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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP912530
Clone id YMU001_000020_A05
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAATCAAGTCAGTCAACCATTAGTAAATGCAAGGTCAAACAGGCAGAAAAAAAGATGGT
CTCTATTGACACAACTACAACGAAGAATGTTCAGGATTTTGAGAGATTGCAGCTGTTGAA
AGGGAAGCTAATAAGAAAGCTAAGGAGGAATTGGATATGCTGGGAAAATATAAGGGATAC
ATTGGACGATTTCCCGTATTACTTACACAAAAATACGAGAGATTTGCTGCTAGATTGTGT
TGCAGTTAGAGTGAAGAAGCACAAGTTTTCAAGGTTTGGGGAGAATTTACCAAATACCAG
TCATCTGATTCTCCTTCAAGGACAACCTGGCACAGAGTTGTATCAAGAAGCTCTAGTAAG
GGCAATGGCTCGTATACTTCGGGTATCTCTGTTGGTGGCTGACAGCAGTACTTTGTCTGC
AAAGGATTTGAAGGATGATAGACGTATTGCAGGGTTGCCTCCGGGAGAAAATAATCTGGA
TAATGATGA
■■Homology search results ■■ -
sp_hit_id Q0W644
Definition sp|Q0W644|FAEHP_UNCMA Bifunctional enzyme fae/hps OS=Uncultured methanogenic archaeon RC-I
Align length 51
Score (bit) 31.2
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912530|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A05.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0W644|FAEHP_UNCMA Bifunctional enzyme fae/hps OS=Uncultured ...    31   2.6  
sp|Q86YV5|SG223_HUMAN Tyrosine-protein kinase SgK223 OS=Homo sap...    31   3.5  
sp|P33683|CLPX_AZOVI ATP-dependent Clp protease ATP-binding subu...    30   4.5  
sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog OS...    30   5.9  
sp|Q1QVW2|CLPX_CHRSD ATP-dependent Clp protease ATP-binding subu...    30   7.6  

>sp|Q0W644|FAEHP_UNCMA Bifunctional enzyme fae/hps OS=Uncultured
           methanogenic archaeon RC-I GN=fae-hps PE=3 SV=1
          Length = 396

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 281 ENLPNTSHLILLQGQPGTELYQEALVRAMARILRVSLLVADSSTLSAKDLK 433
           +N+P   HLI+  G P  + Y  +++  +  I + + +VAD  TL   +L+
Sbjct: 192 KNVPKNDHLIIEAGTPLIKRYGLSVISKIREIRKDAFIVADLKTLDTGNLE 242


>sp|Q86YV5|SG223_HUMAN Tyrosine-protein kinase SgK223 OS=Homo
           sapiens GN=SGK223 PE=1 SV=2
          Length = 1406

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 WGEFTKYQSSDSPSRTTWHRVVSRSSSKGNGS 372
           WG  TK   +D  + TTWHR+     S G  S
Sbjct: 654 WGRETKNGPTDHSNSTTWHRLHPTDGSSGQNS 685


>sp|P33683|CLPX_AZOVI ATP-dependent Clp protease ATP-binding subunit
           clpX OS=Azotobacter vinelandii GN=clpX PE=3 SV=1
          Length = 440

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 272 RFGENLPNTSHLILLQGQPGTELYQEALVRAMARILRVSLLVADSSTLS 418
           + GE +      IL+ G  GT   +  LVR +ARIL V   +AD++TL+
Sbjct: 103 QLGEQVELEKSNILMAGPSGTG--KTLLVRTLARILGVPFAMADATTLT 149


>sp|Q10351|PIGS_SCHPO GPI transamidase component PIG-S homolog
           OS=Schizosaccharomyces pombe GN=SPAC1F12.09 PE=2 SV=1
          Length = 554

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 262 QVFKVWGEFTKYQSSDSPSRTTWHRVVSRS 351
           QV +VW +FT++ S+  PSR    R V  S
Sbjct: 208 QVMEVWSKFTRFSSTVEPSRAETKRTVQFS 237


>sp|Q1QVW2|CLPX_CHRSD ATP-dependent Clp protease ATP-binding subunit
           clpX OS=Chromohalobacter salexigens (strain DSM 3043 /
           ATCC BAA-138 / NCIMB 13768) GN=clpX PE=3 SV=1
          Length = 426

