BP912532
Clone id YMU001_000020_A07
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000020_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTCTTGTCTAAAATGGGATGGAAAAAAGGTGAAGGCCTAGGGAGTGGGAGGGGTGGACGT
GCAGATCCCGTGGAGGCTGGGGCTGTGAAGACAAATAACTTGGGTGTGGGAGCCCAGCAG
CCCGGTGAAGTCAACCCCGATGATGATATATACGAGCAGTACAAGAAACGCATGATGCTT
GGTTATCGCTATAGGCCAAACCCTCTTAATAACCCAAGAAAGGCCTATTATTGATCGCTG
ACTTGTAATTCATGGTTTAAGCTCGTTGGTTCTGCTGCATATATTCGACATTATACTGCG
GCTTCAAAGGTTTTACGACGAGGTGGTGGTGTTCAGTAACCATACCACTGTATGAACGGA
ATGCACTGATAAGTGCTTTGCATGATGTAAATTTTCCTACACAGTGAGCGCCTGTCCAAC
CGTACTCTGGCTGGGTCATTTCCCTCATTGCATTTTATAATCT
■■Homology search results ■■ -
sp_hit_id Q94C11
Definition sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidopsis thaliana
Align length 77
Score (bit) 108.0
E-value 1.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912532|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A07.
(463 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidops... 108 1e-23
sp|Q68FU8|SF04_RAT Splicing factor 4 OS=Rattus norvegicus GN=Sf4... 73 7e-13
sp|Q8CH02|SF04_MOUSE Splicing factor 4 OS=Mus musculus GN=Sf4 PE... 73 7e-13
sp|Q8IWZ8|SF04_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 PE... 72 2e-12
sp|P43582|YFB0_YEAST WW domain-containing protein YFL010C OS=Sac... 30 3.9
sp|P38760|MIP6_YEAST RNA-binding protein MIP6 OS=Saccharomyces c... 29 8.7

>sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidopsis
thaliana GN=At3g52120 PE=2 SV=1
Length = 443

Score = 108 bits (269), Expect = 1e-23
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VKTNNLGVGA PGEV P+DDIYEQYKKRMML
Sbjct: 367 LLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGASAPGEVKPEDDIYEQYKKRMML 426

Query: 181 GYRYRPNPLNNPRKAYY 231
GY++RPNPL NPRKAYY
Sbjct: 427 GYKHRPNPLGNPRKAYY 443


>sp|Q68FU8|SF04_RAT Splicing factor 4 OS=Rattus norvegicus GN=Sf4
PE=2 SV=1
Length = 644

Score = 72.8 bits (177), Expect = 7e-13
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1

Query: 64 DPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 231
+PV GA + G G +P E++ +DD YE ++KRMML YR+RPNPLNNPR+ YY
Sbjct: 589 NPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 644


>sp|Q8CH02|SF04_MOUSE Splicing factor 4 OS=Mus musculus GN=Sf4 PE=1
SV=1
Length = 643

Score = 72.8 bits (177), Expect = 7e-13
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1

Query: 64 DPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 231
+PV GA + G G +P E++ +DD YE ++KRMML YR+RPNPLNNPR+ YY
Sbjct: 588 NPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 643


>sp|Q8IWZ8|SF04_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 PE=1
SV=2
Length = 645

Score = 71.6 bits (174), Expect = 2e-12
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +1

Query: 64 DPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 231
+PV G + G G +P E++ +DD YE ++KRMML YR+RPNPLNNPR+ YY
Sbjct: 590 NPVNKGTTTVDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 645


>sp|P43582|YFB0_YEAST WW domain-containing protein YFL010C
OS=Saccharomyces cerevisiae GN=YFL010C PE=1 SV=1
Length = 211

Score = 30.4 bits (67), Expect = 3.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1

Query: 103 GVGAQQPGEVNPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 231
G AQQP P Y QY ++ + P P P++AYY
Sbjct: 84 GAQAQQPRYYQPQQPQYPQYPQQQRYYPQQAPMPAAAPQQAYY 126


>sp|P38760|MIP6_YEAST RNA-binding protein MIP6 OS=Saccharomyces
cerevisiae GN=MIP6 PE=1 SV=1
Length = 659

Score = 29.3 bits (64), Expect = 8.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1

