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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912526
Clone id YMU001_000020_A01
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGGAGGAGGTTGAGCTGGATTGTGTAGTTAGACTTGCTTGCACCGGGGGATATATATCG
GAAGATTTTCTTTCTCAAGTGGATGGTGTTATTGAAAGCCATAAAGCTGTTTCTTCAACA
AAAATTACTTCCAGGATAGAGGATATTTTCCTTGAACCTTCATTGAATGGTAAAAACGGG
GATCCACACCATGCTATTCCAGCAACGATGGGTAGTCAAGATAGCACAAAACGAGACAAT
GTACTTTTTGCAACTACTCATAATGGATCCCCTTCTAGAGTCGTCGTTGATGAAGAACAC
CATACAACACCCAGAGATGCTCTACTGACATCTTTGAGCAAGGAGGATTCTCTGACCAAC
AACAAGGCAGATTGTCATGGAGTGGCAAACCGAAATGGAAGTTCTATAGAAAAGATGAAC
GTTTGTGAACCCCATTTGAATGCACAAGGGGCTGCTATTCAGATGCAGTTTCAAACTTTG
GACAAGGAAAATAGTATTGAAGGAGCACCTCAAGTNGTTTGTGAAGAGAAGTCTCATGCT
AAGGAGGCACGTTC
■■Homology search results ■■ -
sp_hit_id Q8NHP7
Definition sp|Q8NHP7|EXDL1_HUMAN Exonuclease 3'-5' domain-like-containing protein 1 OS=Homo sapiens
Align length 82
Score (bit) 38.5
E-value 0.022
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912526|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A01.
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NHP7|EXDL1_HUMAN Exonuclease 3'-5' domain-like-containing p...    39   0.022
sp|Q03164|HRX_HUMAN Histone-lysine N-methyltransferase HRX OS=Ho...    33   0.93 
sp|A0JM08|K0284_XENTR Protein KIAA0284 homolog OS=Xenopus tropic...    32   1.6  
sp|Q29A33|ATX2_DROPS Ataxin-2 homolog OS=Drosophila pseudoobscur...    30   6.0  

>sp|Q8NHP7|EXDL1_HUMAN Exonuclease 3'-5' domain-like-containing
           protein 1 OS=Homo sapiens GN=EXDL1 PE=2 SV=3
          Length = 514

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 142 DIFLEPSLNGKNGDPHHAIPATMGSQDSTKRDNVLFATTHNGSPSRVVVDEEHHTTPRDA 321
           ++  E SLN +  +P H +P T   + S    N L  T   GS  + +  +EH  TP+  
Sbjct: 378 NLLKEESLNKQATNPQH-LPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHE 436

Query: 322 LLTSLS-KEDS----LTNNKAD 372
              SLS KE++    +  NK D
Sbjct: 437 FQASLSLKEETEQLLMVENKED 458


>sp|Q03164|HRX_HUMAN Histone-lysine N-methyltransferase HRX OS=Homo
            sapiens GN=MLL PE=1 SV=5
          Length = 3969

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 32/137 (23%)
 Frame = +1

Query: 70   LSQVDGVIESHKAVSSTKITSRIEDIFLEPSLNGKN--------------GDPHHAIPAT 207
            +SQ+DGV +  ++ +S   T+R       P  NGK               G+  H   ++
Sbjct: 2714 ISQLDGVDDGTESDTSVTATTRKSSQI--PKRNGKENGTENLKIDRPEDAGEKEHVTKSS 2771

Query: 208  MGSQDSTKRDNV-------------LFATTHNGSPSRVVVDEEHHTTPRDALL-----TS 333
            +G ++  K DN              L A   +   SR V    H +TP D  L     T 
Sbjct: 2772 VGHKNEPKMDNCHSVSRVKTQGQDSLEAQLSSLESSRRV----HTSTPSDKNLLDTYNTE 2827

Query: 334  LSKEDSLTNNKADCHGV 384
            L K DS  NN  DC  +
Sbjct: 2828 LLKSDSDNNNSDDCGNI 2844


>sp|A0JM08|K0284_XENTR Protein KIAA0284 homolog OS=Xenopus tropicalis
            PE=2 SV=1
          Length = 1628

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +1

Query: 73   SQVDGVIESHKAVSSTKITSRIEDIFLEPSLNGKNGDPHHAIPATMGSQDSTKRDNVLFA 252
            SQ + ++   K  SS+  TS I++ + +PS   +  +    +PA  G+++ TKR  +  +
Sbjct: 1017 SQKNRIVSLQKEKSSS--TSSIQEQYCQPSARERLSEKRRTVPADAGTRNVTKRLGMTRS 1074

