BP912532 |
Clone id |
YMU001_000020_A07 |
Library |
YMU01 |
Length |
463 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000020_A07. |
Accession |
BP912532 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCTTGTCTAAAATGGGATGGAAAAAAGGTGAAGGCCTAGGGAGTGGGAGGGGTGGACGT GCAGATCCCGTGGAGGCTGGGGCTGTGAAGACAAATAACTTGGGTGTGGGAGCCCAGCAG CCCGGTGAAGTCAACCCCGATGATGATATATACGAGCAGTACAAGAAACGCATGATGCTT GGTTATCGCTATAGGCCAAACCCTCTTAATAACCCAAGAAAGGCCTATTATTGATCGCTG ACTTGTAATTCATGGTTTAAGCTCGTTGGTTCTGCTGCATATATTCGACATTATACTGCG GCTTCAAAGGTTTTACGACGAGGTGGTGGTGTTCAGTAACCATACCACTGTATGAACGGA ATGCACTGATAAGTGCTTTGCATGATGTAAATTTTCCTACACAGTGAGCGCCTGTCCAAC CGTACTCTGGCTGGGTCATTTCCCTCATTGCATTTTATAATCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q94C11 |
Definition |
sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidopsis thaliana |
Align length |
77 |
Score (bit) |
108.0 |
E-value |
1.0e-23 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3TLK2 |
Definition |
tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis sativus |
Align length |
77 |
Score (bit) |
115.0 |
E-value |
8.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP912532|Adiantum capillus-veneris mRNA, clone: YMU001_000020_A07. (463 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis s... 115 8e-25 tr|A9RCU3|A9RCU3_PHYPA Predicted protein (Fragment) OS=Physcomit... 113 5e-24 tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole geno... 112 1e-23 tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis... 112 1e-23 tr|Q6ENK8|Q6ENK8_ORYSJ Os09g0281600 protein OS=Oryza sativa subs... 105 8e-22 tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza... 105 8e-22 tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza... 105 8e-22 tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2... 105 1e-21 tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2... 105 1e-21 tr|B6P8K7|B6P8K7_BRAFL Putative uncharacterized protein OS=Branc... 73 8e-12 tr|A6ML01|A6ML01_CALJA Splicing factor 4-like protein (Fragment)... 72 2e-11 tr|A4FV64|A4FV64_BOVIN SF4 protein OS=Bos taurus GN=SF4 PE=2 SV=1 72 2e-11 tr|B3KS44|B3KS44_HUMAN cDNA FLJ35426 fis, clone SMINT2001683, hi... 72 2e-11 tr|A8K7S0|A8K7S0_HUMAN cDNA FLJ75478, highly similar to Homo sap... 72 2e-11 tr|A5PLN4|A5PLN4_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 ... 72 2e-11 tr|Q28E21|Q28E21_XENTR Novel protein containing Surp module and ... 71 2e-11 tr|B1WB15|B1WB15_XENTR Splicing factor 4 OS=Xenopus tropicalis G... 71 2e-11 tr|A8ISC3|A8ISC3_CHLRE Predicted protein OS=Chlamydomonas reinha... 71 3e-11 tr|Q7QBC6|Q7QBC6_ANOGA AGAP003232-PA (Fragment) OS=Anopheles gam... 71 3e-11 tr|Q4RV55|Q4RV55_TETNG Chromosome 15 SCAF14992, whole genome sho... 70 4e-11 tr|Q5XGY4|Q5XGY4_XENLA LOC495256 protein (Fragment) OS=Xenopus l... 70 7e-11 tr|B6M2W2|B6M2W2_BRAFL Putative uncharacterized protein OS=Branc... 69 1e-10 tr|Q9VNC5|Q9VNC5_DROME CG31550, isoform A OS=Drosophila melanoga... 66 1e-09 tr|Q9VNC4|Q9VNC4_DROME CG31550, isoform B OS=Drosophila melanoga... 66 1e-09 tr|Q17P48|Q17P48_AEDAE Putative uncharacterized protein OS=Aedes... 66 1e-09 tr|B4QWW5|B4QWW5_DROSI GD19790 OS=Drosophila simulans GN=GD19790... 66 1e-09 tr|B4PVA8|B4PVA8_DROYA GE25473 OS=Drosophila yakuba GN=GE25473 P... 66 1e-09 tr|B4JHV2|B4JHV2_DROGR GH18599 OS=Drosophila grimshawi GN=GH1859... 66 1e-09 tr|B4I412|B4I412_DROSE GM10812 OS=Drosophila sechellia GN=GM1081... 66 1e-09 tr|B3P2E3|B3P2E3_DROER GG12860 OS=Drosophila erecta GN=GG12860 P... 66 1e-09
>tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis sativus PE=2 SV=1 Length = 446
Score = 115 bits (289), Expect = 8e-25 Identities = 56/77 (72%), Positives = 58/77 (75%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADP+ AG VKTNNLGVGA QPGEV P+DDIYEQYKKRMML Sbjct: 370 LLSKMGWKEGEGLGSSKSGIADPIMAGDVKTNNLGVGAHQPGEVTPEDDIYEQYKKRMML 429
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRKAYY Sbjct: 430 GYRYRPNPLNNPRKAYY 446