Query: 409 AHCVGKFTSCKALISAFRSYSGMVTEHHHLVVKPLKP 299
AH G + + ++S F SYS T + LV P+KP
Sbjct: 518 AHQKGLTSQFQQVVSPFSSYSNSYTNMNSLVATPMKP 554


tr_hit_id B3TLK2
Definition tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis sativus
Align length 77
Score (bit) 115.0
E-value 8.0e-25
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP912532|Adiantum capillus-veneris mRNA, clone:
YMU001_000020_A07.
(463 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis s... 115 8e-25
tr|A9RCU3|A9RCU3_PHYPA Predicted protein (Fragment) OS=Physcomit... 113 5e-24
tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole geno... 112 1e-23
tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis... 112 1e-23
tr|Q6ENK8|Q6ENK8_ORYSJ Os09g0281600 protein OS=Oryza sativa subs... 105 8e-22
tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza... 105 8e-22
tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza... 105 8e-22
tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2... 105 1e-21
tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2... 105 1e-21
tr|B6P8K7|B6P8K7_BRAFL Putative uncharacterized protein OS=Branc... 73 8e-12
tr|A6ML01|A6ML01_CALJA Splicing factor 4-like protein (Fragment)... 72 2e-11
tr|A4FV64|A4FV64_BOVIN SF4 protein OS=Bos taurus GN=SF4 PE=2 SV=1 72 2e-11
tr|B3KS44|B3KS44_HUMAN cDNA FLJ35426 fis, clone SMINT2001683, hi... 72 2e-11
tr|A8K7S0|A8K7S0_HUMAN cDNA FLJ75478, highly similar to Homo sap... 72 2e-11
tr|A5PLN4|A5PLN4_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 ... 72 2e-11
tr|Q28E21|Q28E21_XENTR Novel protein containing Surp module and ... 71 2e-11
tr|B1WB15|B1WB15_XENTR Splicing factor 4 OS=Xenopus tropicalis G... 71 2e-11
tr|A8ISC3|A8ISC3_CHLRE Predicted protein OS=Chlamydomonas reinha... 71 3e-11
tr|Q7QBC6|Q7QBC6_ANOGA AGAP003232-PA (Fragment) OS=Anopheles gam... 71 3e-11
tr|Q4RV55|Q4RV55_TETNG Chromosome 15 SCAF14992, whole genome sho... 70 4e-11
tr|Q5XGY4|Q5XGY4_XENLA LOC495256 protein (Fragment) OS=Xenopus l... 70 7e-11
tr|B6M2W2|B6M2W2_BRAFL Putative uncharacterized protein OS=Branc... 69 1e-10
tr|Q9VNC5|Q9VNC5_DROME CG31550, isoform A OS=Drosophila melanoga... 66 1e-09
tr|Q9VNC4|Q9VNC4_DROME CG31550, isoform B OS=Drosophila melanoga... 66 1e-09
tr|Q17P48|Q17P48_AEDAE Putative uncharacterized protein OS=Aedes... 66 1e-09
tr|B4QWW5|B4QWW5_DROSI GD19790 OS=Drosophila simulans GN=GD19790... 66 1e-09
tr|B4PVA8|B4PVA8_DROYA GE25473 OS=Drosophila yakuba GN=GE25473 P... 66 1e-09
tr|B4JHV2|B4JHV2_DROGR GH18599 OS=Drosophila grimshawi GN=GH1859... 66 1e-09
tr|B4I412|B4I412_DROSE GM10812 OS=Drosophila sechellia GN=GM1081... 66 1e-09
tr|B3P2E3|B3P2E3_DROER GG12860 OS=Drosophila erecta GN=GG12860 P... 66 1e-09

>tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis
sativus PE=2 SV=1
Length = 446

Score = 115 bits (289), Expect = 8e-25
Identities = 56/77 (72%), Positives = 58/77 (75%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VKTNNLGVGA QPGEV P+DDIYEQYKKRMML
Sbjct: 370 LLSKMGWKEGEGLGSSKSGIADPIMAGDVKTNNLGVGAHQPGEVTPEDDIYEQYKKRMML 429

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRKAYY
Sbjct: 430 GYRYRPNPLNNPRKAYY 446