Query: 253  TTHNGS 270
            T   GS
Sbjct: 1075 TGARGS 1080


>sp|Q29A33|ATX2_DROPS Ataxin-2 homolog OS=Drosophila pseudoobscura
           pseudoobscura GN=Atx2 PE=3 SV=2
          Length = 1121

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 2/146 (1%)
 Frame = +1

Query: 55  ISEDFLSQ--VDGVIESHKAVSSTKITSRIEDIFLEPSLNGKNGDPHHAIPATMGSQDST 228
           +++DF SQ    G  ++ +A+S     +R+++  LEP  +G NGD    +       D+ 
Sbjct: 141 VAKDFDSQYATAGAFKTDEAISDKCNGARLDEKELEPWDSGANGDIDIELDGAANGWDA- 199

Query: 229 KRDNVLFATTHNGSPSRVVVDEEHHTTPRDALLTSLSKEDSLTNNKADCHGVANRNGSSI 408
              N +F    N        D+   T         L K DSL   +A+    A +  + I
Sbjct: 200 ---NEMFRKNENTFGVTSTFDDSLAT-----YTIPLDKGDSLEFKEAEAK--AEKLAAEI 249

Query: 409 EKMNVCEPHLNAQGAAIQMQFQTLDK 486
           E    C   L+ +    +  F  +++
Sbjct: 250 ENNPTCRDRLDLENGDEEALFAAVER 275
tr_hit_id B7Z839
Definition tr|B7Z839|B7Z839_HUMAN cDNA FLJ55584 OS=Homo sapiens
Align length 82
Score (bit) 38.5
E-value 0.24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912526|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A01.
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7Z839|B7Z839_HUMAN cDNA FLJ55584 OS=Homo sapiens PE=2 SV=1         39   0.24 
tr|B0XG73|B0XG73_CULQU Enoki mushroom OS=Culex quinquefasciatus ...    37   0.92 
tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula GN=Mtr...    36   1.2  
tr|B8B1U9|B8B1U9_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.2  
tr|A4IID0|A4IID0_XENTR Mitf protein OS=Xenopus tropicalis GN=mit...    36   1.6  
tr|A7RGT3|A7RGT3_NEMVE Predicted protein OS=Nematostella vectens...    36   1.6  
tr|Q76DN3|Q76DN3_XENLA Microphthalmia-associated transcription f...    35   2.0  
tr|Q76DN2|Q76DN2_XENLA Micophthalmia-associated transcription fa...    35   2.0  
tr|B2GTX5|B2GTX5_XENLA Putative uncharacterized protein (Fragmen...    35   2.0  
tr|B8HEY2|B8HEY2_9MICC Mannose-6-phosphate isomerase, class I OS...    35   2.0  
tr|Q76DN5|Q76DN5_XENLA Micophthalmia-associated transcription fa...    35   2.7  
tr|Q76DN4|Q76DN4_XENLA Micophthalmia-associated transcription fa...    35   2.7  
tr|A2T6N2|A2T6N2_MACNE MLL (Fragment) OS=Macaca nemestrina GN=ML...    35   2.7  
tr|A2D5Z6|A2D5Z6_LEMCA MLL (Fragment) OS=Lemur catta GN=MLL PE=4...    35   2.7  
tr|A2D5Q6|A2D5Q6_LAGLA MLL (Fragment) OS=Lagothrix lagotricha GN...    35   2.7  
tr|A2D4X3|A2D4X3_ATEGE MLL (Fragment) OS=Ateles geoffroyi GN=MLL...    35   2.7  
tr|O97236|O97236_PLAF7 Putative uncharacterized protein MAL3P2.1...    35   2.7  
tr|B4IKZ0|B4IKZ0_DROSE GM11239 OS=Drosophila sechellia GN=GM1123...    34   4.6  
tr|Q481X2|Q481X2_COLP3 VCBS repeat protein OS=Colwellia psychrer...    34   6.0  
tr|Q9CUK0|Q9CUK0_MOUSE Putative uncharacterized protein (Fragmen...    33   7.8  
tr|Q8VCL4|Q8VCL4_MOUSE Zfp451 protein OS=Mus musculus GN=Zfp451 ...    33   7.8  
tr|Q80TA4|Q80TA4_MOUSE MKIAA1702 protein (Fragment) OS=Mus muscu...    33   7.8  
tr|A1YEZ7|A1YEZ7_9PRIM MLL (Fragment) OS=Gorilla gorilla GN=MLL ...    33   7.8  
tr|A1CJL6|A1CJL6_ASPCL pH signal transduction protein PalI, puta...    33   7.8  

