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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912507
Clone id YMU001_000019_C06
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACATTCATGTGTTTAACTAAATTGAGATGTTTGCAATACTAAGGACATGTTTTTTGTTCC
AAAAGGTTTTCATGGCCGCCAAGTATCCCTTTTCTTTCTTTTGTATGGGTATGAAGATGA
TTGTCTAGTGAATGTGCTCTCTAGATATTGATGGATCAAGTCCTCATGTTTTTCTCTGTG
TTTCCTCAAACCTCAACCGCCAAACTTGAAATTGTTGTCTCTTCTTATTTTTTGTTGAAA
ATTCAGGCCAGTCTTCACCAAATGCTTCACTTATTGTGCCAGAGAGAGGCGATGGATCAG
TGGACACACCTCATGGATGAGATGCTGCGAGGACAACATCCCTTTTTGTCTCCGCTTGCT
CACAAAGTCGCATTGTGGAAGTCATCAACACCACAGAGTCCAATGGGGGTGCTAGATGTT
GATTGCTTCAGCTCTGAAAGTTGCAAGATCAAAAGTTGCTTTCTCCTCTCTCTCGCAGGT
ACTC
■■Homology search results ■■ -
sp_hit_id A0JMY5
Definition sp|A0JMY5|NFXL1_XENLA NF-X1-type zinc finger protein NFXL1 OS=Xenopus laevis
Align length 33
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912507|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_C06.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0JMY5|NFXL1_XENLA NF-X1-type zinc finger protein NFXL1 OS=Xe...    31   3.4  
sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2 OS=...    30   4.4  
sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 O...    30   4.4  
sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 O...    30   4.4  
sp|P52353|GH_HHV7J Glycoprotein H OS=Human herpesvirus 7 (strain...    30   4.4  
sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitocho...    30   5.7  
sp|P34706|SDC3_CAEEL Zinc finger protein sdc-3 OS=Caenorhabditis...    30   7.5  
sp|Q98GR1|LSPA_RHILO Lipoprotein signal peptidase OS=Rhizobium l...    30   7.5  
sp|Q96LZ2|MAGBA_HUMAN Melanoma-associated antigen B10 OS=Homo sa...    30   7.5  
sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200, chlorop...    29   9.8  
sp|P38931|SSN2_YEAST Mediator of RNA polymerase II transcription...    29   9.8  

>sp|A0JMY5|NFXL1_XENLA NF-X1-type zinc finger protein NFXL1
           OS=Xenopus laevis GN=nfxl1 PE=2 SV=1
          Length = 914

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 167 CFSLCFLKPQPPNLKLLSLLIFC*KFRPVFTKC 265
           C  LC   P PP  K++++  FC K +PV  +C
Sbjct: 273 CLLLCHPGPCPPCPKMVTITCFCQKAKPVPRRC 305


>sp|Q9QW30|NOTC2_RAT Neurogenic locus notch homolog protein 2
            OS=Rattus norvegicus GN=Notch2 PE=1 SV=1
          Length = 2471

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 325  LRGQHPFLSPLAHKVALWKSSTPQSPMGVLDV 420
            L+G+HP+L+P       W SS+P S     DV
Sbjct: 2408 LQGEHPYLTPSPESPDQWSSSSPHSASDWSDV 2439


>sp|O35516|NOTC2_MOUSE Neurogenic locus notch homolog protein 2 OS=Mus
            musculus GN=Notch2 PE=1 SV=1
          Length = 2470

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 325  LRGQHPFLSPLAHKVALWKSSTPQSPMGVLDV 420
            L+G+HP+L+P       W SS+P S     DV
Sbjct: 2407 LQGEHPYLTPSPESPDQWSSSSPHSASDWSDV 2438


>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2
            OS=Homo sapiens GN=NOTCH2 PE=1 SV=3
          Length = 2471

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 325  LRGQHPFLSPLAHKVALWKSSTPQSPMGVLDV 420
            L+G+HP+L+P       W SS+P S     DV
Sbjct: 2408 LQGEHPYLTPSPESPDQWSSSSPHSASDWSDV 2439


>sp|P52353|GH_HHV7J Glycoprotein H OS=Human herpesvirus 7 (strain
           JI) GN=GH PE=3 SV=1
          Length = 690

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 208 EIVVSSYFLLKIQASLHQMLHLLCQREAMDQWTHLMDEML 327
           EI  S  F  KI+  +H +L  LC    M  WTH++D ++
Sbjct: 424 EIGNSLVFQEKIKRKIHVLLASLCNPLEMYFWTHMLDNVM 463


>sp|P46199|IF2M_HUMAN Translation initiation factor IF-2,
           mitochondrial OS=Homo sapiens GN=MTIF2 PE=1 SV=2
          Length = 727

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 250 SLHQMLHLLCQREAMDQWTH 309
           ++++ LH LCQR A+ QW H
Sbjct: 16  TIYRQLHSLCQRRALRQWRH 35


>sp|P34706|SDC3_CAEEL Zinc finger protein sdc-3 OS=Caenorhabditis
            elegans GN=sdc-3 PE=2 SV=2
          Length = 2150

