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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912506
Clone id YMU001_000019_C05
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTAGGTAAGTAAAATTCTATTGTACATGGAGCTCGCTCTTTATTATTTATTATGTGCAG
AGCTATAAACAACTAGTATGTGATCTGTCGGAAAGCCATGTGATGTGAGTGTGCTGCGTG
TGTGTGTGGGGGGTTTTGAAAAAGAGAAGCGGTTGATTAGTTATAATAAATGCTAATGTA
TCTGCTGAGTATCTAGAGGATACTACTATCTAGCTAATGAGCTCCCAACCAAAGAAACCT
AAGGATGCGCCTGACATTGCGACGCGGGCCTTGTGCGCTCTCTGCCTGCATTCAGTGGGC
AAGGGGACTCAACTGGCGGTAACATACAATTGTACTGAATGCAGAGTGACGCAGTGAGTG
GCAGCGCATCTGTCGGA
■■Homology search results ■■ -
sp_hit_id Q9UPA5
Definition sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens
Align length 44
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912506|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_C05.
         (377 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=1 ...    31   1.7  
sp|A6W1U1|RIMM_MARMS Ribosome maturation factor rimM OS=Marinomo...    30   3.7  
sp|Q5R8W9|SEPP1_PONAB Selenoprotein P OS=Pongo abelii GN=SEPP1 P...    30   4.8  
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2...    29   8.3  
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2...    29   8.3  

>sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=1
           SV=3
          Length = 3926

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 220 SSQPKKPKDAPDIATRALCALCLHSVGKGTQLAVTYN-CTECRV 348
           S    KPK  P    RA+C LC   +  G++    YN CT CR+
Sbjct: 449 SKAAAKPKTMPK--ERAICPLCQAELNVGSKSPANYNTCTTCRL 490


>sp|A6W1U1|RIMM_MARMS Ribosome maturation factor rimM OS=Marinomonas
           sp. (strain MWYL1) GN=rimM PE=3 SV=1
          Length = 181

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 102 DVSVLRVCVGGFEKEKRLISY 164
           DV V+R C G F++E+RLI Y
Sbjct: 137 DVIVVRACEGSFDREERLIPY 157


>sp|Q5R8W9|SEPP1_PONAB Selenoprotein P OS=Pongo abelii GN=SEPP1 PE=2
           SV=2
          Length = 381

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 232 KKPKDAPDIATRALCALCLHSVGKGTQLAVTYNCTE 339
           K PKD+ ++A R+ C  C H + + T  A+T  C E
Sbjct: 288 KLPKDS-ELAPRSCCCHCRHLIFEKTGSAITUQCKE 322


>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2
           OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
          Length = 1191

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 359 THCVTLHSVQLYVTAS*VPLPTECRQRAHKARVAMSGASLGFFGWELIS*IVVSSRYSAD 180
           THC    S+ L V AS +P P   +   +  + AM   ++G +        V + ++  D
Sbjct: 701 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY--------VTNYQFRMD 752

Query: 179 TLAFII 162
           TLA+++
Sbjct: 753 TLAYVL 758


>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2
           OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2
          Length = 1188

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 359 THCVTLHSVQLYVTAS*VPLPTECRQRAHKARVAMSGASLGFFGWELIS*IVVSSRYSAD 180
           THC    S+ L V AS +P P   +   +  + AM   ++G +        V + ++  D
Sbjct: 702 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY--------VTNYQFRMD 753

Query: 179 TLAFII 162
           TLA+++
Sbjct: 754 TLAYVL 759
tr_hit_id A7PU24
Definition tr|A7PU24|A7PU24_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence OS=Vitis vinifera
Align length 41
Score (bit) 71.6
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912506|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_C05.
         (377 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PU24|A7PU24_VITVI Chromosome chr7 scaffold_31, whole genome...    72   2e-11
tr|B4F963|B4F963_MAIZE Putative uncharacterized protein OS=Zea m...    65   1e-09
tr|Q9LR79|Q9LR79_ARATH F21B7.6 (Putative uncharacterized protein...    65   2e-09
tr|Q0WR58|Q0WR58_ARATH Protein kinase (F21B7.6) like protein OS=...    65   2e-09
tr|Q6L550|Q6L550_ORYSJ Os05g0406800 protein OS=Oryza sativa subs...    63   6e-09
tr|Q5TKD1|Q5TKD1_ORYSJ Putative leucine-rich repeat family prote...    63   6e-09
tr|A2Y4K7|A2Y4K7_ORYSI Putative uncharacterized protein OS=Oryza...    63   6e-09
tr|B4FKX1|B4FKX1_MAIZE Putative uncharacterized protein OS=Zea m...    62   1e-08
tr|Q9ZT98|Q9ZT98_ARATH Leucine-rich repeat family protein OS=Ara...    61   3e-08
tr|A0MF48|A0MF48_ARATH Putative uncharacterized protein (Fragmen...    61   3e-08
tr|A9TFY2|A9TFY2_PHYPA Predicted protein (Fragment) OS=Physcomit...    46   0.001
tr|A9T1T0|A9T1T0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|Q2R0I6|Q2R0I6_ORYSJ Leucine Rich Repeat family protein, expre...    42   0.020
tr|A3CD98|A3CD98_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.020
tr|A2YAB3|A2YAB3_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|B4FPG5|B4FPG5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.044
tr|B4F960|B4F960_MAIZE Polygalacturonase inhibitor 1 OS=Zea mays...    40   0.044
tr|Q69TP3|Q69TP3_ORYSJ Os06g0478600 protein OS=Oryza sativa subs...    39   0.098
tr|A2YCZ0|A2YCZ0_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.098
tr|Q9LUN3|Q9LUN3_ARATH Leucine-rich repeat disease resistance pr...    37   0.37 

