BP912508 |
Clone id |
YMU001_000019_C07 |
Library |
YMU01 |
Length |
601 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000019_C07. |
Accession |
BP912508 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GAGATGGAAGAGTTGAAGCAGAAGGCTTGTTTTATGGAAAGATACAAGAAAAGGCCAGAG GACAATAAAGAGGACGTACCAGACCTGGATTTAGAGTGGGAGCAAGAGTGTGGCATTTGC ATGGAAAACAACACCAAGGTTGTTTTACCAGACTGCAATCATGCCATGTGTCTCAAATGC TTCAGAGATTGGCATGCTCGGTCTCAATCCTGCCCTTTCTGTCGAGACAGTTTGAAACGA GTCAACTCGAAAGATTTGTGGATTTTTACGGAGTCGTGTGAAGTGCAAGATTCTGTAACA TTGACGAAAGACAGCCTAAAGAGGCTTTTTGTGTACATTGATAAGTTACCACTTTTGGTA TCAGAAAGCGTTTTTGCTGTCTATGATGCGCATCTCAAATGACATTCATGCTTGTACATT CTTGCTAGTAAATATGGTCTTTCTTTGGCGATGCAGTCTTAGCCAGACAGTCAGCCAAGA TAAATGTACATAATGTGACTGACTGATAAAGAGTCTCCTGAAGGGGTATCTCTTACTTCT CTAATGTATCCGAGTTTTATTAATTGTGGGTTTACAAGTCTTTGCACTTTAAAACTGGAA G |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6IV56 |
Definition |
sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio |
Align length |
64 |
Score (bit) |
53.9 |
E-value |
6.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SAG8 |
Definition |
tr|A9SAG8|A9SAG8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
133 |
Score (bit) |
215.0 |
E-value |
2.0e-54 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912508|Adiantum capillus-veneris mRNA, clone: YMU001_000019_C07. (601 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SAG8|A9SAG8_PHYPA Predicted protein OS=Physcomitrella paten... 215 2e-54 tr|A5BMW9|A5BMW9_VITVI Putative uncharacterized protein (Chromos... 191 2e-47 tr|A9S4L9|A9S4L9_PHYPA Predicted protein OS=Physcomitrella paten... 187 3e-46 tr|A2Q4Q8|A2Q4Q8_MEDTR Zinc finger, RING-type OS=Medicago trunca... 187 5e-46 tr|B6TCP4|B6TCP4_MAIZE RNA-binding protein OS=Zea mays PE=2 SV=1 186 1e-45 tr|B8B5K3|B8B5K3_ORYSI Putative uncharacterized protein OS=Oryza... 185 2e-45 tr|Q7EYM0|Q7EYM0_ORYSJ Os07g0661600 protein OS=Oryza sativa subs... 184 3e-45 tr|A9T3C1|A9T3C1_PHYPA Predicted protein OS=Physcomitrella paten... 182 1e-44 tr|A3BN36|A3BN36_ORYSJ Putative uncharacterized protein OS=Oryza... 182 1e-44 tr|Q0J8Z1|Q0J8Z1_ORYSJ Os04g0679800 protein OS=Oryza sativa subs... 176 7e-43 tr|B6STH0|B6STH0_MAIZE RNA-binding protein OS=Zea mays PE=2 SV=1 176 1e-42 tr|Q259E4|Q259E4_ORYSA H0801D08.18 protein (B0213E10.1 protein) ... 174 4e-42 tr|A2XZ09|A2XZ09_ORYSI Putative uncharacterized protein OS=Oryza... 174 4e-42 tr|A2Z912|A2Z912_ORYSI Putative uncharacterized protein OS=Oryza... 174 5e-42 tr|Q8LNG7|Q8LNG7_ORYSJ Putative uncharacterized protein OSJNBa00... 173 6e-42 tr|A3C667|A3C667_ORYSJ Putative uncharacterized protein OS=Oryza... 173 6e-42 tr|Q8L8R1|Q8L8R1_ARATH RNA-binding protein-like protein OS=Arabi... 