>tr|B7Z839|B7Z839_HUMAN cDNA FLJ55584 OS=Homo sapiens PE=2 SV=1
          Length = 572

 Score = 38.5 bits (88), Expect = 0.24
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 142 DIFLEPSLNGKNGDPHHAIPATMGSQDSTKRDNVLFATTHNGSPSRVVVDEEHHTTPRDA 321
           ++  E SLN +  +P H +P T   + S    N L  T   GS  + +  +EH  TP+  
Sbjct: 436 NLLKEESLNKQATNPQH-LPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHE 494

Query: 322 LLTSLS-KEDS----LTNNKAD 372
              SLS KE++    +  NK D
Sbjct: 495 FQASLSLKEETEQLLMVENKED 516


>tr|B0XG73|B0XG73_CULQU Enoki mushroom OS=Culex quinquefasciatus
            GN=CpipJ_CPIJ018518 PE=4 SV=1
          Length = 2234

 Score = 36.6 bits (83), Expect = 0.92
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
 Frame = +1

Query: 73   SQVDGVIESHKAVSSTKITSRIEDIFLEPSLNGKNGDPHHAIPATMGSQDSTKRDNVLFA 252
            S+V+  + S KA S+ +++S   D  +E   N +  D    +  T  ++  TK+  +L +
Sbjct: 707  SEVENQLSSSKADSTGEVSSGEADDEMEEE-NERTSDKASVLTTT--NEPVTKQATMLVS 763

Query: 253  T--THNG----------SPSRVVVDEEHHTTPRDALLTSLSKEDSLTNNKADCHGVANRN 396
               TH+           SP     DE++ T P D+ + + S  DS+ N   +   V  ++
Sbjct: 764  LGPTHSNEPPALDEPQKSPGECREDEQNETKPIDSEVDAGSATDSVVNQHTN--QVLEKS 821

Query: 397  GSSIEKMNV-------CEPHLNAQGAAIQMQFQTLDKENSIEGAPQVVCEEKS 534
                E+          CE         +  + +  +KE+S+E AP+++ E  S
Sbjct: 822  PEKKEETPEAAVADADCEKKNENSQVQVNAESEEQEKESSLEAAPELIAEGTS 874


>tr|Q2HTJ8|Q2HTJ8_MEDTR (, related) OS=Medicago truncatula
           GN=MtrDRAFT_AC150440g13v2 PE=4 SV=1
          Length = 912

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 26/110 (23%), Positives = 48/110 (43%)
 Frame = +1

Query: 94  ESHKAVSSTKITSRIEDIFLEPSLNGKNGDPHHAIPATMGSQDSTKRDNVLFATTHNGSP 273
           + +  +SS++I   +  I   P  N           + +GS       +++ A +   S 
Sbjct: 483 DDNTGISSSQIPKTLGRILALPEYNF----------SPLGSPGGNLEHHLVTAHSRLSSS 532

Query: 274 SRVVVDEEHHTTPRDALLTSLSKEDSLTNNKADCHGVANRNGSSIEKMNV 423
            + + D E H +P+DA  TS+ + D  T+N A+   V   N  S E + +
Sbjct: 533 DKTLEDNEDHLSPKDA--TSIDQPDKETSNSANQSSVCGENERSNEVLEI 580


>tr|B8B1U9|B8B1U9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24278 PE=4 SV=1
          Length = 656

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 33/121 (27%), Positives = 59/121 (48%)
 Frame = +1

Query: 64  DFLSQVDGVIESHKAVSSTKITSRIEDIFLEPSLNGKNGDPHHAIPATMGSQDSTKRDNV 243
           + LSQ DG++E H+ V S ++  +  D  ++ S   +NG   + I   +    S +R + 
Sbjct: 236 EILSQ-DGLLEEHQDVPSNRLLEKHWDEEMQESYPMENGGREYQIIDALSFDQSYQRKSS 294

Query: 244 LFATTHNGSPSRVVVDEEHHTTPRDALLTSLSKEDSLTNNKADCHGVANRNGSSIEKMNV 423
           + +   NG+P++  + EE     RD  L  LS   S  + K    G +  + SS E+++ 
Sbjct: 295 INSNVWNGNPNK--LSEEMVRCMRDIFL-RLSDSSSEISPK----GSSVNSISSTERLSG 347