>tr|A9RCU3|A9RCU3_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_111812 PE=4 SV=1
Length = 285

Score = 113 bits (282), Expect = 5e-24
Identities = 54/77 (70%), Positives = 59/77 (76%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADPV+AG+VK NNLGVGA+QPGEV +DDIYEQYKKRMML
Sbjct: 209 LLSKMGWKEGEGLGSGRRGMADPVQAGSVKVNNLGVGAEQPGEVTAEDDIYEQYKKRMML 268

Query: 181 GYRYRPNPLNNPRKAYY 231
GYR+RPNPLNNPRKAYY
Sbjct: 269 GYRFRPNPLNNPRKAYY 285


>tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00008843001
PE=4 SV=1
Length = 441

Score = 112 bits (279), Expect = 1e-23
Identities = 55/77 (71%), Positives = 57/77 (74%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VK +NLGVGAQQPGEV DDDIYEQYKKRMML
Sbjct: 365 LLSKMGWKEGEGLGSSRNGIADPIMAGNVKLDNLGVGAQQPGEVTADDDIYEQYKKRMML 424

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRKAYY
Sbjct: 425 GYRYRPNPLNNPRKAYY 441


>tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_035536 PE=4 SV=1
Length = 473

Score = 112 bits (279), Expect = 1e-23
Identities = 55/77 (71%), Positives = 57/77 (74%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VK +NLGVGAQQPGEV DDDIYEQYKKRMML
Sbjct: 397 LLSKMGWKEGEGLGSSRNGIADPIMAGNVKLDNLGVGAQQPGEVTADDDIYEQYKKRMML 456

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRKAYY
Sbjct: 457 GYRYRPNPLNNPRKAYY 473


>tr|Q6ENK8|Q6ENK8_ORYSJ Os09g0281600 protein OS=Oryza sativa subsp.
japonica GN=P0645D04.21 PE=4 SV=1
Length = 289

Score = 105 bits (263), Expect = 8e-22
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VK ++LGVGA QPGEV +DDIYEQYKKRMML
Sbjct: 213 LLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 272

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRKAYY
Sbjct: 273 GYRYRPNPLNNPRKAYY 289


>tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_30692 PE=4 SV=1
Length = 431

Score = 105 bits (263), Expect = 8e-22
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VK ++LGVGA QPGEV +DDIYEQYKKRMML
Sbjct: 355 LLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 414

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRKAYY
Sbjct: 415 GYRYRPNPLNNPRKAYY 431


>tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_027529 PE=4 SV=1
Length = 493

Score = 105 bits (263), Expect = 8e-22
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADP+ AG VK ++LGVGA QPGEV +DDIYEQYKKRMML
Sbjct: 417 LLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 476

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRKAYY
Sbjct: 477 GYRYRPNPLNNPRKAYY 493


>tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2
SV=1
Length = 410

Score = 105 bits (261), Expect = 1e-21
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADPV AG VK ++LGVGA QPGEV +DDIYEQYKKRMML
Sbjct: 334 LLSKMGWREGEGLGSERRGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 393

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRK+YY
Sbjct: 394 GYRYRPNPLNNPRKSYY 410


>tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2
SV=1
Length = 419

Score = 105 bits (261), Expect = 1e-21
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +1

Query: 1 LLSKMXXXXXXXXXXXXXXXADPVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMML 180
LLSKM ADPV AG VK ++LGVGA QPGEV +DDIYEQYKKRMML
Sbjct: 343 LLSKMGWREGEGLGSERRGRADPVMAGDVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMML 402

Query: 181 GYRYRPNPLNNPRKAYY 231
GYRYRPNPLNNPRK+YY
Sbjct: 403 GYRYRPNPLNNPRKSYY 419


>tr|B6P8K7|B6P8K7_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_104023 PE=4 SV=1
Length = 765

Score = 72.8 bits (177), Expect = 8e-12
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +1

Query: 67 PVEAGAVKTNNLGVGAQQPGEVNPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 231
PV G N G+G +P E++ +DD YE ++KRMML YR+RPNPLNNPR+ YY
Sbjct: 711 PVNKGQQAIENAGLGVDKPSELSKEDDEYEAFRKRMMLAYRFRPNPLNNPRRPYY 765