162 2e-38 tr|Q9SD57|Q9SD57_ARATH RNA binding-like protein (At3g47160) OS=A... 161 2e-38 tr|A7PP41|A7PP41_VITVI Chromosome chr8 scaffold_23, whole genome... 160 5e-38 tr|A7NYG5|A7NYG5_VITVI Chromosome chr6 scaffold_3, whole genome ... 158 2e-37 tr|A5BX88|A5BX88_VITVI Putative uncharacterized protein OS=Vitis... 158 2e-37 tr|Q9M022|Q9M022_ARATH Putative uncharacterized protein F7A7_40 ... 157 4e-37 tr|A9NSU7|A9NSU7_PICSI Putative uncharacterized protein OS=Picea... 154 3e-36 tr|Q9LUY0|Q9LUY0_ARATH Similarity to RNA binding-like protein OS... 150 5e-35 tr|Q8L8N5|Q8L8N5_ARATH RNA-binding protein-like protein (Putativ... 150 5e-35 tr|Q2V2X3|Q2V2X3_ARATH Uncharacterized protein At5g58787.2 OS=Ar... 150 5e-35 tr|B7FKJ7|B7FKJ7_MEDTR Putative uncharacterized protein OS=Medic... 150 5e-35 tr|Q9LLM2|Q9LLM2_MEDTR MTD2 OS=Medicago truncatula PE=2 SV=1 148 2e-34 tr|B6U862|B6U862_MAIZE RNA-binding protein OS=Zea mays PE=2 SV=1 137 4e-31 tr|Q6YXI9|Q6YXI9_ORYSJ Zinc finger (C3HC4-type RING finger) prot... 137 5e-31
>tr|A9SAG8|A9SAG8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_76735 PE=4 SV=1 Length = 244
Score = 215 bits (547), Expect = 2e-54 Identities = 95/133 (71%), Positives = 118/133 (88%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 EME++KQKA ERYKK+ ++ + + +LDLE EQECGICME NTK+ LPDCNHAMCLKC Sbjct: 112 EMEDMKQKAVCQERYKKKVDEERGLMSELDLEREQECGICMETNTKIALPDCNHAMCLKC 171
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 +R+WHARSQSCPFCRDSLKRV+S+DLWIFT+S E+QD V++ +D+L+RLF+YIDKLPLLV Sbjct: 172 YREWHARSQSCPFCRDSLKRVDSRDLWIFTDSGEIQDMVSIARDNLQRLFMYIDKLPLLV 231
Query: 361 SESVFAVYDAHLK 399 SES+FA+YDAH K Sbjct: 232 SESIFAIYDAHTK 244
>tr|A5BMW9|A5BMW9_VITVI Putative uncharacterized protein (Chromosome undetermined scaffold_252, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00010263001 PE=4 SV=1 Length = 242
Score = 191 bits (486), Expect = 2e-47 Identities = 81/133 (60%), Positives = 113/133 (84%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 + E+ KQKA MERY++R ++ + D+D+E E+ECGICME N+K+VLP+CNHAMCLKC Sbjct: 110 DTEDKKQKAVCMERYRRRDDEEHKQYSDVDIEREEECGICMEMNSKIVLPNCNHAMCLKC 169
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 +R+W +RSQSCPFCRDSLKRVNS DLW+FT+S ++ D VT+T+++L+RLF+YIDKLPL++ Sbjct: 170 YREWRSRSQSCPFCRDSLKRVNSGDLWVFTDSRDIIDMVTVTRENLRRLFMYIDKLPLII 229
Query: 361 SESVFAVYDAHLK 399 +S+F YD+HL+ Sbjct: 230 PDSLFDQYDSHLR 242
>tr|A9S4L9|A9S4L9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_181236 PE=4 SV=1 Length = 246
Score = 187 bits (476), Expect = 3e-46 Identities = 86/135 (63%), Positives = 108/135 (80%), Gaps = 3/135 (2%) Frame = +1