Query: 424 C 426
           C
Sbjct: 348 C 348


>tr|A4IID0|A4IID0_XENTR Mitf protein OS=Xenopus tropicalis GN=mitf
           PE=2 SV=1
          Length = 483

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +1

Query: 13  ELDCVVRLACTGGYISEDFLSQVDGVIESHKAVS-STKITSRIEDIFLEPSLNGKNGDPH 189
           +L     L  T G I+  F + +  + +S  A S  TK+ S++ED+F++ +L+ +  DPH
Sbjct: 401 DLSGTTTLDLTDGTIT--FSNNLRNMTDSPTAYSIPTKLGSKLEDMFMDDTLSPRVNDPH 458

Query: 190 HAIPATMGSQDSTKRDNV 243
           H I +   S+ +++R ++
Sbjct: 459 HTI-SPGASRTNSRRSSI 475


>tr|A7RGT3|A7RGT3_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g196935 PE=4 SV=1
          Length = 456

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -2

Query: 367 PCCWSENPPCSKMSVEHLWVLYGVLHQRRL*KGIHYE*LQKVHCLV-LCYLDYPSLLE*H 191
           PCC   +  C   S +H W + G  H       +H E   +V+CL  LCYL  P      
Sbjct: 200 PCCTGLDGSCHMTSPQHCWFVGGKFH-------LHAEHCYQVNCLEHLCYLGNPP----- 247

Query: 190 GVDPRFYHSMKVQGKYPLSWK 128
              P +  + K+   Y   W+
Sbjct: 248 -TTPEYQDTPKLPPSYHQWWR 267


>tr|Q76DN3|Q76DN3_XENLA Microphthalmia-associated transcription
           factor type M OS=Xenopus laevis GN=Mitf-M PE=2 SV=1
          Length = 392

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13  ELDCVVRLACTGGYISEDFLSQVDGVIESHKAVS-STKITSRIEDIFLEPSLNGKNGDPH 189
           +L     L  T G I+  F + +  + +S  A S +TK+ S++EDIF++ +L+ +  DP+
Sbjct: 310 DLSVTTTLDLTDGTIT--FSNNLRNMTDSPTAYSIATKLGSKLEDIFMDDTLSPRVNDPY 367

Query: 190 HAI 198
           H I
Sbjct: 368 HTI 370


>tr|Q76DN2|Q76DN2_XENLA Micophthalmia-associated transcription
           factor type A OS=Xenopus laevis GN=Mitf-A PE=2 SV=1
          Length = 483

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13  ELDCVVRLACTGGYISEDFLSQVDGVIESHKAVS-STKITSRIEDIFLEPSLNGKNGDPH 189
           +L     L  T G I+  F + +  + +S  A S +TK+ S++EDIF++ +L+ +  DP+
Sbjct: 401 DLSVTTTLDLTDGTIT--FSNNLRNMTDSPTAYSIATKLGSKLEDIFMDDTLSPRVNDPY 458

Query: 190 HAI 198
           H I
Sbjct: 459 HTI 461


>tr|B2GTX5|B2GTX5_XENLA Putative uncharacterized protein (Fragment)
           OS=Xenopus laevis PE=2 SV=1
          Length = 478

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 13  ELDCVVRLACTGGYISEDFLSQVDGVIESHKAVS-STKITSRIEDIFLEPSLNGKNGDPH 189
           +L     L  T G I+  F + +  + +S  A S +TK+ S++EDIF++ +L+ +  DP+
Sbjct: 396 DLSVTTTLDLTDGTIT--FSNNLRNMTDSPTAYSIATKLGSKLEDIFMDDTLSPRVNDPY 453

Query: 190 HAI 198
           H I
Sbjct: 454 HTI 456


>tr|B8HEY2|B8HEY2_9MICC Mannose-6-phosphate isomerase, class I
           OS=Arthrobacter chlorophenolicus A6 GN=Achl_1257 PE=4
           SV=1
          Length = 425

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +1

Query: 193 AIPATMGSQDSTKRDNVLFATTHNGSPSRVVVDEEHHTTPRDALLTS 333
           AI A +G  +S   +  L+   H  SPS   V E+  TTP DAL+TS
Sbjct: 18  AIAALLGRPESGAPEAELWIGAHPDSPSTAHVPEDGSTTPLDALITS 64