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 26/83 (31%), Positives = 41/83 (49%)
 Frame = +2

Query: 170 IRDTLDDFPYYLHKNTRDLLLDCVAVRVKKHKFSRFGENLPNTSHLILLQGQPGTELYQE 349
           IR+TLDD+     +  R L +  V    K+ +     E++      ILL G  G+   + 
Sbjct: 71  IRNTLDDYVIGQDRAKRVLSV-AVYNHYKRLRADVKSEDVELGKSNILLIGPTGSG--KT 127

Query: 350 ALVRAMARILRVSLLVADSSTLS 418
            L   MAR+L V   +AD++TL+
Sbjct: 128 LLAETMARLLNVPFTIADATTLT 150
tr_hit_id Q9LJM0|Q9LJM0_ARATH Gb
Definition tr|Q9LJM0|Q9LJM0_ARATH Gb|AAD50048.1 OS=Arabidopsis thaliana
Align length 105
Score (bit) 93.6
E-value 4.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP912530|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A05.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LJM0|Q9LJM0_ARATH Gb|AAD50048.1 OS=Arabidopsis thaliana PE=...    94   4e-18
tr|Q9SX36|Q9SX36_ARATH F14I3.21 protein (Fragment) OS=Arabidopsi...    93   8e-18
tr|A7P2W5|A7P2W5_VITVI Chromosome chr1 scaffold_5, whole genome ...    84   4e-15
tr|A9RTB5|A9RTB5_PHYPA Predicted protein (Fragment) OS=Physcomit...    77   3e-13
tr|B8B487|B8B487_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A3B9U8|A3B9U8_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A5ATS0|A5ATS0_VITVI Putative uncharacterized protein OS=Vitis...    70   7e-11
tr|B8BLP9|B8BLP9_ORYSI Putative uncharacterized protein OS=Oryza...    69   9e-11
tr|A3CDN2|A3CDN2_ORYSJ Putative uncharacterized protein OS=Oryza...    69   9e-11
tr|A7PHF9|A7PHF9_VITVI Chromosome chr17 scaffold_16, whole genom...    65   2e-09
tr|A7QNG1|A7QNG1_VITVI Chromosome chr2 scaffold_132, whole genom...    62   1e-08
tr|B8B5U6|B8B5U6_ORYSI Putative uncharacterized protein OS=Oryza...    61   2e-08
tr|Q7X989|Q7X989_ORYSJ Os07g0672500 protein OS=Oryza sativa subs...    61   3e-08
tr|A3BNB2|A3BNB2_ORYSJ Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A5ASR5|A5ASR5_VITVI Putative uncharacterized protein OS=Vitis...    60   5e-08
tr|Q10LK8|Q10LK8_ORYSJ AAA-type ATPase family protein, putative,...    60   7e-08
tr|Q0DRZ0|Q0DRZ0_ORYSJ Os03g0344700 protein (Fragment) OS=Oryza ...    60   7e-08
tr|B8APE5|B8APE5_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|A3AHU7|A3AHU7_ORYSJ Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|A7QGD3|A7QGD3_VITVI Chromosome undetermined scaffold_91, whol...    59   1e-07
tr|A7Q0A4|A7Q0A4_VITVI Chromosome chr7 scaffold_42, whole genome...    59   1e-07
tr|A7QGC9|A7QGC9_VITVI Chromosome undetermined scaffold_91, whol...    57   4e-07
tr|Q940D1|Q940D1_ARATH At1g64110/F22C12_22 OS=Arabidopsis thalia...    57   6e-07
tr|Q5NAF6|Q5NAF6_ORYSJ cDNA clone:J033089N14, full insert sequen...    57   6e-07
tr|B8AAY6|B8AAY6_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|B6EUB4|B6EUB4_ARATH Putative uncharacterized protein At1g0289...    57   6e-07
tr|B3H7I9|B3H7I9_ARATH Uncharacterized protein At1g64110.3 OS=Ar...    57   6e-07
tr|B3H4X5|B3H4X5_ARATH Uncharacterized protein At1g02890.1 OS=Ar...    57   6e-07
tr|Q8W4F4|Q8W4F4_ARATH Similar to homeobox protein (Fragment) OS...    56   8e-07
tr|Q0WVV9|Q0WVV9_ARATH Putative uncharacterized protein (Fragmen...    55   1e-06