Query: 4 MEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKCF 183 +E+LKQKA ERY+KR E+ + + D E E ECGICME N K+ LPDCNH MC+ C+ Sbjct: 113 VEDLKQKAKVQERYRKRDEECSH-MSEFDFEREMECGICMERNPKIALPDCNHVMCITCY 171
Query: 184 RDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLVS 363 RDWH RSQSCP+CRDSL+RVNS DLWIFT+S +++D +T+D+L+RLF+YIDKLPLL+S Sbjct: 172 RDWHGRSQSCPYCRDSLRRVNSCDLWIFTDSADIEDVDKITRDNLQRLFLYIDKLPLLIS 231
Query: 364 ESVFAVYD---AHLK 399 ESVFA+YD AHLK Sbjct: 232 ESVFALYDAYEAHLK 246
>tr|A2Q4Q8|A2Q4Q8_MEDTR Zinc finger, RING-type OS=Medicago truncatula GN=MtrDRAFT_AC157507g18v2 PE=4 SV=1 Length = 251
Score = 187 bits (474), Expect = 5e-46 Identities = 80/133 (60%), Positives = 108/133 (81%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 + E+ KQK MERY++R ++ + D+D E E+ECGICME N+K+VLP+CNH MCLKC Sbjct: 119 DAEDKKQKVVCMERYRRREDEEHKQFSDIDFEREEECGICMEMNSKIVLPNCNHVMCLKC 178
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 + +W ARSQSCPFCRDSLKRVNS DLWIFT+S ++ D T+T+++L+RLF+YIDKLPL++ Sbjct: 179 YHEWRARSQSCPFCRDSLKRVNSGDLWIFTDSRDIVDMETVTRENLRRLFMYIDKLPLII 238
Query: 361 SESVFAVYDAHLK 399 ES+F YD+HL+ Sbjct: 239 PESLFDPYDSHLR 251
>tr|B6TCP4|B6TCP4_MAIZE RNA-binding protein OS=Zea mays PE=2 SV=1 Length = 242
Score = 186 bits (471), Expect = 1e-45 Identities = 82/133 (61%), Positives = 109/133 (81%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 E+E+ KQKA +ERY++R ED K V ++D E+ECGICME N KVVLP C+HAMC+KC Sbjct: 110 EVEDRKQKAICLERYRRRDEDPKTVVSEIDDNIEEECGICMEINVKVVLPTCSHAMCIKC 169
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 +R+W +RSQSCPFCRDSLKRVNS DLWI+T+S ++ D T+ +++L+RLF+YIDKLP ++ Sbjct: 170 YREWRSRSQSCPFCRDSLKRVNSADLWIYTDSKDIVDMATVRRENLRRLFMYIDKLPTVI 229
Query: 361 SESVFAVYDAHLK 399 ESVF VYD+H+K Sbjct: 230 PESVFDVYDSHVK 242
>tr|B8B5K3|B8B5K3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27211 PE=4 SV=1 Length = 262
Score = 185 bits (469), Expect = 2e-45 Identities = 81/133 (60%), Positives = 109/133 (81%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 E+E+ KQKA +ERY++R ED K + ++D E+ECGICME N KVVLP C+HAMC+KC Sbjct: 130 EVEDKKQKAICIERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKC 189
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 +RDW +RSQSCPFCRDSLKRVNS DLWI+T++ ++ D T+ K++L+RLF+YIDKLP ++ Sbjct: 190 YRDWRSRSQSCPFCRDSLKRVNSADLWIYTDNRDIVDMATVRKENLRRLFMYIDKLPTVI 249
Query: 361 SESVFAVYDAHLK 399 E+VF VYD+H+K Sbjct: 250 PETVFDVYDSHVK 262
>tr|Q7EYM0|Q7EYM0_ORYSJ Os07g0661600 protein OS=Oryza sativa subsp. japonica GN=P0453E03.108-1 PE=2 SV=1 Length = 242