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 187  QTSTAKLEIVVSSYFLLKIQASLHQMLHLLCQREAMD 297
            Q S     +  SSY LL++   LHQ LH L   +A D
Sbjct: 2082 QCSIRNQSVYFSSYSLLELHGKLHQNLHELAPEDADD 2118


>sp|Q98GR1|LSPA_RHILO Lipoprotein signal peptidase OS=Rhizobium loti
           GN=lspA PE=3 SV=1
          Length = 168

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = -2

Query: 300 LIHRLSLAQ*VKHLVKTGLNFQQKI 226
           ++  ++L Q +KHLV+TGL FQ+K+
Sbjct: 11  VVAAIALDQWIKHLVETGLPFQEKL 35


>sp|Q96LZ2|MAGBA_HUMAN Melanoma-associated antigen B10 OS=Homo
           sapiens GN=MAGEB10 PE=2 SV=4
          Length = 347

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 225 LFFVENSGQSSPNASLIVPE----RGDGSVDTPHG*DAARTTSLFVSACSQSRIVEVIN 389
           L  +E   +S P+AS  + +      DG+ + PHG   A++TS   +A S +R  E +N
Sbjct: 29  LDILEEEEESPPSASACLKDVFQSSLDGASNNPHGLREAQSTSTSATAASHTRHPEGVN 87


>sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200,
           chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=1
           SV=2
          Length = 185

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 TDPSPLSGTISEAFGEDWPEFSTKNKKRQQFQVWRLRFEETQRK 170
           T PSP S ++S ++ +  P   T    R  F+  RLR +   R+
Sbjct: 5   TIPSPSSFSLSNSYNQTSPHSFTLRNSRSNFEFHRLRLDVESRR 48
tr_hit_id A5DI23
Definition tr|A5DI23|A5DI23_PICGU Putative uncharacterized protein OS=Pichia guilliermondii
Align length 55
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912507|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_C06.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5DI23|A5DI23_PICGU Putative uncharacterized protein OS=Pichi...    36   0.83 
tr|B4H3Z5|B4H3Z5_DROPE GL20762 OS=Drosophila persimilis GN=GL207...    34   3.1  
tr|B8BFT7|B8BFT7_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.3  
tr|Q54BK8|Q54BK8_DICDI Putative uncharacterized protein OS=Dicty...    33   5.3  
tr|Q5SBK8|Q5SBK8_9HYPO Putative metal-dependent hydrolase OS=Fus...    33   9.2  

>tr|A5DI23|A5DI23_PICGU Putative uncharacterized protein OS=Pichia
            guilliermondii GN=PGUG_02924 PE=4 SV=2
          Length = 1307

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +3

Query: 225  LFFVENSGQSSPNASLIVPERGDGSVDTPHG*DAARTTSLFVSACSQSRIVEVIN 389
            L FV NSG  +P    I+P R DGS+ +  G  AA+  + F+++ S S I   IN
Sbjct: 877  LLFV-NSGYEAPTPRTILPHRLDGSIVSDTGLKAAKVENNFINSSSNSNIKFQIN 930


>tr|B4H3Z5|B4H3Z5_DROPE GL20762 OS=Drosophila persimilis GN=GL20762
           PE=4 SV=1
          Length = 378

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 181 FPQTSTAKLEIVVSSYFLLKIQASLHQ----MLHLLCQREAMDQWTHLMDEMLRG 333
           FP  +T   E++  +   L  +  ++Q    +LHL  ++E  +QW  L+D+ L+G
Sbjct: 84  FPHMTTPATEVIYDTLAQLMQEQKIYQTSKGILHLYARKEQEEQWLRLLDKKLQG 138


>tr|B8BFT7|B8BFT7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32810 PE=4 SV=1
          Length = 207

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 254 FTKCFTYCARERRWISGHTSWMRCCEDNIPFCLRLLTKSHCGSHQHHR 397
           +T C  YC      +SG    + CC+ NIP  +   T S  G++ H R
Sbjct: 48  YTGCLCYCNDSSSAVSGDCDGVGCCQVNIPPDITDNTVSFDGTYSHER 95


>tr|Q54BK8|Q54BK8_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0192020 PE=4 SV=1
          Length = 247

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 175 SVFPQTSTAKLEIVVSSYFLLKIQASLHQMLHLLCQREAMDQWTHLMDEMLRGQH 339
           S+ P T+T           +LK++  L     LL + EA   WTH + ++ +GQH
Sbjct: 135 SIQPTTTTKTTTTTSEKAEVLKVEKQLAPRAFLLIKDEARFNWTHEIPKLKKGQH 189


>tr|Q5SBK8|Q5SBK8_9HYPO Putative metal-dependent hydrolase
           OS=Fusarium heterosporum GN=Eqi2 PE=4 SV=1
          Length = 490

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 105 MGMKMIV**MCSLDIDGSSPHVFLCVSSNLNRQT*NCCLFLFFVENSGQSSPNASLIVPE 284
           +G+K+     C   I G   H    V S   R    C LFL F E +G SSP +S ++  
Sbjct: 225 LGIKLFTTHYCKNRIFGKRRHQLNYVRSKTYRPRQACNLFLKFSETTGYSSPTSSSVMGA 284

Query: 285 RGDGS 299
           +   S
Sbjct: 285 QASAS 289