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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912522
Clone id YMU001_000019_F07
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000019_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTGTTCCAAAATATTAAAAAATCGGCGGAAGCGGAACCTCTACCACAAACTGTGA
TCGTCAAGTTCATACATAGAACAACAAAAATGAATGCCCGCAGAGCAGCATCGTGCCAAA
GAGATCGCTGACGGAGTAATGGAGCTTGTAACCAGTTCGAGAAAATGATTGATGTAAAGG
GCTGGGCTAGGCTAGGCAGGCGACAACCCCACCCCTTGCAAAAGGCCCTGCCAGTCACGA
AGGTCTTCAGAATGGTGGTTCCATTTTGTATCACCTCACATGGCCATGCTGCATGCAGAT
CCCCCCAAAAGAATTAATTACGAGATGCAAGGCTTTACTGCTATCACCGCTATCTTAAGG
CTCGAACTGATGTGATGAGACCGGAGACACTCTCTTGCTCGATCCTGCGAGCCTGGTTTG
AGATGCCTTCTTCCCTTTCTTTTCATGTGAATGACCCTTCTGATGAGCTTTGGCCGTAAT
ACCCACATTCACTGGGAAGGTCCTATTCTCCATAACCCCAGTCAACCATGTTGAGTCTC
■■Homology search results ■■ -
sp_hit_id Q8MTP3
Definition sp|Q8MTP3|PTP3_ENCCU Polar tube protein 3 OS=Encephalitozoon cuniculi
Align length 68
Score (bit) 29.6
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912522|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_F07.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8MTP3|PTP3_ENCCU Polar tube protein 3 OS=Encephalitozoon cun...    30   9.8  
sp|Q5U1W2|PRR13_RAT Proline-rich protein 13 OS=Rattus norvegicus...    30   9.8  
sp|Q9CQJ5|PRR13_MOUSE Proline-rich protein 13 OS=Mus musculus GN...    30   9.8  

>sp|Q8MTP3|PTP3_ENCCU Polar tube protein 3 OS=Encephalitozoon
           cuniculi GN=PTP3 PE=2 SV=1
          Length = 1256

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = -3

Query: 489 NVGITAKAHQKGHSHEKKGKKASQTRLAGSSKRVSPVSSHQFEP*DSGDSSKALHLVINS 310
           ++G  + +H   H H K+GK AS       S R + V        D        H V  S
Sbjct: 16  DLGSRSSSHAVHHHHSKEGKNASGMDYGNRSTRNARVKVRLHNHNDDSQDGHHHHKVHRS 75

Query: 309 FGGICMQH 286
            GG    H
Sbjct: 76  HGGSIKPH 83


>sp|Q5U1W2|PRR13_RAT Proline-rich protein 13 OS=Rattus norvegicus
           GN=Prr13 PE=2 SV=1
          Length = 139

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 KAHQKGHSHEKKGKKASQTRLAGSS 397
           KAH+K H H K GK +S +  + SS
Sbjct: 110 KAHKKSHKHHKHGKHSSSSSSSSSS 134


>sp|Q9CQJ5|PRR13_MOUSE Proline-rich protein 13 OS=Mus musculus
           GN=Prr13 PE=2 SV=1
          Length = 137

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 KAHQKGHSHEKKGKKASQTRLAGSS 397
           KAH+K H H K GK +S +  + SS
Sbjct: 110 KAHKKSHKHHKHGKHSSSSSSSSSS 134
tr_hit_id Q00VV3
Definition tr|Q00VV3|Q00VV3_OSTTA Chromosome 14 contig 1, DNA sequence OS=Ostreococcus tauri
Align length 52
Score (bit) 35.0
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912522|Adiantum capillus-veneris mRNA, clone:
YMU001_000019_F07.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q00VV3|Q00VV3_OSTTA Chromosome 14 contig 1, DNA sequence OS=O...    35   2.5  
tr|A3USP8|A3USP8_VIBSP Putative urea transporter OS=Vibrio splen...    33   7.3  
tr|A7VLY2|A7VLY2_9VIRU Putative uncharacterized protein OS=Torqu...    33   9.5  

>tr|Q00VV3|Q00VV3_OSTTA Chromosome 14 contig 1, DNA sequence
           OS=Ostreococcus tauri GN=Ot14g02590 PE=4 SV=1
          Length = 149

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +3

Query: 48  PQTVIVKFIHRTTKMNARRAASCQRDR*RSNGACNQFEKMIDVKGWARLGRR 203
           P T   +   RTT+MNARR+ S  RDR ++ GA   F KM      + L RR
Sbjct: 82  PSTPFSRAPPRTTRMNARRSTS-SRDRAKARGASACFRKMSTTTSTSALHRR 132


>tr|A3USP8|A3USP8_VIBSP Putative urea transporter OS=Vibrio
           splendidus 12B01 GN=V12B01_11210 PE=4 SV=1
          Length = 322

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 251 SEDLRDWQGLLQGVGLSPA*PSPALYINHFLELVTSSITPSAISL-ARCCSAGIHFCCSM 75
           ++D++ +QGLL G+G     PS    +   L +   S+  + ++L    CS  + FCC M
Sbjct: 4   NKDIQPFQGLLNGIGQVYFTPSVMTSLLLLLAISIESLALAFLTLLGASCSYALAFCCYM 63

Query: 74  Y 72
           Y
Sbjct: 64  Y 64


>tr|A7VLY2|A7VLY2_9VIRU Putative uncharacterized protein OS=Torque
           teno midi virus PE=4 SV=1
          Length = 278

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 489 NVGITAKAHQKGHSHEKKGKKASQTRLAGSSKRVSPVSSHQFEP*DSGDSSKA 331
           N+    K  QK +   +K KK+S+   + S+K+VSP  SH+ +   S  SS +
Sbjct: 203 NLSRKRKRQQKSYHTHQKRKKSSRNVSSHSTKKVSPKKSHKHKTCKSSSSSSS 255