Score = 184 bits (468), Expect = 3e-45 Identities = 81/133 (60%), Positives = 109/133 (81%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 E+E+ KQKA +ERY++R ED K + ++D E+ECGICME N KVVLP C+HAMC+KC Sbjct: 110 EVEDKKQKAICIERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKC 169
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 +RDW +RSQSCPFCRDSLKRVNS DLWI+T++ ++ D T+ K++L+RLF+YIDKLP ++ Sbjct: 170 YRDWRSRSQSCPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVI 229
Query: 361 SESVFAVYDAHLK 399 E+VF VYD+H+K Sbjct: 230 PETVFDVYDSHVK 242
>tr|A9T3C1|A9T3C1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_191235 PE=4 SV=1 Length = 246
Score = 182 bits (462), Expect = 1e-44 Identities = 85/135 (62%), Positives = 107/135 (79%), Gaps = 3/135 (2%) Frame = +1
Query: 4 MEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKCF 183 +E+LKQKA ERY+KR E+ + + D+E E ECGICME N K+ LPDCNH MCL C+ Sbjct: 113 VEDLKQKAKVHERYRKRDEECSH-MSEFDVEREIECGICMERNPKIALPDCNHVMCLSCY 171
Query: 184 RDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLVS 363 RDW RSQSCP+CRDSL+RVNS DLWIFT+S +++D +T+D+L+RLF+YID LPLL+S Sbjct: 172 RDWRGRSQSCPYCRDSLRRVNSCDLWIFTDSADIEDVDKITRDNLQRLFMYIDNLPLLIS 231
Query: 364 ESVFAVYDA---HLK 399 ESVFA+YDA HLK Sbjct: 232 ESVFALYDAYETHLK 246
>tr|A3BN36|A3BN36_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024458 PE=4 SV=1 Length = 306
Score = 182 bits (462), Expect = 1e-44 Identities = 80/131 (61%), Positives = 107/131 (81%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPEDNKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLKC 180 E+E+ KQKA +ERY++R ED K + ++D E+ECGICME N KVVLP C+HAMC+KC Sbjct: 130 EVEDKKQKAICIERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVVLPTCSHAMCIKC 189
Query: 181 FRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLLV 360 +RDW +RSQSCPFCRDSLKRVNS DLWI+T++ ++ D T+ K++L+RLF+YIDKLP ++ Sbjct: 190 YRDWRSRSQSCPFCRDSLKRVNSADLWIYTDNRDIVDIATVRKENLRRLFMYIDKLPTVI 249
Query: 361 SESVFAVYDAH 393 E+VF VYD+H Sbjct: 250 PETVFDVYDSH 260
>tr|Q0J8Z1|Q0J8Z1_ORYSJ Os04g0679800 protein OS=Oryza sativa subsp. japonica GN=Os04g0679800 PE=4 SV=1 Length = 248
Score = 176 bits (447), Expect = 7e-43 Identities = 76/134 (56%), Positives = 109/134 (81%), Gaps = 1/134 (0%) Frame = +1
Query: 1 EMEELKQKACFMERYKKRPED-NKEDVPDLDLEWEQECGICMENNTKVVLPDCNHAMCLK 177 ++++ +QKA ERY++R ED +K V ++D+E E+ECGICME N KVVLP+C+HAMC+K Sbjct: 115 DVDDRRQKAICTERYRRRDEDESKRHVSEIDVEREEECGICMEMNNKVVLPNCSHAMCMK 174
Query: 178 CFRDWHARSQSCPFCRDSLKRVNSKDLWIFTESCEVQDSVTLTKDSLKRLFVYIDKLPLL 357 C+R W +RSQSCPFCRDSLKRVNS DLW+ T+ +V D T+T+++L+RLF+YI+KLPL+ Sbjct: 175 CYRQWRSRSQSCPFCRDSLKRVNSGDLWMLTDDRDVIDMATITRENLRRLFMYIEKLPLV 234
Query: 358 VSESVFAVYDAHLK 399 +++F YD+H+K Sbjct: 235 APDNIFYAYDSHVK 248
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