>tr|A9RCU3|A9RCU3_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_111812 PE=4 SV=1 Length = 285
Score = 113 bits (282), Expect = 5e-24 Identities = 54/77 (70%), Positives = 59/77 (76%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADPV+AG+VK NNLGVGA+QPGEV +DDIYEQYKKRMML Sbjct: 209 LLSKMGWKEGEGLGSGRRGMADPVQAGSVKVNNLGVGAEQPGEVTAEDDIYEQYKKRMML 268
Query: 181 GYRYRPNPLNNPRKAYY 231 GYR+RPNPLNNPRKAYY Sbjct: 269 GYRFRPNPLNNPRKAYY 285
>tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008843001 PE=4 SV=1 Length = 441
Score = 112 bits (279), Expect = 1e-23 Identities = 55/77 (71%), Positives = 57/77 (74%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADP+ AG VK +NLGVGAQQPGEV DDDIYEQYKKRMML Sbjct: 365 LLSKMGWKEGEGLGSSRNGIADPIMAGNVKLDNLGVGAQQPGEVTADDDIYEQYKKRMML 424
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRKAYY Sbjct: 425 GYRYRPNPLNNPRKAYY 441
>tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035536 PE=4 SV=1 Length = 473
Score = 112 bits (279), Expect = 1e-23 Identities = 55/77 (71%), Positives = 57/77 (74%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADP+ AG VK +NLGVGAQQPGEV DDDIYEQYKKRMML Sbjct: 397 LLSKMGWKEGEGLGSSRNGIADPIMAGNVKLDNLGVGAQQPGEVTADDDIYEQYKKRMML 456
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRKAYY Sbjct: 457 GYRYRPNPLNNPRKAYY 473
>tr|Q6ENK8|Q6ENK8_ORYSJ Os09g0281600 protein OS=Oryza sativa subsp. japonica GN=P0645D04.21 PE=4 SV=1 Length = 289
Score = 105 bits (263), Expect = 8e-22 Identities = 52/77 (67%), Positives = 56/77 (72%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADP+ AG VK ++LGVGA QPGEV +DDIYEQYKKRMML Sbjct: 213 LLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 272
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRKAYY Sbjct: 273 GYRYRPNPLNNPRKAYY 289
>tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30692 PE=4 SV=1 Length = 431
Score = 105 bits (263), Expect = 8e-22 Identities = 52/77 (67%), Positives = 56/77 (72%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADP+ AG VK ++LGVGA QPGEV +DDIYEQYKKRMML Sbjct: 355 LLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 414
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRKAYY Sbjct: 415 GYRYRPNPLNNPRKAYY 431
>tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_027529 PE=4 SV=1 Length = 493
Score = 105 bits (263), Expect = 8e-22 Identities = 52/77 (67%), Positives = 56/77 (72%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADP+ AG VK ++LGVGA QPGEV +DDIYEQYKKRMML Sbjct: 417 LLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 476
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRKAYY Sbjct: 477 GYRYRPNPLNNPRKAYY 493
>tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2 SV=1 Length = 410
Score = 105 bits (261), Expect = 1e-21 Identities = 52/77 (67%), Positives = 56/77 (72%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADPV AG VK ++LGVGA QPGEV +DDIYEQYKKRMML Sbjct: 334 LLSKMGWREGEGLGSERRGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 393
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRK+YY Sbjct: 394 GYRYRPNPLNNPRKSYY 410
>tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2 SV=1 Length = 419
Score = 105 bits (261), Expect = 1e-21 Identities = 52/77 (67%), Positives = 56/77 (72%) Frame = +1
Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180 LLSKM ADPV AG VK ++LGVGA QPGEV +DDIYEQYKKRMML Sbjct: 343 LLSKMGWREGEGLGSERRGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 402
Query: 181 GYRYRPNPLNNPRKAYY 231 GYRYRPNPLNNPRK+YY Sbjct: 403 GYRYRPNPLNNPRKSYY 419
>tr|B6P8K7|B6P8K7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_104023 PE=4 SV=1 Length = 765
Score = 72.8 bits (177), Expect = 8e-12 Identities = 30/55 (54%), Positives = 39/55 (70%) Frame = +1
Query: 67 PVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 231 PV G N G+G +P E++ +DD YE ++KRMML YR+RPNPLNNPR+ YY Sbjct: 711 PVNKGQQAIENAGLGVDKPSELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 765
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