTWEELK 400


>tr|Q5W6K0|Q5W6K0_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           sub-class OS=Oryza sativa subsp. japonica
           GN=OSJNBb0085A04.15 PE=4 SV=1
          Length = 651

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 44  KFEHFSVFRDAPKALAFVQLFDIAFSGVCYREHSKIRRAASFLKGNARTWWSTL*LRKQA 223
           K   FS + DA K L +    +  F+     E  ++R+A+S  K  A  WW+ L      
Sbjct: 195 KIPSFSGYYDAEKYLDWEMTVEQKFNAHLVPEQYRVRQASSEFKDFAIMWWARLSDEGVL 254

Query: 224 PTKWLKFK 247
           PT W + K
Sbjct: 255 PTTWEELK 262


>tr|Q2R3E8|Q2R3E8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g32180 PE=4 SV=1
          Length = 820

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +2

Query: 44  KFEHFSVFRDAPKALAFVQLFDIAFSGVCYREHSKIRRAASFLKGNARTWWSTL*LRKQA 223
           K   FS + DA K L +    +  F+     E  ++R+A+S  K  A  WW+ L      
Sbjct: 176 KIPSFSGYYDAEKYLDWEMTVEQKFNAHLVPEQHRVRQASSEFKDFAIMWWAGLSDEGVL 235

Query: 224 PTKWLKFK 247
           PT W + K
Sbjct: 236 PTTWEELK 243


>tr|B0EAK4|B0EAK4_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_189010 PE=4 SV=1
          Length = 188

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +1

Query: 307 VRMVKTESLDSYSERFWEIFLPVSSFKKVSFKEPIERSCCGVSKEIRDYCPERKFESIQQ 486
           V+ +K + L ++ ER W+I   +  FKK S+K+ +      V+    DY  + K    Q+
Sbjct: 42  VKFIKIDDLYNFFERHWDIVCHLKEFKKESWKKEVY-----VTLSTSDYF-QNKINESQE 95

Query: 487 LMGHAKRGFA---IHSGKLTYSSDEPSTSH 567
                 + F    I +   T  SDEPS S+
Sbjct: 96  TSYWQLKDFTIPEITNKPKTQQSDEPSVSY 125


>tr|Q6SLE2|Q6SLE2_COCHE Putative histidine kinase HHK5p
            OS=Cochliobolus heterostrophus GN=HHK5 PE=4 SV=1
          Length = 1170

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 350  DSGKFFYLSHPLRRSVLRSLLNDLVVGFPKKFETTVPKGSSSL 478
            DSG  F+LS P+RR  L+ +L       P++ ETT P   + L
Sbjct: 1080 DSGMDFFLSKPIRRPALKHVLKTYCQTIPEEAETTPPNSVADL 1122


>tr|Q2QUR6|Q2QUR6_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g15350 PE=4 SV=2
          Length = 1202

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 41  VKFEHFSVFRDAPKALAFVQLFDIAFSGVCYREHSKIRRAASFLKGNARTWWSTL*LRKQ 220
           +K   FS + DA K L +    +  ++     E  ++R+A+S  K  A  WW+ L     
Sbjct: 29  LKIPSFSGYYDAEKYLDWEMTVEQKYNAHLVPEQHRVRQASSEFKDFAIMWWAGLSDEGV 88

Query: 221 APTKWLKFK 247
            PT W + K
Sbjct: 89  LPTTWEELK 97