>tr|Q9LJM0|Q9LJM0_ARATH Gb|AAD50048.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 379

 Score = 93.6 bits (231), Expect = 4e-18
 Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
 Frame = +2

Query: 161 WENIRDTLDDFPYYLHKNTRDLLLDCVAVRVK-KHKFSRFGENLPNTSHLILLQGQPGTE 337
           WE I+ + + FPYY+H +T+D+L++CV   ++ K+  S +G  L ++S  ILLQ  PGTE
Sbjct: 170 WEKIQLSWETFPYYIHDHTKDILVECVTSHIRQKNAASIYGARLDSSSGRILLQSVPGTE 229

Query: 338 LYQEALVRAMARILRVSLLVADSSTLSAKDLKDDRRIAGLPPGEN 472
           LY+E LVRA+AR ++V LLV DSS L+  D  DD        GEN
Sbjct: 230 LYRERLVRALARDVQVPLLVLDSSVLAPYDFADDYNEESESDGEN 274


>tr|Q9SX36|Q9SX36_ARATH F14I3.21 protein (Fragment) OS=Arabidopsis
           thaliana GN=F14I3.21 PE=4 SV=1
          Length = 366

 Score = 92.8 bits (229), Expect = 8e-18
 Identities = 47/94 (50%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = +2

Query: 161 WENIRDTLDDFPYYLHKNTRDLLLDCVAVRVK-KHKFSRFGENLPNTSHLILLQGQPGTE 337
           WE I+ + + FPYY+H++T+D L++CV+  +K K   S++G  L ++S  ILLQ  PGTE
Sbjct: 156 WETIQLSWESFPYYVHEHTKDTLVECVSSHIKQKSMTSKYGARLDSSSGRILLQSVPGTE 215

Query: 338 LYQEALVRAMARILRVSLLVADSSTLSAKDLKDD 439
           LY+E LVRA+AR  +V LLV DSS L+  D  DD
Sbjct: 216 LYRERLVRALARDTQVPLLVLDSSVLAPYDFADD 249


>tr|A7P2W5|A7P2W5_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030212001
           PE=3 SV=1
          Length = 992

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
 Frame = +2

Query: 161 WENIRDTLDDFPYYLHKNTRDLLLDCVAVRVKKHKFS-RFGENLPNTSHLILLQGQPGTE 337
           WE I  + + FPY++  +T++LL++C A  +K  KF+  +G  L ++S  ILLQ  PGTE
Sbjct: 162 WEKITVSWETFPYHIPDHTKNLLVECAASHLKHKKFTVSYGARLTSSSGRILLQSVPGTE 221

Query: 338 LYQEALVRAMARILRVSLLVADSSTLSAKDLKD 436
           LY+E LVRA+AR L+V LLV DSS L++ D  +
Sbjct: 222 LYRERLVRALARDLQVPLLVLDSSILASYDFAE 254


>tr|A9RTB5|A9RTB5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_70281 PE=4 SV=1
          Length = 543

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 37/83 (44%), Positives = 62/83 (74%)
 Frame = +2

Query: 161 WENIRDTLDDFPYYLHKNTRDLLLDCVAVRVKKHKFSRFGENLPNTSHLILLQGQPGTEL 340
           W++I  +LD+FPY+L+++T+ +LLD + V +KK +FS++   L + S  ILL G  G+E+
Sbjct: 89  WKDINISLDEFPYFLNESTKTVLLDSMYVFLKKPEFSKYTNELGSVSPRILLTGPLGSEI 148

Query: 341 YQEALVRAMARILRVSLLVADSS 409
           YQE LV+ +A+ L+V++LV DS+
Sbjct: 149 YQEKLVKGLAQHLQVNILVFDST 171


>tr|B8B487|B8B487_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22232 PE=4 SV=1
          Length = 951

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +2

Query: 161 WENIRDTLDDFPYYLHKNTRDLLLDCVAVRVK-KHKFSRFGENLPNTSHLILLQGQPGTE 337
           WE    +   FPYY+ ++ R LL DCVA  ++ K     +G  L ++   ILLQ   GTE
Sbjct: 129 WEKATLSWRSFPYYVDEDARQLLSDCVAAHLRHKDVALEYGSRLQSSGGRILLQSLSGTE 188