>tr|A7PU24|A7PU24_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023629001
           PE=4 SV=1
          Length = 373

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 26/41 (63%), Positives = 38/41 (92%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           PT ++PL++SLC+QYNCM+PPV++PCPL AG+++TRP +QC
Sbjct: 328 PTASIPLSSSLCLQYNCMVPPVQTPCPLKAGKQKTRPTAQC 368


>tr|B4F963|B4F963_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 401

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P+ +LP T SLC+ YNCM+PPV +PCP+ AG + TRPA QC
Sbjct: 356 PSSSLPSTVSLCLMYNCMVPPVYAPCPIKAGSQNTRPADQC 396


>tr|Q9LR79|Q9LR79_ARATH F21B7.6 (Putative uncharacterized protein
           At1g03440) OS=Arabidopsis thaliana GN=At1g03440 PE=2
           SV=1
          Length = 395

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 23/41 (56%), Positives = 35/41 (85%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P   +P+++SLC+QYNCM+PP+++PCPL AG ++TRP +QC
Sbjct: 350 PAAEIPVSSSLCLQYNCMVPPLQTPCPLKAGPQKTRPTTQC 390


>tr|Q0WR58|Q0WR58_ARATH Protein kinase (F21B7.6) like protein
           OS=Arabidopsis thaliana GN=At1g03440 PE=2 SV=1
          Length = 397

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 23/41 (56%), Positives = 35/41 (85%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P   +P+++SLC+QYNCM+PP+++PCPL AG ++TRP +QC
Sbjct: 352 PAAEIPVSSSLCLQYNCMVPPLQTPCPLKAGPQKTRPTTQC 392


>tr|Q6L550|Q6L550_ORYSJ Os05g0406800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1657_H11.5 PE=2 SV=1
          Length = 394

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P  +LP + SLC+ YNCM+PPV +PCPL AG   TRPA QC
Sbjct: 349 PASSLPSSVSLCLMYNCMVPPVYAPCPLKAGSTNTRPADQC 389


>tr|Q5TKD1|Q5TKD1_ORYSJ Putative leucine-rich repeat family protein
           (Putative uncharacterized protein) OS=Oryza sativa
           subsp. japonica GN=P0040B10.2 PE=4 SV=1
          Length = 393

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P  +LP + SLC+ YNCM+PPV +PCPL AG   TRPA QC
Sbjct: 348 PASSLPSSVSLCLMYNCMVPPVYAPCPLKAGSTNTRPADQC 388


>tr|A2Y4K7|A2Y4K7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19930 PE=4 SV=1
          Length = 393

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 25/41 (60%), Positives = 30/41 (73%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P  +LP + SLC+ YNCM+PPV +PCPL AG   TRPA QC
Sbjct: 348 PASSLPSSVSLCLMYNCMVPPVYAPCPLKAGSTNTRPADQC 388


>tr|B4FKX1|B4FKX1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 401

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P+ +LP T SLC+ YNCM+PPV +PCP+ A  + TRPA QC
Sbjct: 356 PSSSLPSTVSLCLMYNCMVPPVYAPCPIKARSQNTRPADQC 396


>tr|Q9ZT98|Q9ZT98_ARATH Leucine-rich repeat family protein
           OS=Arabidopsis thaliana GN=AT4g03010 PE=2 SV=1
          Length = 395

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 22/41 (53%), Positives = 34/41 (82%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P   +P+++SLC+QYNCM+ PV++PCP+ AG ++TRP +QC
Sbjct: 350 PAADIPVSSSLCLQYNCMVLPVQTPCPVKAGLQKTRPTTQC 390


>tr|A0MF48|A0MF48_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 396

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 22/41 (53%), Positives = 34/41 (82%)
 Frame = -2

Query: 376 PTDALPLTASLCIQYNCMLPPVESPCPLNAGRERTRPASQC 254
           P   +P+++SLC+QYNCM+ PV++PCP+ AG ++TRP +QC
Sbjct: 350 PAADIPVSSSLCLQYNCMVLPVQTPCPVKAGLQKTRPTTQC 390