Query: 338 LYQEALVRAMARILRVSLLVADSSTLSAKDLKDD 439
           LY+E LV+A+A  LRV LLV DSS L+  D  +D
Sbjct: 189 LYRERLVKALAHELRVPLLVLDSSVLAPYDFGED 222


>tr|A3B9U8|A3B9U8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019820 PE=3 SV=1
          Length = 937

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +2

Query: 161 WENIRDTLDDFPYYLHKNTRDLLLDCVAVRVK-KHKFSRFGENLPNTSHLILLQGQPGTE 337
           WE    +   FPYY+ ++ R LL DCVA  ++ K     +G  L ++   ILLQ   GTE
Sbjct: 97  WEKATLSWRSFPYYVDEDARQLLSDCVAAHLRHKDVALEYGSRLQSSGGRILLQSLSGTE 156

Query: 338 LYQEALVRAMARILRVSLLVADSSTLSAKDLKDD 439
           LY+E LV+A+A  LRV LLV DSS L+  D  +D
Sbjct: 157 LYRERLVKALAHELRVPLLVLDSSVLAPYDFGED 190


>tr|A5ATS0|A5ATS0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041558 PE=4 SV=1
          Length = 594

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +2

Query: 212 NTRDLLLDCVAVRVKKHKFS-RFGENLPNTSHLILLQGQPGTELYQEALVRAMARILRVS 388
           +T++LL++C A  +K  KF+  +G  L ++S  ILLQ  PGTELY+E LVRA+AR L+V 
Sbjct: 170 HTKNLLVECAASHLKHKKFTVSYGARLTSSSGRILLQSVPGTELYRERLVRALARDLQVP 229

Query: 389 LLVADSSTLSAKDLKD 436
           LLV DSS L++ D  +
Sbjct: 230 LLVLDSSILASYDFAE 245


>tr|B8BLP9|B8BLP9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36923 PE=4 SV=1
          Length = 1191

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 33/86 (38%), Positives = 52/86 (60%)
 Frame = +2

Query: 179 TLDDFPYYLHKNTRDLLLDCVAVRVKKHKFSRFGENLPNTSHLILLQGQPGTELYQEALV 358
           T ++FPYYL  NT+++LL C  + ++K +F +    + + +  ILL G  G+E+YQE L+
Sbjct: 379 TFENFPYYLSDNTKNVLLSCAFIHLEKKEFIKQFSEISSINQRILLSGPAGSEIYQETLI 438

Query: 359 RAMARILRVSLLVADSSTLSAKDLKD 436
           +A+A+     LLV DS  L     KD
Sbjct: 439 KALAKHFGARLLVVDSLLLPGAPSKD 464


>tr|A3CDN2|A3CDN2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033404 PE=3 SV=1
          Length = 1220

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 33/86 (38%), Positives = 52/86 (60%)
 Frame = +2

Query: 179 TLDDFPYYLHKNTRDLLLDCVAVRVKKHKFSRFGENLPNTSHLILLQGQPGTELYQEALV 358
           T ++FPYYL  NT+++LL C  + ++K +F +    + + +  ILL G  G+E+YQE L+
Sbjct: 394 TFENFPYYLSDNTKNVLLSCAFIHLEKKEFIKQFSEISSINQRILLSGPAGSEIYQETLI 453

Query: 359 RAMARILRVSLLVADSSTLSAKDLKD 436
           +A+A+     LLV DS  L     KD
Sbjct: 454 KALAKHFGARLLVVDSLLLPGAPSKD 479


>tr|A7PHF9|A7PHF9_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017926001
           PE=3 SV=1
          Length = 1188

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 7/98 (7%)
 Frame = +2

Query: 164 ENIRDTLDDFPYYLHKNTRDLLLDCVAVRVKKHKFSRFGENLPNTSHLILLQGQPGTELY 343
           + I+ + DDFPYYL +NT+++L+    + +K  + ++F   L   +  ILL G  G+E+Y
Sbjct: 371 KEIQVSFDDFPYYLSENTKNVLIAASFIHLKHREHAKFTSELTTVNPRILLSGPAGSEIY 430

Query: 344 QEALVRAMARILRVSLLVADSST----LSAKD---LKD 436
           QE L +A+A      LL+ DS +    LS+K+   LKD
Sbjct: 431 QEMLAKALANYFGAKLLIFDSHSFLGGLSSKEAELLKD 468